BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472273
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20450.1 | Symbols: LTI29, LTI45, ERD10 | Dehydrin family pr... 1271 0.0
AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47... 322 6e-87
> AT1G20450.1 | Symbols: LTI29, LTI45, ERD10 | Dehydrin family
protein | chr1:7088003-7089606 REVERSE LENGTH=1514
Length=1514
Score = 1271 bits (688), Expect = 0.0
Identities = 1040/1196 (87%), Gaps = 80/1196 (7%)
Strand=Plus/Plus
Query 153 TAAGAAATAGTATACGTCCTTTGCCATATTTTaaaaaaaaaaTAATTAAAATCTTTAACA 212
|||||||||||| ||||||||||||||| ||| |||||| ||| | ||||||||||||
Sbjct 264 TAAGAAATAGTAAACGTCCTTTGCCATAATTT---AAAAAACTAA-TGAAATCTTTAACA 319
Query 213 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTTCTT--CGCACTATAAAACCCCACTCAT 270
|||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||
Sbjct 320 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTACTTCACACACTATAAAGTCCCACTCAT 379
Query 271 CACAATAATATTCATCACACAGCTCTTGAAAACCATCATAAAGAAACTTACAGCTCAAAT 330
||||| ||||||||||||||||||||||||||||||| ||||| |||| | |||||||||
Sbjct 380 CACAACAATATTCATCACACAGCTCTTGAAAACCATCTTAAAGCAACTCAAAGCTCAAAT 439
Query 331 CGAAATTTTGAATA-TTTCTCTTTATCATTCTCGTTAAGCGTTAATTAAACCGATTCAAG 389
||||| ||| || |||||||||||||||| || ||| | | || || ||| |||||
Sbjct 440 CGAAA-TTT--CTAGTTTCTCTTTATCATTCACGCTAA--G-T-GTTCAATCGAATCAAG 492
Query 390 ATTAACTATGGCAGAAGAGTACAAGAACAACGTTCC--AG-AGGA-A----TCA---T-C 437
||||| ||||||||||||||||||||||| |||||| || |||| | | | | |
Sbjct 493 ATTAAGTATGGCAGAAGAGTACAAGAACACCGTTCCAGAGCAGGAGACCCCTAAGGTTGC 552
Query 438 AAC--------CA-CGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTTGAAGAA 488
||| || || |||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 553 AACAGAGGAATCATCGGCGCCAGAGATTAAGGAGCGGGGAATGTTCGATTTCTTGAAGAA 612
Query 489 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAGCACAAGAC 548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 613 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTTGAGCACAAGAC 672
Query 549 TCAGATCTCTGAACCAGAGCCGTTTGTGGCCAAGCACGAAGAAGAGGAACTGAAGGAACA 608
||||||||||||||||||| ||||||||||||||||| | | | ||| | |||||||
Sbjct 673 TCAGATCTCTGAACCAGAGTCGTTTGTGGCCAAGCAC---G-A-A-GAA--G-AGGAACA 723
Query 609 AAAGCCTACTCTCCTTGAGAAGCTTCACCAGAAACACGAGGAGGAAGAAGAAAACAAG-C 667
||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 724 TAAGCCTACTCTTCTCGAGCAGCTTCACCAGAAGCACGAGGAGGAAGAAGAAAACAAGCC 783
Query 668 ATGGTCTCCTCGACAAACTCCACCGTTCCAACAGCTCTTCTT-C-C-TC---TG-T--ag 718
| |||||||||||||||||||||| |||||||||||||||| | | || || | ||
Sbjct 784 A-AGTCTCCTCGACAAACTCCACCGATCCAACAGCTCTTCTTCCTCTTCGAGTGATGAAG 842
Query 719 aaggtgaagacggtgagaagagaaagaagaagaaggaaaagaaaaagatcgttgaaggag 778
||||||||||||||||| | || ||||||||| || ||||||| ||||| ||||||||||
Sbjct 843 AAGGTGAAGACGGTGAG-A-AG-AAGAAGAAGGAGAAAAAGAAGAAGATTGTTGAAGGAG 899
Query 779 ---atgtgaaaacagaggaagaggagaaCCAAGGAGTAATGGACAAGATCAAGGAGAAGT 835
|||||||||||| |||||| ||||| |||||||||||||||| ||| ||||||||||
Sbjct 900 ATCATGTGAAAACAGTGGAAGAAGAGAATCAAGGAGTAATGGACAGGATTAAGGAGAAGT 959
Query 836 TTCCA-TACGGCGAGAAACCAGAGGGTCATGATGTACCAGAGGTCACCACCATGCCAGCA 894
||||| | ||| |||||||||| |||| |||||||||||| ||||||||||||||||||
Sbjct 960 TTCCACT-CGGAGAGAAACCAGGGGGTGATGATGTACCAGTCGTCACCACCATGCCAGCA 1018
Query 895 CCACATTCGGTAGAGGATAAAAAACCAGAGGAAGAAGAGAAGAAAGGATTAATGGATAAG 954
|||||||||||||||||| | |||||||||||||||||||||||||| || |||||||||
Sbjct 1019 CCACATTCGGTAGAGGATCACAAACCAGAGGAAGAAGAGAAGAAAGGGTTTATGGATAAG 1078
Query 955 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAGGTGGTCAACAGC 1014
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct 1079 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAAGTCGTCAACACC 1138
Query 1015 GCACCGCTGGTTGAAACAGCAACACCGATCGCGGAGCATCC-GGAGGAGAAGAAGGGGTT 1073
|||||||||||||||||||||||||||| || || ||||| ||||||||||||||| ||
Sbjct 1139 ACACCGCTGGTTGAAACAGCAACACCGATTGCTGA-CATCCCGGAGGAGAAGAAGGGATT 1197
Query 1074 TATGGATAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACTAGTGgagaggaaga 1133
|||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 1198 TATGGACAAGATCAAAGAGAAGCTTCCAGGTTATCACGCCAAGACCACTGGAGAGGAAGA 1257
Query 1134 gaagaaagataaagagtctctg-t-aagagaaaaagatga-aagaatgaataataatgat 1190
||||||||| ||| ||| |||| | |||||||||| |||| |||| ||||||||||||||
Sbjct 1258 GAAGAAAGA-AAA-AGTGTCTGATTAAGAGAAAAATATGATAAGAGTGAATAATAATGAT 1315
Query 1191 gTGGGAGTGGAACATT-TGTTGTGttttttttttttAATGTTGATCATTATCTCtttttt 1249
|||||||||| || || |||||| ||||| |||||| |||||||||| |||||||| |
Sbjct 1316 GTGGGAGTGGGAC-TTATGTTGT-TTTTTGTTTTTT---GTTGATCATTGTCTCTTTTAT 1370
Query 1250 tttGTATTT-TAAGCTGTGTTATCCAAGTTTGTGTTTAGTGTTAGACCATTTGTGT 1304
||||| ||| || ||||| | ||||||||||||||||| |||||| |||||||||
Sbjct 1371 TTTGTCTTTCTA-GCTGT-TC-TCCAAGTTTGTGTTTAGAGTTAGATCATTTGTGT 1423
Score = 167 bits (90), Expect = 3e-40
Identities = 135/155 (87%), Gaps = 10/155 (6%)
Strand=Plus/Plus
Query 1 ACCAAACTTCTATACATTTCCCGTGAAATAAAAGTACATGACTATGCAAATATCTAATTA 60
|||||||||| |||| | ||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 79 ACCAAACTTCCATACGTCTCCCGTGAACTAAAAGTACATTACTATGCAAATATCTAA-TA 137
Query 61 GTATTAGTTAAATCTTTAATCTGTATATTAAAAACATAAATCCTTAAATTAAGAAAAAGA 120
|| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |
Sbjct 138 -TA--AGTTAACTCTAT-ATCAATATATTAAAAACATAAATCCTTAAATTAAGAAAAA-A 192
Query 121 -A-GGTGGTGATTTCAT-GATATTTATCCACCGAC 152
| || ||||||||||| |||||| ||||||||||
Sbjct 193 TATGG-GGTGATTTCATTGATATTCATCCACCGAC 226
> AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated
47 | chr1:7084409-7085772 REVERSE LENGTH=1219
Length=1219
Score = 322 bits (174), Expect = 6e-87
Identities = 642/849 (76%), Gaps = 107/849 (13%)
Strand=Plus/Plus
Query 425 CAGAGGAATCATCAACCACGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTT-- 482
||||||||||| || | ||||| | ||||||| ||| || ||| |||| ||||||||
Sbjct 164 CAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATTGTTTGATTTCTTGG 223
Query 483 -GAAGAA-AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAG 540
|||||| || |||||||| ||||||||||| || ||||| |||| ||||||||||||
Sbjct 224 GGAAGAAGGAA-GAGGAAGTGAAACCTCAAGAGACAACGACGCTCGAGTCTGAGTTCGAT 282
Query 541 CACAAGACTCAGATCTCTGAACCAGAGCCGTTTG-TGGCCAAGCACGAAGAAGAGGAACT 599
|| ||| |||||||||||||||| | | ||| | | || ||||||| |||| |||
Sbjct 283 CATAAGGCTCAGATCTCTGAACC-G-G-AGTTAGCT-GCGGAGCACGAGGAAG-TGAA-- 335
Query 600 GAAGGAACAAAAGCCTACTCTCCTTGAGAAGCTTCACCAG-AAACA-CGAGGAGGAAGAA 657
| | |||| ||| |||||| || ||| ||||||| || ||| | |||||| || ||
Sbjct 336 GGA-GAAC--AAGATTACTCTGCTAGAGGAGCTTCA--AGAAAAGACCGAGGAAGATGAG 390
Query 658 GAAAACAAGCATGGTCTCCTCGACAAA-CTCCACCGTTCCAACAGCTCTTCTTCCTCTGT 716
|| ||||||| | || || |||| ||| || ||||| ||||||||||||||||||||| |
Sbjct 391 GAGAACAAGCCTAGTGTCATCGA-AAAGCTTCACCGATCCAACAGCTCTTCTTCCTCT-T 448
Query 717 agaag-g-tgaagacggtgagaagagaaagaagaagaaggaaaagaaaaagatcgttgaa 774
| || | |||||| |||||| || ||||||| |||| | ||||| ||||||||||||
Sbjct 449 CG-AGCGATGAAGAAGGTGAG--GA-AAAGAAGGAGAA-G--AAGAAGAAGATCGTTGAA 501
Query 775 ggagatgtgaaaacagaggaagaggagaaCCAAGGAGTAATGGACAAGATCAAGGAGAAG 834
||||| | | | | | | | || | ||||| || |||| |||||||||||||||
Sbjct 502 GGAGA-G-G-----A-A-G-ATA--AG-A--AAGGACTAGTGGAGAAGATCAAGGAGAAG 546
Query 835 TTTCC---ATACGGCGAGAA-ACCAG-AG-GGTCATGATGTACCAGAGGT-CACCACCAT 887
| || | || ||| || | ||| || || |||||||||||| | ||| |||||
Sbjct 547 CTCCCAGGACACCACGACAAGA-CAGCAGAGG--ATGATGTACCAG-TTTCCACTACCAT 602
Query 888 GCCAGCACCACAT-TCGGTAGA--G-GAT--A-AAAAACCA-GAGGAAGAAGAGAAGAAA 939
|| | |||| | |||| ||| | | | | | |||| || ||||||||||||
Sbjct 603 CCCGGTACCA-GTGTCGG-AGAGTGTGGTGGAGCATGACCATCCCGAGGAAGAGAAGAAA 660
Query 940 GGATTAATGGATAAGATCAAGGAGAAGCTTCCAGGCCA-CA-G-CAAGAAACCAGAGGAT 996
|||||| | || |||||||||||||||||||| || || || | | ||||| ||||||||
Sbjct 661 GGATTAGTTGAGAAGATCAAGGAGAAGCTTCCTGGTCACCACGACGAGAAAGCAGAGGAT 720
Query 997 TCA-CAGGTGGTCAACAG--CGCACCGCTGGTTGAAAC--AGCA--------A--C-AC- 1039
||| ||| | ||| || | | | ||| |||||| ||| |||| | | ||
Sbjct 721 TCACCAGCT-GTC-AC-GTCCACGCCGTTGGTTGTAACGGAGCATCCGGTGGAGCCTACG 777
Query 1040 -C-GA---T-C-GCGGAGCATCCGGAGGAGAAGAAGGGG-TTTATGGATAAGATCAAAGA 1091
| || | | | ||| ||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 778 ACGGAGCTTCCAGTGGAACATCCGGAGGAGAAGAAGGGGATTT-TGGAAAAGATCAAAGA 836
Query 1092 GAAGCTTCCAGGTTATCATGCCAAGACTAGTGgagaggaagagaagaaagataaagagtc 1151
||||||||||||||||||||||||||| | || |||||||| ||||||||| ||||||||
Sbjct 837 GAAGCTTCCAGGTTATCATGCCAAGACCACTGAAGAGGAAGTGAAGAAAGAAAAAGAGTC 896
Query 1152 tc-tg-taagagaaaaa-gatgaaagaatgaataataatgatgTGGGAGTGGAACATTTG 1208
| || | | || |||| | | |||||||||||||| ||||||||||||| ||||| |
Sbjct 897 TGATGATTA-AGCAAAATGGTTAAAGAATGAATAAT---GATGTGGGAGTGGGACATTCG 952
Query 1209 TTGTGtttt 1217
||||||||
Sbjct 953 CTGTGTTTT 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64156296510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5