BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472278
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20510.1 | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:71034... 2811 0.0
> AT1G20510.1 | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:7103454-7105881
REVERSE LENGTH=1857
Length=1857
Score = 2811 bits (1522), Expect = 0.0
Identities = 1642/1702 (96%), Gaps = 0/1702 (0%)
Strand=Plus/Plus
Query 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60
Query 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120
Query 121 CGACGTCACTACTTTCATATCTTCACAAGCTCATCGCGGACGTATCGCCTTCATCGACGC 180
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 121 CGACGTCACTACTTTCATTTCTTCACAAGCTCATCGTGGCCGTATCGCCTTCATCGACGC 180
Query 181 TTCCACTGGTCAAAACCTCACCTTCTCCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCACAGGTCAAAACCTCACCTTCACCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240
Query 241 TTGCCTCTCCAACATGGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCTCCAAACTC 300
||| |||||| | || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 TTGTCTCTCCGAGATAGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCCCCAAACTC 300
Query 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360
Query 361 GAATCCTCTCAACACTTCAAACGAAATCGCTAAACAGATTAAGGACTCAAATCCAGTCCT 420
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 361 GAATCCACTCAACACTTCAAACGAGATCGCTAAACAGATTAAGGATTCAAATCCAGTCCT 420
Query 421 CGCCTTCACCACGTCGCAGCTCCTCCCGAAAATCGCCGCCGCAGCAAAGAAGCTCCCGAT 480
|||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 421 CGCCTTCACCACATCGCAGCTTCTCCCGAAAATCTCCGCCGCCGCAAAGAAGCTCCCGAT 480
Query 481 CGTTCTCATGGACGAGGAACGAGTTGACTCAGTGGGTAAAGTAAGAAGATTAATGGAGAT 540
||| || |||||||||||||||||||||||||||||| | || |||||||| |||||||
Sbjct 481 CGTGCTTATGGACGAGGAACGAGTTGACTCAGTGGGTGATGTGAGAAGATTGGTGGAGAT 540
Query 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCATGGAGCGAGTTGACCAGGATGATACAGC 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCAAGGAGCGAGTTGACCAGGATGATACGGC 600
Query 601 GACTTTGCTTTACTCGTCAGGAACCACCGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 601 GACTTTGCTTTACTCTTCAGGAACCACGGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660
Query 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGACGATGGAGAGCA 720
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGATGATGGAGAGCA 720
Query 721 ACGATTCATCTGCACCGTTCCTATGTTTCATATCTACGGTTTAGCTGCGTTCGCCACTGG 780
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 721 ACGATTCATCTGCACTGTTCCTATGTTTCACATCTACGGTTTAGCTGCGTTCGCTACTGG 780
Query 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840
Query 841 GTCGGCGATTGGTAAGTATCAAGCCACGTGTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900
||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 GTCAGCGATTGGCAAGTATCAAGCCACGTCTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900
Query 901 GATGGTCAACGGCGCTGATCAGATTAAGGCTAAGTATGATTTGAGCTCTCTGCATACGGT 960
|||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 901 GATGGTTAACGGTGCAGATCAGATTAAGGCTAAGTATGATTTGAGCTCTATGCATACTGT 960
Query 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020
Query 1021 GACGGTTAAGATTTTGCAAGGCTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCAAC 1080
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GACGGTTAAGATTTTACAAGGTTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCTAC 1080
Query 1081 GGATACTGTAGAGGAAAGTCGGAGATACGGTACCGCCGGGAAATTGTCGGCAAGTATGGA 1140
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1081 GGATACTGTTGAGGAAAGTCGGAGATACGGTACCGCTGGGAAATTGTCGGCAAGTATGGA 1140
Query 1141 AGGGAGGATTGTGGATCCGGTTACTGGTCAGATTCTTGGACCGAACCAAACCGGTGAGCT 1200
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1141 AGGGAGGATTGTTGATCCGGTTACTGGTCAGATTCTTGGACCGAAACAAACCGGTGAGCT 1200
Query 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGCTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGTTC 1260
Query 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320
Query 1321 ATTCATATTCGTTGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTACCAGGTTGC 1380
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1321 ATTCATATTCGTGGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTATCAGGTTGC 1380
Query 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCCGCAGTGAT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCTGCAGTGAT 1440
Query 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500
Query 1501 GAGCAGCTTATCAGAGAAGTCGATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GAGCAGCTTATCAGAGAAGACAATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560
Query 1561 GAGAATACGAAAAGTTGCTTTCGTATCTTCCATACCAAAGAACCCTTCAGGCAAGATACT 1620
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1561 GAGGATACGAAAAGTTGCTTTCGTATCTTCAATACCAAAGAACCCTTCAGGCAAGATTCT 1620
Query 1621 ACGCAAGGATCTCATCAAGCTAGCAACTTCCAACTCCAAGCTTTGAAATTGTTATGAGAG 1680
|||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 ACGCAAAGATCTCATCAAGATAGCAACTTCCAACTCCAAGCTTTGAAATTATTATGAGAG 1680
Query 1681 CCAATCTCCATGTATTATTTAT 1702
|||||||||||||||||||||
Sbjct 1681 TCAATCTCCATGTATTATTTAT 1702
Score = 154 bits (83), Expect = 3e-36
Identities = 112/125 (90%), Gaps = 6/125 (5%)
Strand=Plus/Plus
Query 1700 TATGCATCCATGTTGAAGTATAACCATGTGGTCTCAAAACACAGAAGATTACACATAAAT 1759
||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| | ||
Sbjct 1738 TATGCATCCATGTTGAAATATGACCATGTGGTCCCAAAACACAGAAGATTACAC--ACAT 1795
Query 1760 AATGTGGAGACCAGTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTATGAT 1819
|| | | | ||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1796 AA-AT-G-G-CCACTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTCTGAT 1851
Query 1820 CAAAT 1824
|||||
Sbjct 1852 CAAAT 1856
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90260579910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5