BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472276
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20470.1 | Symbols: | SAUR-like auxin-responsive protein fa... 961 0.0
> AT1G20470.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr1:7094260-7094869 FORWARD LENGTH=610
Length=610
Score = 961 bits (520), Expect = 0.0
Identities = 583/613 (95%), Gaps = 5/613 (1%)
Strand=Plus/Plus
Query 1 CAGACAGTAACATACTAACAGTATACACAACGGTATTATATTTGTAACAGATCAAAGTTC 60
||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||
Sbjct 1 CAGACAGTAACATACTAACCGTATACACAACGGTATTATATTGGTAACATATCAAAGCTC 60
Query 61 TCTATATGTCTCTGAAGAAAAGGTCTTGCTCGAGGCTTAGACTCACCGATTTGATGGAGA 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTATATGTCTCTGAAGAAAAGATCTTGCTCGAGGCTTAGACTCACCGATTTGATGGAGA 120
Query 121 AGTGGAAGAAGTGTAAGAAAGGACACTTTGCTGTGTACACCAGAGAAGGCAGGAGGTTTG 180
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 121 AGTGGAGGAAGTGTAAGAAAGGACACTTCGCTGTGTATACCAGAGAAGGCAGGAGGTTTG 180
Query 181 TTTTGCCGTTGGATTATCTCAAACATCCAATCTTTCAGGTCTTATTGGAGATGGCAGAGG 240
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTTACCCTTGGATTATCTCAAACATCCAATCTTTCAGGTCTTATTGGAGATGGCAGAGG 240
Query 241 AAGAGTTTGGTTCCACCATTTGTGGTCCTTTACAGGTTCCTTGCGATGGAGGTTTGATGG 300
|||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 241 AAGAGTTTGGCTCCACTATTTGTGGCCCTTTACAGGTTCCTTGCGACGGAGGTTTGATGG 300
Query 301 ATCACATCCTCATGTTGTTGAGAAACAGGAATTTGTCTGACCATGATGATGATGGTGGTG 360
|||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 301 ATCACATCCTCATGTTGTTGAGGAACAAGAGTTTGTCTGACCATGATGATGATGGTGGTG 360
Query 361 ATGATGGTGTGAAGAAGAAGACGATGAACCAGGATGTGTCCCCCATGAGCACGTCGTGCA 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGATGGTGT---GAAGAAGACGATGAACCAGGATGTGTCCCCCATGAGCACGTCGTGCA 417
Query 421 AGGGAGCTTCATCGGTTTCATATTTCTTCCCTCTCTTTCGTTGCAACGCAGCCCATGATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGGGAGCTTCATCGGTTTCATATTTCTTCCCTCTCTTTCGTTGCAACGCAGCCCATGATC 477
Query 481 AGAGCAAGCTCCAGTCTCTAGTTTTTTAACAGTTTATGCGTTGTGTAGAGCGCTTTT-AC 539
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 478 AGAGCAAGCTCCAGTCTCTAGTTTTTTAACAGTTTATG-GTTGTGGAGAGCGCTTTTTAT 536
Query 540 ACACAAAGGTCTTTTCTGTTTGTATATATATAGAAACAGAGATTCTATATAAGCTTTCAG 599
||||||| ||||||||||||||||||| ||||||||||||||||| ||||| | |||||
Sbjct 537 ACACAAAAATCTTTTCTGTTTGTATATAAATAGAAACAGAGATTCTCTATAAACCTTCAG 596
Query 600 TTTGTATATCATT 612
|||||||||||||
Sbjct 597 TTTGTATATCATT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5