BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472286 Length=1946 Score E Sequences producing significant alignments: (Bits) Value AT1G20560.1 | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7... 2911 0.0 > AT1G20560.1 | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119676-7121817 REVERSE LENGTH=2009 Length=2009 Score = 2911 bits (1576), Expect = 0.0 Identities = 1792/1895 (95%), Gaps = 19/1895 (1%) Strand=Plus/Plus Query 15 TACTACTTTTCCGGCGaaaaaaaCTAAGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 74 ||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 63 TACTACTTTTCCGGCGATAAAATCTATGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 122 Query 75 TTACGTTCCTCTTACTCCAATCAGCTTCCTCGATCGATCTGCTGTCGTCTACGCTGACAG 134 ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 123 CTACGTTCCTCTCACTCCGATCAGCTTCCTCGATAGATCTGCTGTCGTCTACGCTGACAG 182 Query 135 AGTCTCCGTCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 194 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 AGTCTCCATCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 242 Query 195 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 302 Query 255 GGCCCCAAATATTCCAGCTATGGTTGAGTTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 314 ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 303 GGCTCCAAACGTTCCAGCTATGGTTGAATTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 362 Query 315 GCTCTGTACACTCAACATTCGTCATGATTC-TGCACTTGTAGCTGTCTTA-TTGAGACAT 372 |||||||||||||||||||||||||||||| | ||||||| |||||||| || |||||| Sbjct 363 GCTCTGTACACTCAACATTCGTCATGATTCAT-CACTTGTTGCTGTCTTGCTT-AGACAT 420 Query 373 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATTGCTCAAGGAGCTTGT 432 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 421 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATAGCTGAAGGAGCTTGT 480 Query 433 GAAATCCTCTCGAAGAAGGGTGACAAGGTCCCTATTTTGGTCTTGGTCCCAGAGCCTCTT 492 ||||||||||| || || |||||||||||||| |||||||||||| |||||||||||||| Sbjct 481 GAAATCCTCTCAAATAAAGGTGACAAGGTCCCGATTTTGGTCTTGATCCCAGAGCCTCTT 540 Query 493 ACTCAATCTGTTTCAGGGAAGAAGAGATCTGAGGAGGATATAATGGTCTACGAAGATGTT 552 ||||||||||||||| ||||||||||||||||||| | || |||| |||||||||||| Sbjct 541 ACTCAATCTGTTTCAAGGAAGAAGAGATCTGAGGA--A-ATGATGGAATACGAAGATGTT 597 Query 553 GTGGCGATGGGGAAATCGGATTTCGAGGTTAAACGACCAACTGATGAGTGTGATCCTATA 612 || ||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||| Sbjct 598 GTAGCGATGGGGAAATCGGACTTCGAGGTTATACGACCAACAGATGAGTGTGATGCTATA 657 Query 613 TCTGTTAATTACACATCAGGTACCACTTCAAGTCCCAAAGGTGTTGTTTATAGTCACAGA 672 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 658 TCTGTTAATTACACATCAGGTACCACTTCAAGCCCCAAAGGTGTTGTTTATAGTCACAGA 717 Query 673 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 777 Query 733 TATCTATGGACTAATCCCATGTTTCATTGCAATGGCTGGTGCTTATTGTGGGGTGTTACC 792 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 778 TATCTATGGACTAATCCCATGTTTCACTGCAATGGCTGGTGCTTATTGTGGGGTGTTACT 837 Query 793 GCAATTGGTGGGACTAATATATGTTTGAGGAATGTGACGGCCAAGGCTATATTCGATAAT 852 || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 838 GCTATTGGTGGGACTAATATATGTTTGAGGAATGTTACGGCCAAGGCTATATTTGATAAT 897 Query 853 ATTTCCCAGCATAAGGTGACTCACATGGGAGGTGCGCCAACGATATTGAATATGATTATC 912 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 898 ATTTCCCAGCATAAGGTGACTCATATGGGAGGTGCGCCGACGATATTGAATATGATCATC 957 Query 913 AATGCGCCTGAATCCGAGCAGAAACCGCTTCCCGGGAAGGTATCTTTTATAACCGGTGCT 972 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 958 AATGCGCCTGAATCTGAGCAGAAACCGCTTCCCGGGAAGGTGTCTTTTATAACCGGTGCT 1017 Query 973 GCACCTCCACCAGCTCACGTGATTTACAAGATGGAAGAGTTGGGCTTTTCTATGTTTCAT 1032 ||||| ||||||||||| ||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1018 GCACCGCCACCAGCTCATGTGATTTTCAAGATGGAAGAGTTGGGGTTTTCTATGTTTCAT 1077 Query 1033 TCCTATGGGTTAACCGAAACTTATGGACCAGGCACCATCTGTACATGGAAACCTGAGTGG 1092 |||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 1078 TCCTATGGGTTAACTGAAACTTATGGACCAGGCACAATCTGTACATGGAAGCCTGAGTGG 1137 Query 1093 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCCCTG-CAAGGCGTGAATCATTT 1151 |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| Sbjct 1138 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCTC-GACAAGGCGTGAATCATTT 1196 Query 1152 AGGGATCGAGGAAATACAAGTTAAAGATCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1211 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1197 AGGGCTCGAGGAAATACAAGTTAAAGACCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1256 Query 1212 TGTGACTATGGGTGAAGTTGTCTTCAGGGGAAACACAGTGATGAAGGGTTACTTAAAGAA 1271 ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||| Sbjct 1257 TGTGACTATGGGTGAAGTTGTCTTCAGAGGAAACACGGTGATGAATGGTTACTTAAAGAA 1316 Query 1272 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGCGGCGACTTAGGTGT 1331 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1317 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGTGGCGACTTAGGTGT 1376 Query 1332 TAAACACCCCGACGGATACATAGAGCTCAAAGACCGATCAAAAGACATTATAATCTCTGG 1391 ||||||||| ||||||||||||||||| |||||| |||| |||||||||||||||||||| Sbjct 1377 TAAACACCCTGACGGATACATAGAGCTGAAAGACAGATCGAAAGACATTATAATCTCTGG 1436 Query 1392 AGGAGAAAACATTAGCTCGATTGAAGTCGAATCTACTCTGTTCACTCATCCTTGTGTACT 1451 |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || Sbjct 1437 AGGAGAAAACATTAGCTCGATTGAAGTCGAGTCTACTCTGTTCACTCACCCTTGTGTTCT 1496 Query 1452 TGAAGCAGCTGTTGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1511 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1497 TGAAGCAGCTGTAGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1556 Query 1512 GAAACTTAAAGATGGGTCTAAGGTCAGCGCGGAGGAGCTTATAAGTTATTGCAGGGACCG 1571 |||||||||||| |||||||||| ||| |||||||||||||| || |||||||||||||| Sbjct 1557 GAAACTTAAAGACGGGTCTAAGGCCAGTGCGGAGGAGCTTATTAGCTATTGCAGGGACCG 1616 Query 1572 GCTTCCGCATTACATGGCTCCGAGGAGTATCGTGTTTGAGGATCTTCCTAAAACATCGAC 1631 |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1617 GCTTCCACATTATATGGCTCCGAGGAGTATTGTGTTTGAGGATCTTCCTAAAACATCGAC 1676 Query 1632 TGGAAAAGTTCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGGAAGCTTATCAAA 1691 ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1677 TGGAAAAGTCCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGTAAGCTTATCAAA 1736 Query 1692 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCTCTT-TTTGTTACTTCCAATCTCTATGA 1750 ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 1737 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCT-TTCTTTGTTACTTCCAATCTCTACAA 1795 Query 1751 GATGTCTTATAAATTTATTACTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCGGAA 1810 ||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 1796 GATGTCTTATAAATT-A---CTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCAGAA 1851 Query 1811 TG-GAAAACTTAAACCAAGTTGTATGTTTCTGAAAGTAA-TAAAACCGGGATGAAATTGG 1868 || || | || ||||||| |||||||||||||||| ||| ||||||||||||||||||| Sbjct 1852 TGAGATA-CTAAAACCAATTTGTATGTTTCTGAAA-TAAATAAAACCGGGATGAAATTGT 1909 Query 1869 AATTCCGGAAAATTAGATCCCCAGCATTCTGATTA 1903 |||||||||| |||||||| ||||||||||||| Sbjct 1910 AATTCCGGAAGATTAGATCTATAGCATTCTGATTA 1944 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 96385046400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5