BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472286
Length=1946
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20560.1 | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7... 2911 0.0
> AT1G20560.1 | Symbols: AAE1 | acyl activating enzyme 1 | chr1:7119676-7121817
REVERSE LENGTH=2009
Length=2009
Score = 2911 bits (1576), Expect = 0.0
Identities = 1792/1895 (95%), Gaps = 19/1895 (1%)
Strand=Plus/Plus
Query 15 TACTACTTTTCCGGCGaaaaaaaCTAAGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 74
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 63 TACTACTTTTCCGGCGATAAAATCTATGAAAATGGAGGGAACTATCAAATCTCCGGCCAA 122
Query 75 TTACGTTCCTCTTACTCCAATCAGCTTCCTCGATCGATCTGCTGTCGTCTACGCTGACAG 134
||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 123 CTACGTTCCTCTCACTCCGATCAGCTTCCTCGATAGATCTGCTGTCGTCTACGCTGACAG 182
Query 135 AGTCTCCGTCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 194
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGTCTCCATCGTTTATGGCTCCGTCAAGTACACGTGGCGCCAGACTCGTGACCGCTGCGT 242
Query 195 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CAGAATCGCCTCCGCTCTCTCCCAGCTCGGAATCTCTACCGGAGATGTGGTTTCAGTGTT 302
Query 255 GGCCCCAAATATTCCAGCTATGGTTGAGTTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 314
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 GGCTCCAAACGTTCCAGCTATGGTTGAATTGCATTTTGGTGTTCCTATGGCTGGAGCTTT 362
Query 315 GCTCTGTACACTCAACATTCGTCATGATTC-TGCACTTGTAGCTGTCTTA-TTGAGACAT 372
|||||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||
Sbjct 363 GCTCTGTACACTCAACATTCGTCATGATTCAT-CACTTGTTGCTGTCTTGCTT-AGACAT 420
Query 373 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATTGCTCAAGGAGCTTGT 432
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 421 TCAGGGACAAAAGTGATTTTTGCAGATCATCAGTTTCTCCAAATAGCTGAAGGAGCTTGT 480
Query 433 GAAATCCTCTCGAAGAAGGGTGACAAGGTCCCTATTTTGGTCTTGGTCCCAGAGCCTCTT 492
||||||||||| || || |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 481 GAAATCCTCTCAAATAAAGGTGACAAGGTCCCGATTTTGGTCTTGATCCCAGAGCCTCTT 540
Query 493 ACTCAATCTGTTTCAGGGAAGAAGAGATCTGAGGAGGATATAATGGTCTACGAAGATGTT 552
||||||||||||||| ||||||||||||||||||| | || |||| ||||||||||||
Sbjct 541 ACTCAATCTGTTTCAAGGAAGAAGAGATCTGAGGA--A-ATGATGGAATACGAAGATGTT 597
Query 553 GTGGCGATGGGGAAATCGGATTTCGAGGTTAAACGACCAACTGATGAGTGTGATCCTATA 612
|| ||||||||||||||||| |||||||||| ||||||||| |||||||||||| |||||
Sbjct 598 GTAGCGATGGGGAAATCGGACTTCGAGGTTATACGACCAACAGATGAGTGTGATGCTATA 657
Query 613 TCTGTTAATTACACATCAGGTACCACTTCAAGTCCCAAAGGTGTTGTTTATAGTCACAGA 672
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 658 TCTGTTAATTACACATCAGGTACCACTTCAAGCCCCAAAGGTGTTGTTTATAGTCACAGA 717
Query 673 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGTGCTTATTTGAATTCTCTGGCTGCGGTTTTACTCAACGAAATGCACTCCTCGCCTACT 777
Query 733 TATCTATGGACTAATCCCATGTTTCATTGCAATGGCTGGTGCTTATTGTGGGGTGTTACC 792
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 778 TATCTATGGACTAATCCCATGTTTCACTGCAATGGCTGGTGCTTATTGTGGGGTGTTACT 837
Query 793 GCAATTGGTGGGACTAATATATGTTTGAGGAATGTGACGGCCAAGGCTATATTCGATAAT 852
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 838 GCTATTGGTGGGACTAATATATGTTTGAGGAATGTTACGGCCAAGGCTATATTTGATAAT 897
Query 853 ATTTCCCAGCATAAGGTGACTCACATGGGAGGTGCGCCAACGATATTGAATATGATTATC 912
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 898 ATTTCCCAGCATAAGGTGACTCATATGGGAGGTGCGCCGACGATATTGAATATGATCATC 957
Query 913 AATGCGCCTGAATCCGAGCAGAAACCGCTTCCCGGGAAGGTATCTTTTATAACCGGTGCT 972
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 958 AATGCGCCTGAATCTGAGCAGAAACCGCTTCCCGGGAAGGTGTCTTTTATAACCGGTGCT 1017
Query 973 GCACCTCCACCAGCTCACGTGATTTACAAGATGGAAGAGTTGGGCTTTTCTATGTTTCAT 1032
||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1018 GCACCGCCACCAGCTCATGTGATTTTCAAGATGGAAGAGTTGGGGTTTTCTATGTTTCAT 1077
Query 1033 TCCTATGGGTTAACCGAAACTTATGGACCAGGCACCATCTGTACATGGAAACCTGAGTGG 1092
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1078 TCCTATGGGTTAACTGAAACTTATGGACCAGGCACAATCTGTACATGGAAGCCTGAGTGG 1137
Query 1093 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCCCTG-CAAGGCGTGAATCATTT 1151
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||
Sbjct 1138 GACTCTTTGCCTAGAGAAGAACAGGCGAAAATGAAAGCTC-GACAAGGCGTGAATCATTT 1196
Query 1152 AGGGATCGAGGAAATACAAGTTAAAGATCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1211
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 AGGGCTCGAGGAAATACAAGTTAAAGACCCTGTAACCATGAGAACTTTGCCAGCTGATGG 1256
Query 1212 TGTGACTATGGGTGAAGTTGTCTTCAGGGGAAACACAGTGATGAAGGGTTACTTAAAGAA 1271
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1257 TGTGACTATGGGTGAAGTTGTCTTCAGAGGAAACACGGTGATGAATGGTTACTTAAAGAA 1316
Query 1272 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGCGGCGACTTAGGTGT 1331
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1317 CCCTGAAGCAACCAAGGAAGCTTTTAAAGGAGGTTGGTTTTGGAGTGGCGACTTAGGTGT 1376
Query 1332 TAAACACCCCGACGGATACATAGAGCTCAAAGACCGATCAAAAGACATTATAATCTCTGG 1391
||||||||| ||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 1377 TAAACACCCTGACGGATACATAGAGCTGAAAGACAGATCGAAAGACATTATAATCTCTGG 1436
Query 1392 AGGAGAAAACATTAGCTCGATTGAAGTCGAATCTACTCTGTTCACTCATCCTTGTGTACT 1451
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 1437 AGGAGAAAACATTAGCTCGATTGAAGTCGAGTCTACTCTGTTCACTCACCCTTGTGTTCT 1496
Query 1452 TGAAGCAGCTGTTGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1511
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGAAGCAGCTGTAGTTGCGAGGCCTGATGAGTATTGGGGTGAGACTGCTTGTGCATTTGT 1556
Query 1512 GAAACTTAAAGATGGGTCTAAGGTCAGCGCGGAGGAGCTTATAAGTTATTGCAGGGACCG 1571
|||||||||||| |||||||||| ||| |||||||||||||| || ||||||||||||||
Sbjct 1557 GAAACTTAAAGACGGGTCTAAGGCCAGTGCGGAGGAGCTTATTAGCTATTGCAGGGACCG 1616
Query 1572 GCTTCCGCATTACATGGCTCCGAGGAGTATCGTGTTTGAGGATCTTCCTAAAACATCGAC 1631
|||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1617 GCTTCCACATTATATGGCTCCGAGGAGTATTGTGTTTGAGGATCTTCCTAAAACATCGAC 1676
Query 1632 TGGAAAAGTTCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGGAAGCTTATCAAA 1691
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1677 TGGAAAAGTCCAGAAGTTTGTTCTGAGGACCAAGGCTAAGGCTTTGGTAAGCTTATCAAA 1736
Query 1692 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCTCTT-TTTGTTACTTCCAATCTCTATGA 1750
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 1737 GAAAGGCAGAAGCAAGTTATGAATTGGTAAGCT-TTCTTTGTTACTTCCAATCTCTACAA 1795
Query 1751 GATGTCTTATAAATTTATTACTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCGGAA 1810
||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 1796 GATGTCTTATAAATT-A---CTGTCTATAAGATCATGTTTGTGTCTAAGCTAAACCAGAA 1851
Query 1811 TG-GAAAACTTAAACCAAGTTGTATGTTTCTGAAAGTAA-TAAAACCGGGATGAAATTGG 1868
|| || | || ||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct 1852 TGAGATA-CTAAAACCAATTTGTATGTTTCTGAAA-TAAATAAAACCGGGATGAAATTGT 1909
Query 1869 AATTCCGGAAAATTAGATCCCCAGCATTCTGATTA 1903
|||||||||| |||||||| |||||||||||||
Sbjct 1910 AATTCCGGAAGATTAGATCTATAGCATTCTGATTA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96385046400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5