BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472283
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20540.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2109 0.0
AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein) h... 1201 0.0
AT1G20550.1 | Symbols: | O-fucosyltransferase family protein |... 185 7e-46
> AT1G20540.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:7112611-7115362 FORWARD LENGTH=1268
Length=1268
Score = 2109 bits (1142), Expect = 0.0
Identities = 1223/1262 (97%), Gaps = 6/1262 (0%)
Strand=Plus/Plus
Query 1 TCTACCTGAATCAGTGCGTC-GGCTCAGGCGACAATGCAAGGAGGATCGTCGGGAATCGG 59
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||| || ||
Sbjct 8 TCTACCTGAATCAGTGCGTCTGGCTCAGGTGACAATGCAAGGAGGATCATCGGGTATTGG 67
Query 60 ATACGGTTTGAAGTATCAGGCTAGATGTATATCGGATGTGAAAGCAGATACGGATTACAC 119
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 ATACGGTTTGAAGTATCAGTCTAGATGTATATCGGATGTGAAAGCCGATACGGATTACAC 127
Query 120 AAGCTTTCTCACTGGAACT-TTAAGTTTGAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 178
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 128 AAGCTTTCTCACTGGAACTCTT-AGTTTAAAAGAAGAAAATGAGGTTCATCTTCTTCGTT 186
Query 179 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 TGTCATCTGGTGGATCTGAGCTTATATGTGAGGGTTTGTTCTCTCATCCTAATGAGATTT 246
Query 239 GGGACCTTGCTTCTTGCCCTTTCGATCAACGCATTTTCTCTACTGTCTTCTCCACTGGTG 298
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 247 GGGACCTTGCTTCTTGCCCTTTTGATCAACGCATTTTCTCCACCGTCTTCTCCACTGGTG 306
Query 299 AATCATTTGGAGCAGCGATTTGGCAAATTCCTGAGTTATATGGTCAATTGAATTCTCCAC 358
|||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 307 AATCGTTTGGAGCAGCGATATGGCAAATTCCTGAGTTATATGGTCAACTGAATTCTCCAC 366
Query 359 AATTGGAGCGTGTTGCATCTCTTGATGCACATGTTGGTAAGATTAATTGTGTTCTTTGGT 418
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 367 AATTGGAGCGTGTTGCTTCTCTTGATGCTCATGTTGGTAAGATTAATTGTGTTCTTTGGT 426
Query 419 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGCCTTCTGGAAGATGTGACAAGTTAATCAGCATTGATGAACAAAATATTTTCTTGTGGA 486
Query 479 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GCTTAGACTGTTCGAAAAAGTCTGCTGAGGTTCTATCTAAGGATTCAGCTGGGATGTTGC 546
Query 539 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACTGGTG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 547 ATTCTTTATCTGGTGGAGCATGGGATCCACATGATGTAAATGCTGTTGCAGCAACGGGTG 606
Query 599 AATCATCTGTCCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 AATCATCTGTTCAGTTCTGGGACTTGCGTACTATGAAGAAGGTTAACTCAATTGAACATG 666
Query 659 CTCATGTACGCGGTGTTGACTACAATCCCAAGAGAGAACATATACTTGTGACTGCAGAGG 718
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 667 CTCATGTACGCGGTGTTGATTACAATCCCAAGAGAGAACATATACTTGTAACTGCAGAGG 726
Query 719 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 ATGAATCTGGCATACATGTCTGGGATCTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTC 786
Query 779 CTGGTCATACACATTGGACATGGGCTGTCAAGTGTAACCCTGAGTATGATGGACTGATTC 838
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 787 CTGGTCATACACATTGGACTTGGGCTGTCAGGTGTAACCCTGAGTATGATGGACTGATTC 846
Query 839 TGAGCGCTGGAACAGATTCGGCTGTCAACCTGTGGTTTGCTTCAGCATCACCCAGTGATG 898
||||||||||||||||||||| |||||||||||||| |||||||||| || |||||||||
Sbjct 847 TGAGCGCTGGAACAGATTCGGTTGTCAACCTGTGGTATGCTTCAGCAACATCCAGTGATG 906
Query 899 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTTAACT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 907 ACAAAACCTCAGAAAGTCCTGTGGAATCCACACGACAGCGTGTGAACCCGTTGCTCAACT 966
Query 959 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 CATACACTGACTATGAAGACAGTGTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGG 1026
Query 1019 TTTTTGCATCATTATCATATGACGGAAGAGTCGTCATCGAATCCGTCAAGCCTTTCCTTC 1078
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1027 TTTTTGCATCATTATCATATGACGGAAGAGTCATCATCGAATCCGTCAAGCCTTTCCTTC 1086
Query 1079 CAAGAATATAGTAAAAACTCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CAAGAATATAGTAAAAACCCAGCATCTCTTTTGCTCTGACCCAGACACGACCCATCTTTT 1146
Query 1139 GGTAAAGAAGTTGGCACTATTGTATTTGAAGCAATGTACTTTTGACACAATCTTTGTGGA 1198
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1147 GGTAAAG---TTGGCACTATTGTATTTGAAACAATGTACTTTTGACACAATCTTTGTGGA 1203
Query 1199 TCATGATGTATCTATCTATCATTCACCCAGATTCTTTCGGTACCAATATTCAGTTGCTTT 1258
|| |||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 1204 TCCTGATGTATCTATCTATCATTCACCAAGATTCTATCGGTATCAATATTCAGTTGCTTT 1263
Query 1259 GA 1260
||
Sbjct 1264 GA 1265
> AT1G76260.1 | Symbols: DWA2 | DWD (DDB1-binding WD40 protein)
hypersensitive to ABA 2 | chr1:28610265-28613263 FORWARD LENGTH=1416
Length=1416
Score = 1201 bits (650), Expect = 0.0
Identities = 933/1068 (87%), Gaps = 25/1068 (2%)
Strand=Plus/Plus
Query 33 AATGCAAGGAGGATCGTCGGGAATCGGATACGGTTTGAAGTATCAGGCTAGATGTATATC 92
||||||||||||||| ||||| || || || ||||||||||||||||| |||||||||||
Sbjct 98 AATGCAAGGAGGATCATCGGGTATTGGTTATGGTTTGAAGTATCAGGCCAGATGTATATC 157
Query 93 GGATGTGAAAGCAGATACG-GATTACACAAGCTTTCTCACTGGAACTTTAAGTTTGAAAG 151
|||||| |||||||||| | ||| |||| ||||| ||||||||||| |||| |||||||
Sbjct 158 GGATGTTAAAGCAGATA-GAGATCACACTAGCTTCCTCACTGGAACCCTAAGCTTGAAAG 216
Query 152 AAGAAAATGAGGTTCATCTT-CTTCGTTTGTCATCTGGTGGATCTGAGCT-TATATGTGA 209
||||||||||||||||| || ||||||||||| ||||||||||||||||| | |||||||
Sbjct 217 AAGAAAATGAGGTTCAT-TTGCTTCGTTTGTCTTCTGGTGGATCTGAGCTGT-TATGTGA 274
Query 210 GGGTTTGTTCTCTCATCCTAATGAGATTTGGGACCTTGCTTCTTGCCCTTTCGATCAACG 269
||| |||||||| ||||||||||| ||||||||||||||||||| |||||| ||||||||
Sbjct 275 GGGATTGTTCTCGCATCCTAATGAAATTTGGGACCTTGCTTCTTCCCCTTTTGATCAACG 334
Query 270 CATTTTCTCTACTGTCTTCTCCACTGGTGAATCATTTGGAGCAGCGATTTGGCAAATTCC 329
||||||||||||||||||||||||||| || |||| ||||||||| || ||||| |||||
Sbjct 335 CATTTTCTCTACTGTCTTCTCCACTGGCGACTCATATGGAGCAGCAATATGGCAGATTCC 394
Query 330 TGAGTTATATGGTCAATTGAATTCTCCA-CAATTGGAGCGTGTTGCATCTCTTGATGCAC 388
|||| ||||||||||| ||||||| || || ||||| ||||||| || ||||||||||
Sbjct 395 TGAGCCATATGGTCAATCGAATTCTTCAACA-TTGGAATGTGTTGCTTCCCTTGATGCAC 453
Query 389 ATGTTGGTAAGATTAATTGTGTTCTTTGGTGGCCTTCTGGAAGATG-TGACAAGTTAATC 447
||||||||||||||||||| ||||||||||| || ||||||| || |||||||||||||
Sbjct 454 ATGTTGGTAAGATTAATTGCGTTCTTTGGTGTCCCTCTGGAA-ATTCTGACAAGTTAATC 512
Query 448 AGCATTGATGAACAAAATATTTTCTTGTGGAGCTTAGACTGTTCGAA-AAA-GTCTGCTG 505
||||| |||||||||||| || |||| ||||| ||||||| ||| || ||| || || |
Sbjct 513 AGCATGGATGAACAAAATCTTGTCTTCTGGAGTTTAGACTCTTCAAAGAAAAGT--GCGG 570
Query 506 AGGTTCTATCTAAGGATTCAGCTGGGATGT-TGCATTCTTTATCTGGTGGAGCATGGGAT 564
||||| |||||||||| |||||||| ||| | |||||||||||||||||||||||| ||
Sbjct 571 AGGTTTTATCTAAGGAGTCAGCTGGTATGCGT-CATTCTTTATCTGGTGGAGCATGGAAT 629
Query 565 CCACATGATGTAAATGCTGTTGCAGCAACTGGTGAATCATCTGTCCAGTTCTGGGACTTG 624
||||||||||| ||| |||||||||||||| |||||||||| ||||||| ||||||||
Sbjct 630 CCACATGATGTGAATTCTGTTGCAGCAACTTCTGAATCATCTATCCAGTTTTGGGACTTA 689
Query 625 CGTACTATGAAGAAGGTTAACTCAATTGAACATGCTCATGTACGCGGTGTTGACTACAAT 684
||||||||||||||| ||| |||||||||| ||| |||||||| |||||||||||||
Sbjct 690 CGTACTATGAAGAAGAATAATTCAATTGAACGTGCCCATGTACGTAATGTTGACTACAAT 749
Query 685 CCCAAGAGAGAACATATACTTGTGACTGCAGAGGATGAATCTGGCATACATGTCTGGGAT 744
| |||||||||||||||||| || |||| || ||||||||||| |||||| ||||||||
Sbjct 750 CTCAAGAGAGAACATATACTCGTTTCTGCGGATGATGAATCTGGTATACATCTCTGGGAT 809
Query 745 CTCCGGAAGGCCAAGGTTCCTGTCCAAGAGCTTCCTGGTCATACACATTGGACATGGGCT 804
|| |||||| | ||| ||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 810 CTTCGGAAGACAAAGTTTCCTGTGCAAGAGCTCCCTGGTCATACACACTGGACATGGGCT 869
Query 805 GTCAAGTGTAACCCTGAGTATGATG-GACTGATTCTGAGCGCTGGAACAGATTCGGCTGT 863
|||| |||||||||||||||||| | | || |||||||||| ||||||||| || |||||
Sbjct 870 GTCAGGTGTAACCCTGAGTATGAAGAG-CTAATTCTGAGCGTTGGAACAGACTCAGCTGT 928
Query 864 CAACCTGTGGTTTGCTTCAGCATCACCCAGTGATG-ACAAAACCTCAGAAAGTCCTGTGG 922
|||| ||||||||||||||||||| ||||| | | ||||| |||||||| || ||||
Sbjct 929 CAACTTGTGGTTTGCTTCAGCATCT---AGTGA-GCATAAAACATCAGAAAGCCCGGTGG 984
Query 923 AATCCA-CACGACAGCGTGTGAACCCGTTGCTTAACTCATACACTGACTATGAAGACAGT 981
|| | | |||| ||||||||||||||||| || ||||| || |||||||| |||||||||
Sbjct 985 AAGC-ATCACGTCAGCGTGTGAACCCGTTACTAAACTCTTATACTGACTACGAAGACAGT 1043
Query 982 GTCTATGGCCTTGCTTGGAGTTCACGTGAGCCTTGGGTTTTTGCATCATTATCATATGAC 1041
||||| |||||||||||||| || |||||||||||| ||||||||||||| |||||||||
Sbjct 1044 GTCTACGGCCTTGCTTGGAGCTCGCGTGAGCCTTGGATTTTTGCATCATTGTCATATGAC 1103
Query 1042 GGAAGAGTCGTCATCGAATCCGTCAAGCCTTTCCTTCCAAGAATATAG 1089
|| || || || ||||||||||||||||||||||| ||||||| ||||
Sbjct 1104 GGTAGGGTTGTGATCGAATCCGTCAAGCCTTTCCTGCCAAGAAGATAG 1151
> AT1G20550.1 | Symbols: | O-fucosyltransferase family protein
| chr1:7115241-7118161 REVERSE LENGTH=2164
Length=2164
Score = 185 bits (100), Expect = 7e-46
Identities = 110/115 (96%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1146 AAGTTGGCACTATTGTATTTGAAGCAATGTACTTTTGACACAATCTTTGTGGATCATGAT 1205
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 2160 AAGTTGGCACTATTGTATTTGAAACAATGTACTTTTGACACAATCTTTGTGGATCCTGAT 2101
Query 1206 GTATCTATCTATCATTCACCCAGATTCTTTCGGTACCAATATTCAGTTGCTTTGA 1260
|||||||||||||||||||| ||||||| |||||| |||||||||||||||||||
Sbjct 2100 GTATCTATCTATCATTCACCAAGATTCTATCGGTATCAATATTCAGTTGCTTTGA 2046
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5