BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472300
Length=2301
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20670.1 | Symbols: | DNA-binding bromodomain-containing pr... 2837 0.0
> AT1G20670.1 | Symbols: | DNA-binding bromodomain-containing
protein | chr1:7164190-7168021 REVERSE LENGTH=2394
Length=2394
Score = 2837 bits (1536), Expect = 0.0
Identities = 1759/1863 (94%), Gaps = 29/1863 (2%)
Strand=Plus/Plus
Query 461 GGAGAAAAGGGATCGAAAGCGACAGACATTCTTCAAGGGTCTCCCGTGGAGTCTGGCCCC 520
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 539 GGAGAAAAGGCTTCGAAAGCGACAGACATTCTTCAAGGGTCTCCCGTGGAGTCTGGTCCC 598
Query 521 ACTACACCTTTGCCTGACAAAAAGTTGTTAGTCTTCATCCTCGATAGACTTCAAAAGAAG 580
||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 ACTACTCCTTTGCCAGACAAAAAGTTGTTACTCTTCATCCTCGATAGACTTCAAAAGAAG 658
Query 581 GATACTTATGGCGTTTACTCTGACCCTGTTGATCCTGAGGAGCTTCCTGATTATCATGAG 640
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 659 GATACTTATGGAGTTTACTCTGACCCGGTTGATCCTGAGGAGCTTCCTGATTATTTTGAG 718
Query 641 ATTATTACGAATCCAATGGATTTTAGCACATTGCGGAAGAAATTAGACTCTGGAGCATAT 700
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 719 ATTATTAAGAATCCAATGGATTTTAGCACATTGCGGAACAAATTAGACTCTGGAGCATAT 778
Query 701 GCCACTTTAGAACAATTTGAGAGAGATGTGTTTTTAATATGTACAAATGCAATGGAATAC 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCACTTTAGAACAATTTGAGAGAGATGTGTTTTTAATATGTACAAATGCAATGGAATAC 838
Query 761 AATTCAGCAGACACTGTATATTATCGACAGGCACGGGCTATACAAGAGTTGGCAAAAAAG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AATTCAGCAGACACTGTATATTATCGACAGGCACGGGCTATACAAGAGTTGGCAAAAAAG 898
Query 821 GACTTTGAGAATTTAAGGCAAGACAGTGATGATGAAGAACCACAAAGCCAACAACAACAA 880
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 GATTTTGAGAATTTAAGGCAAGACAGTGATGATGAAGAACCACAAAGCCAACAACAGCAA 958
Query 881 CAGCAGCAACCAAAAGTTGCCAGAAGAGGCCGTCCGCCAAAGAAACAGCCTGAACCATTT 940
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
Sbjct 959 CAGCAGCAACCAAAAGTTGCAAGAAGAGGCCGTCCGCCAAAGAAACATCCTGAACCATCT 1018
Query 941 TCTATTGACCGAACTGCTTCTGAAATTTCAGCTGATGCTCTCATTCCTGGAGATAGCTCT 1000
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 TCTATTGACCGCACTGCTTCTGAAATTTCAGCTGATGCTCTCATTCCTGGAGATAGCTCT 1078
Query 1001 AATAAGTTTTCTGGTGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGTCAA 1060
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 AACAAGTTTTCTGGTGCTTACAATTTAAGAAAGGCTCCTCCTTCATACAAATTCCGCCAA 1138
Query 1061 GCAGAATCATCAGTTAGAATCAATCATAACAGCGAAACCCAAAGTGGTTGGTCGGTAGAC 1120
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1139 GCAGAATCATCAGTTAGAATCAATCATAACAGTGAAACCCAGAGTGGTTGGTCGGTAGAC 1198
Query 1121 TGGGAGAATGAATTTCCATCTTCGGTTGTGAAAGCGGTGAACAAGTATGGGATGAAACAT 1180
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1199 TGGGAGAGCGAATTTCCATCTTCGGTTGTGAAGGCGGTTAACAAGTATGGGATGAAACAT 1258
Query 1181 TTCAATGTGGATGATAACAGACGCGATACCTACAACCACCTCTCGACTTCTACCCAGGAA 1240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1259 TTCAATGTCGATGATAACAGACGCGATACCTACAACCACCTCTCGACTTCTACCCAAGAA 1318
Query 1241 CCGTCGGTTTTGACAACGCTTGAAGACGAGTTAAAACAGTTAATTCCAGTTGGGCTGAAC 1300
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 CCATCGGTTTTGACAACGCTTGAAGACGAGTTAAAACAGTTGATTCCAGTTGGGCTGAAC 1378
Query 1301 ATGGAGTACGGTTATGCAAAGAGTCTAGCACGATATGCTGCAAATATCGGTCCTGTTGCC 1360
|||||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1379 ATGGAGTACGGTTACGCGAAGAGTCTAGCACGATATGCTGCAAATCTTGGTCCTGTTGCC 1438
Query 1361 TGGAAAATTGCATCGAGGAGAATCGAGACTGTATTGCCCTCTGGAATAAAATTTGGTCAA 1420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1439 TGGAAAATTGCATCGAGGAGAATCGAGACTGTATTGCCCTCTGGAATCAAATTTGGTCAA 1498
Query 1421 GGTTGGGTTGGAGAGAACCCAGCAGGTCCTGAAGAGGATGATTCTCAGAAACAAAACTTA 1480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1499 GGTTGGGTTGGAGAGAACCCAGCAGGACCTGAAGAGGATGATTCTCAGAAACAAAACATA 1558
Query 1481 TTAATGTCGTCCGGAAAACAAAAGTGTTCTAATGACTTAGCCTCTGATGATCATTCGAAC 1540
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1559 TTAATGTCGTCGGGAAAACAAAAGTGTTCTAATGACTTAGCGTCTGATGATCATTCTAAC 1618
Query 1541 AGAATCCTGTCTCCAACCGCTTCAGTCTCGAGCGCTTTCATAGGAAACAGACATTCTTCT 1600
|||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||
Sbjct 1619 AGAATCCTGTCTCCAACCGCTTCAGTTTCAAGTGCTTTCATAGGAAACAGACATGCTTCC 1678
Query 1601 TCTCAACCCATCGAAGAGACTGCACCACCACCTGC--G-------AATCCAGAAATTGAT 1651
|||||| ||||||||||||| ||||||||||||| | ||||||||||| |||
Sbjct 1679 TCTCAAGCCATCGAAGAGACCACACCACCACCTGCTCGTGTCTTGAATCCAGAAATCGAT 1738
Query 1652 CACCCATCATCCTCCTCTCACCAGGCAGGACCACTAATCAAAACAGAGAGCAGCAACGGC 1711
|||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1739 CACCCATCCTCCTCCTCTCACCAAGCAGGACTGCTAATCAAAACAGAGAGCAGCAACGGC 1798
Query 1712 CTCATCCGCGGATTCAGCCATAATGCAAATCAGATGCTCGGAATTGCGAGACAGCAACAA 1771
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1799 CTCATCCGCGGATTCAACCATAATGCAAATCAGATGCTCGGAATTGCTAGACAGCAACAA 1858
Query 1772 CCAAACGTAAGCAATGAGGCCACACCGGGCTCGCAACAACAAGGGTCATTGTTTCCTTAC 1831
|||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1859 CCAAACGTAAGCAACGAGGCCACACCGGTCTCGCAACAACAAGGCTCATTGTTTCCTTAC 1918
Query 1832 ACCAAACAGGAATTCCACCGGTTTCCGCCGGACCTTAACGCTAGGCTAGTCTCACCGAAC 1891
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1919 CCCAAACAAGAATTCCACCGGTTTCCGCCAGACCTTAACGCTAGGCTAGTCTCACCAAAC 1978
Query 1892 TCCCCGGGCTCTAATCAGCAGACTGGTTCTTCCTCGTCGCAGCATCCGGATCTGGCATTA 1951
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1979 TCCCCGGGCTCTAATCAGCAGACTGGTTCGTCCTCGTCGCAGCATCCGGATCTGGCATTA 2038
Query 1952 CAGCTCTGAAGATGAGTAT-GGATATTTGAAAGAAGAAGAAGAGGCATTTTCCATTGGCT 2010
||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 2039 CAGCTGTGAAGATGAGTATTGGATATTTGAAAGAGGAAGAAGAGGCATTTTCCATTGGCT 2098
Query 2011 ATCTCAGCCATAG-ATTTTCTGGAATGAAATCTTGTGGAAAGTCATGGCTTATTTGTTGT 2069
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2099 ATCTCAGCCA-AGGATTTTCTGGAATGAAATCTTGTGGAAAGTCAAGGCTTATTTGTTGT 2157
Query 2070 GACATGAAAATATATGGGACAAGTCTCTCTCTCTATTGTACAGATTGTTGCAACTTCCAT 2129
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 2158 GACATGAAAATATATGGGACAAGTCTCTCTCTAT-TTGTACAGATTGTTGCAACTTCCAT 2216
Query 2130 AAtttttttAGGGGTaaaaagagaaaacaagaagaaaaagaaaaaaCCACAGGAGTCACG 2189
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct 2217 AATTTTTTTAGGGGTAAAAAGAGAAAACAAGAGGGAAAAGAAAAA-CCACAGGAGTCACG 2275
Query 2190 CAGGCTGTAGAATATATAATTT-T-TTCTTT-C-C------C-AGAATTTTTCAGATATA 2238
|||||||||||||||||| ||| | || ||| | | | |||| ||||||||||||
Sbjct 2276 CAGGCTGTAGAATATATAGTTTATATTTTTTTCTCATTTTTCTAGAAATTTTCAGATATA 2335
Query 2239 TTTTCGTTATGTTCTTCTAACCTTGGCCATAAAACAAAGTAATGTTAGATTTGTGTCCTT 2298
||||||| |||| | |||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 2336 TTTTCGT-ATGT-C--CTAATCTTGGCCATAAAACAAAGTAATGTTAGGTTTGTGTCCTT 2391
Query 2299 GGC 2301
|||
Sbjct 2392 GGC 2394
Score = 427 bits (231), Expect = 2e-118
Identities = 370/428 (86%), Gaps = 46/428 (11%)
Strand=Plus/Plus
Query 1 Tagagagagaaagaggag-agagaagagag-agaaaatgggtgaggtagcagatacaatg 58
|||||||||||||| ||| |||| |||||| | |||||||||||||||||||||||||||
Sbjct 53 TAGAGAGAGAAAGAAGAGAAGAGGAGAGAGAAAAAAATGGGTGAGGTAGCAGATACAATG 112
Query 59 acgaagaagaagaagaaaggaagGCCATCTCTATTAGACCTTCAAAAACGAGCTATcaaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 113 ACGAAGAAGAAGAAGAAAGGAAGGCCATCTCTATTAGACCTTCAAAAACGAGCTATCAAA 172
Query 119 caacaacaacaacaa---ca---gcaacaacaaca-ca-a-gaac--c-atcaagaagac 166
||||||||||||||| || |||||||||||| || | |||| | ||||||| |||
Sbjct 173 CAACAACAACAACAATTACAACAGCAACAACAACAACACAAGAACAACCATCAAGACGAC 232
Query 167 gatgaccac-a--ac--ca-caacaaTAGATCCGGCTCCAAAAACCCTAATTCTCTCCAT 220
||||||||| | || || |||||||||||||||||| |||||||||||||||||| |
Sbjct 233 GATGACCACCACCACAACAACAACAATAGATCCGGCTCGAAAAACCCTAATTCTCTC-A- 290
Query 221 CACAATCCCAACTCCGCCTCCCGATCCAAACGCCGGAACCCTAATTCAAACGGCGTATCT 280
| || | | | | ||||||||||||||||||||||||||||| || |
Sbjct 291 -A---TC--A-C-C-G-------ATCCAAACGCCGGAACCCTAATTCAAACGACGG--C- 331
Query 281 TCCGATTCCCCTTGGATCAAAGACGAAGCTGCAGAGGAA-GACGATGACGAGCGGCGGGA 339
||||||||||||||||||||||||| || ||| || ||||||||||||||||| ||
Sbjct 332 ---GATTCCCCTTGGATCAAAGACGAAGGTGAAGAC-AACGACGATGACGAGCGGCGAGA 387
Query 340 GAAGAAACATAAGCTTTTACATGGATTGAACTCTCACTCTCATCGACATTCCCCTAATTC 399
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 388 GAAGAAACATAAGCTTTTACATGGATTGAACTCTCACTCTCATCGACATTCTCCTAATTC 447
Query 400 TCAATCCG 407
||||||||
Sbjct 448 TCAATCCG 455
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114206239875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5