BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472290
Length=1781
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7134790-713... 2512 0.0
AT1G20590.1 | Symbols: | Cyclin family protein | chr1:7131166-... 898 0.0
> AT1G20610.1 | Symbols: CYCB2;3 | Cyclin B2;3 | chr1:7134790-7137781
REVERSE LENGTH=1833
Length=1833
Score = 2512 bits (1360), Expect = 0.0
Identities = 1559/1652 (94%), Gaps = 26/1652 (2%)
Strand=Plus/Plus
Query 1 AAAGATagagagagagagagagTGAGGGATCTTCAATATCGAAGCCATTAGAGGGAAAGA 60
||||| ||| |||||||||| | || | |||||||| | |||||||||||||| ||||||
Sbjct 3 AAAGAGAGATAGAGAGAGAGTGGGAAGTATCTTCAAAACCGAAGCCATTAGAGAGAAAGA 62
Query 61 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GAGCGTGGTTGAATCTTTGGGTTTTACTAAAAGATCTCTCTTTCTCTCCTTTGTTTGATC 122
Query 121 AACTTGGATCCAACGGG-GAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTC-TGA 178
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 123 AACTTGGATCCAACGGGATAAAAGACTATTAGGGTTTAGGAGATTCACTGGGTTTCAT-A 181
Query 179 AGAATCTGTGATCAAGGGA-CAAGGGTTGACTTAATTTTGCGGTGGTTCTTTGAATTGAC 237
||||| | | || || ||||||| |||||||| | ||| |||||||||||||||||
Sbjct 182 AGAAT-T-T-AT-----GATCAAGGGTCGACTTAATCTCGCGTTGGTTCTTTGAATTGAC 233
Query 238 TGTAAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TGTGAAAAGATAACGAAGAAGAAGAAAATGGTTAGATCAGATGAAAATAGCCTTGGATTA 293
Query 298 ATCGGATCAATGAGTCTCCAA---GGCGGAG--G-AGGAAAGATCAAGACGACGGCAACA 351
||||||||||||||||||||| || |||| | |||||||||||||||||||||||||
Sbjct 294 ATCGGATCAATGAGTCTCCAAGGGGGAGGAGTAGTAGGAAAGATCAAGACGACGGCAACA 353
Query 352 ACAGGACCGACCAGAAGAGCACTAAGCACTATTAACAAGAACATCATTGAAGCGCCGTCT 411
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 354 ACAGGACCGACAAGAAGAGCACTAAGTACTATTAACAAGAACATCACTGAAGCGCCGTCT 413
Query 412 TACCCTTATGCTGTCAACAAAAGATCACTGTCTGAAAGGGATGGCATCTGTAATAAACCA 471
|||||||||||||||||||| |||||| | |||||||| |||||||| ||||||||||||
Sbjct 414 TACCCTTATGCTGTCAACAAGAGATCAGTTTCTGAAAGAGATGGCATTTGTAATAAACCA 473
Query 472 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCAGAAGCCACAA 531
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 474 CCTGTGCATCGACCAGTTACTAGGAAGTTTGCTGCTCAGTTAGCAGATCATAAGCCACAT 533
Query 532 ATCCGTGAGGAGGAAACTAAGAAACCAGACTCGGTTTCAAGCGAAGAACCAGAGAGGATT 591
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 534 ATCCGTGATGAGGAAACTAAGAAACCAGACTCAGTTTCAAGTGAAGAACCAGAGACGATT 593
Query 592 ATCATTGATGGGGATGATAGTGAGACAGAAGGAGGCGACTTTAATGAGCCAATGTTTGTT 651
|||||||||| |||||| ||||| | ||||||||| |||| ||||||||||||||||||
Sbjct 594 ATCATTGATGTGGATGAAAGTGATAAAGAAGGAGGTGACTCTAATGAGCCAATGTTTGTA 653
Query 652 CAACACACTGAAGCAATGCTGGAGGAGATTGACCAGAAGGAGAAGGAGATTGAAATGGAA 711
||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 654 CAACATACTGAAGCAATGCTGGAGGAGATTGAACAGATGGAGAAGGAGATTGAAATGGAA 713
Query 712 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAAAAGAATCCT 771
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 714 GATGCAGACAAAGAAGAAGAGCCTGTGATCGATATTGATGCCTGTGATAAGAATAATCCT 773
Query 772 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TTGGCTGCGGTTGAATATATCCATGATATGCATACCTTCTACAAGAATTTTGAGAAACTT 833
Query 832 AGTTGTGTGCCTCCTAACTACATGGACAATCAACAAGATCTTAATGAGAGGATGAGAGGA 891
||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 834 AGTTGCGTGCCTCCTAACTATATGGACAATCAACAAGATCTTAATGAGAGAATGAGAGGA 893
Query 892 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAGCTGATGGAAGAAACTCTT 951
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 894 ATCCTCATTGACTGGTTAATTGAGGTGCACTACAAGTTTGAACTGATGGAGGAAACTCTT 953
Query 952 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCTTGAGGAAAAAG 1011
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 TATCTCACAATCAATGTCATCGACAGATTCCTTGCGGTTCATCAAATCGTGAGGAAAAAG 1013
Query 1012 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAGTATGAAGAAGTTTCAGTT 1071
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1014 CTTCAGCTTGTTGGTGTTACTGCTTTGTTGCTTGCATGTAAATATGAAGAAGTTTCAGTT 1073
Query 1072 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACACTAGAAGAGAAGTGCTA 1131
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 CCAGTGGTAGATGATCTCATCTTGATCTCTGACAAAGCTTACTCTAGAAGAGAAGTGCTA 1133
Query 1132 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 GATATGGAGAAGCTAATGGCCAACACCTTGCAATTCAATTTCTCTCTACCAACTCCATAT 1193
Query 1192 GTTTTCATGAAACGCTTTCTCAAAGCTGCCCAATCTGACAAAAAGCTTGAGGTTTTATCG 1251
|||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1194 GTTTTCATGAAACGATTTCTCAAAGCTGCCCAATCTGACAAGAAGCTTGAGATTTTATCA 1253
Query 1252 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTGAG 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1254 TTCTTTATGATCGAGCTTTGCCTTGTGGAGTATGAGATGCTAGAGTATCTTCCATCTAAG 1313
Query 1312 CTTGCGGCCTCGGCAATCTACACTGCTCAGTGTACAGTTAAGGGATTTGAAGAATGGAGC 1371
|| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1314 CTGGCGGCCTCAGCAATCTACACTGCTCAGTGTACACTTAAGGGATTTGAAGAATGGAGC 1373
Query 1372 AAAACCTGTGAGTTTCACACAGGCTACAAGGAAGAACAGCTACTGGAATGTGCGAGAAAG 1431
||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 1374 AAAACCTGTGAGTTTCACACAGGCTACAACGAAAAACAGCTACTGGCATGTGCGAGAAAG 1433
Query 1432 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGGAAGTAC 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1434 ATGGTTGCTTTCCATCACAAGGCAGGAACAGGGAAGCTCACAGGAGTTCACAGAAAGTAC 1493
Query 1492 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGCTTTAATGG 1551
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1494 AACACATCTAAGTTCTGTCATGCTGCAAGAACTGAACCAGCTGGGTTTCTGATTTAAT-- 1551
Query 1552 AATAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTTGAA-AAA--GAGTgagag 1608
| ||||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||
Sbjct 1552 ATTAATAAGAATCTAATATGACTTAACTCGAGTTTTTCTTTAGAACAAAAAGAGTGTGAG 1611
Query 1609 agagagagagaTAG-AG--CAAGTTGCCCAAA 1637
||| |||||||||| || |||||||||||||
Sbjct 1612 AGAAAGAGAGATAGTAGAGCAAGTTGCCCAAA 1643
Score = 178 bits (96), Expect = 2e-43
Identities = 130/145 (90%), Gaps = 8/145 (6%)
Strand=Plus/Plus
Query 1637 ATTCTTCTCTTTTTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGATGCA 1696
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1697 ATTCTTCTCTTTCTAAGGTCTTTAGATCTTTCTTCACTTGAGAGAGAATAAAAAGA---A 1753
Query 1697 GTCAGTCTTTTGATATCATGTTTTCCTATATTCAAATTGTGAATCGATCCTTGTATAGAC 1756
|| ||| ||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 1754 -TCT-TCT---GATATCATGCTTTCCTATATTCAACTTGTGAATCGATTCTTGTATAGAC 1808
Query 1757 TCAGGAAAATCTATGACCCATTTTG 1781
|||||||||||||||| ||| ||||
Sbjct 1809 TCAGGAAAATCTATGATCCAGTTTG 1833
> AT1G20590.1 | Symbols: | Cyclin family protein | chr1:7131166-7132183
REVERSE LENGTH=600
Length=600
Score = 898 bits (486), Expect = 0.0
Identities = 547/575 (95%), Gaps = 10/575 (2%)
Strand=Plus/Plus
Query 978 ATTCCTTGCGGTTCATCAAATCTTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTT 1037
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 6 ATTCCTTGCGGTTCATCAAATCGTGAGGAAAAAGCTTCAGCTTGTTGGTGTTACTGCTTT 65
Query 1038 GTTGCTTGCATGTAAGTATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGAT 1097
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 GTTGCTCGCATGTAAATATGAAGAAGTTTCAGTTCCAGTGGTAGATGATCTCATCTTGAT 125
Query 1098 CTCTGACAAAGCTTACACTAGAAGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACAC 1157
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CTCTGACAAAGCTTACTCTAGAAGAGAAGTGCTAGATATGGAGAAGCTAATGGCCAACAC 185
Query 1158 CTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGCTTTCTCAAAGC 1217
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 186 CTTGCAATTCAATTTCTCTCTACCAACTCCATATGTTTTCATGAAACGATTTCTCAAAGC 245
Query 1218 TGCCCAATCTGACAAAAAGCTTGAGGTTTTATCGTTCTTTATGATCGAGCTTTGCCTTGT 1277
||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 246 TGCCCAATCTGACAAGAAGCTTGAGATTTTATCATTCTTTATGATCGAGCTTTGCCTTGT 305
Query 1278 GGAGTATGAGATGCTAGAGTATCTTCCATCTGAGCTTGCGGCCTCGGCAATCTACACTGC 1337
||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 306 GGAGTATGAGATGCTAGAGTATCTTCCATCTAAGCTGGCGGCCTCAGCAATCTACACTGC 365
Query 1338 TCAGTGTACAGTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGCTA 1397
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TCAGTGTACACTTAAGGGATTTGAAGAATGGAGCAAAACCTGTGAGTTTCACACAGGCTA 425
Query 1398 CAAGGAAGAACAGCTACTGGAATGTGCGAGAAAGATGGTTGCTTTCCATCACAAGGCAGG 1457
||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 426 CAACGAAGAACAGCTACTGGCATGTGCGAGAAAGATGGTTGCTTTTCATCACAAGGCAGG 485
Query 1458 AACAGGGAAGCTCACAGGAGTTCACAGGAAGTACAACACATCTAAGTTCTGTCATGCTGC 1517
||||||||||||||||||| | | ||||||||||||||||||| |||||||||
Sbjct 486 AACAGGGAAGCTCACAGGA----A--G----TACAACACATCTAAGTTCTTTCATGCTGC 535
Query 1518 AAGAACTGAACCAGCTGGGTTTCTGCTTTAATGGA 1552
||||| ||||||||||||||||||||||||| |||
Sbjct 536 AAGAAGTGAACCAGCTGGGTTTCTGCTTTAAGGGA 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88101956475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5