BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472304
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group... 1188 0.0
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mo... 527 7e-149
> AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group
B3 | chr1:7179453-7181499 FORWARD LENGTH=931
Length=931
Score = 1188 bits (643), Expect = 0.0
Identities = 802/874 (92%), Gaps = 29/874 (3%)
Strand=Plus/Plus
Query 1 CATCAGATATTTTAACATCCCCCACTTAACCCTCTCATCTCTCGGCCTCTCACTCGAATC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 CATAAGATATTTTAACATCCCCCACTTAACCCTCTCATCTCTCGGCCTCTCACTCGAATC 69
Query 61 TCCTTCACAAAGCGTACAATTCACAAACACCTTGTTATtctctctttactctctctctat 120
||||||||||||||||||| |||||||||| | ||||||||||||||| ||||||||||
Sbjct 70 TCCTTCACAAAGCGTACAAATCACAAACACGTAGTTATTCTCTCTTTA--CTCTCTCTAT 127
Query 121 ttctctctctTCAACCCCTACGAAGATCTTCTTCTTCGTCTT---G-ATCGATCATGAAA 176
|||||||||||||| |||||||||||||||||||||| |||| | |||||||||||||
Sbjct 128 TTCTCTCTCTTCAAACCCTACGAAGATCTTCTTCTTCTTCTTCAAGAATCGATCATGAAA 187
Query 177 GGAGGTAAATCCAAGACTGAAACCAGGAGCGCAAAGCTCTCTGTGACTAAGAAGCCTGCC 236
|||| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 188 GGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAGCTCTCTGTGACTAAGAAGCCTGCT 247
Query 237 AAGGGAGGCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGACCTTCCAGTGCCTTC 296
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 248 AAGGGAGCCAAAGGTGCTGCTAAAGATCCAAACAAACCTAAGAGGCCTTCCAGTGCCTTC 307
Query 297 TTCGTTTTCATGGAAGATTTCCGTGAGACGTACAAGAAGGAGCACCCCAAGAACAAGTCT 356
||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 308 TTCGTTTTCATGGAAGATTTCCGTGTGACGTACAAGGAGGAGCACCCTAAGAACAAGTCT 367
Query 357 GTCGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAG 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GTTGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTGAGAAG 427
Query 417 GCTCCTTATGTGGCTAAGGCGGACAAGCGTAAGGTTGAGTATGAGAAGAACATGAAAGCC 476
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 428 GCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCC 487
Query 477 TACAACAAGAAACTGGAGGAAG-GTCCAAAGGAAGATGAGGAATCTGACAAGTCAGTCTC 535
|||||||||||| ||| || | || ||||||||||||||||||||||||||||| ||
Sbjct 488 TACAACAAGAAATTGGT--AATTGCCCTAAGGAAGATGAGGAATCTGACAAGTCAGTTTC 545
Query 536 AGAGGTGAACGATGAAGATGATGCTGAGGATGGGAGTGAAGAGGTAAGGGGTTGAGAAGA 595
|||||| |||||||| ||||||||||||||||| |||||||||| | || | | ||
Sbjct 546 AGAGGTTAACGATGAGGATGATGCTGAGGATGGCAGTGAAGAGG-A-GG-----A-A-GA 596
Query 596 CGATGACTAAGAAGTTGAAGTTATGGTAGCATAATATAGAAGGCTGCAAGGAATCTCTCG 655
|||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 597 CGATGATTAAGAAGTTGAAGTTGTGGTAGCGTAATATAGAAGGCTGCAAGGAATCTCTCG 656
Query 656 GATGTTTTTTATCTCTTCTCTTAAATTGTTCATTCGGCTGGTTAAAGTGGGTCttttttt 715
||||||||| ||||| ||||||||| |||| |||||| |||||||||||| | |||||||
Sbjct 657 GATGTTTTT-ATCTCCTCTCTTAAAATGTTAATTCGGGTGGTTAAAGTGGTTTTTTTTTT 715
Query 716 ttttctctttcttttt-t-ACTGATGTTTCGTTTTAGTAAGCAATCACCTATCTTCCCAC 773
|||||| ||||||||| | ||||||||||||||||||||| | || |||||||| |||||
Sbjct 716 TTTTCTTTTTCTTTTTCTTACTGATGTTTCGTTTTAGTAAACTATTACCTATCT-CCCAC 774
Query 774 TGATTCTACGGGTAATGGAAAAAGT-A-TGTAGAATGTTTAGATG---AA-TGAGAGATT 827
||||||||||||||||||||||||| | ||||||||||||||||| || |||||||||
Sbjct 775 TGATTCTACGGGTAATGGAAAAAGTGAATGTAGAATGTTTAGATGGTGAAATGAGAGATT 834
Query 828 TGCAGCTTTATATAATGAATGATTTAGCTTTTTA 861
|| |||| ||||||||||||||||||| ||||||
Sbjct 835 TGTAGCTCTATATAATGAATGATTTAG-TTTTTA 867
> AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7176775-7178820 FORWARD LENGTH=954
Length=954
Score = 527 bits (285), Expect = 7e-149
Identities = 483/574 (84%), Gaps = 31/574 (5%)
Strand=Plus/Plus
Query 164 ATCGATCATGAAAGGAGGTAAATCCAAGACTGAAACCAGGAGCGCAAAGCTCTCTGTGAC 223
||| || |||||||||| |||||| |||||||||||||||||| | ||||||||||||||
Sbjct 180 ATCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGAC 239
Query 224 TAAGAAGCCTGC-CAAGG-G-A------GGCAAAGGTGCTGCTAAAGATCCAAACAAACC 274
|||||||| || |||| | | ||||||| ||||||||| || || ||||||||
Sbjct 240 CAAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCTGCTGCTAAGGACCCCAACAAACC 299
Query 275 TAAGAGACCTTCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACGTACAAGAA 334
||||| || ||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 300 AAAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAA 359
Query 335 GGAGCACCCCAAGAACAAGTCTGTCGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAA 394
||| ||||||||||||||||||| ||| ||||||| ||||||| ||| || ||||||||
Sbjct 360 GGAAAACCCCAAGAACAAGTCTGTAGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAA 419
Query 395 ATCCTTGTCTGACTCTGAGAAGGCTCCTTATGTGGCTAAGGCGGACAAGCGTAAGGTTGA 454
||||||||||| |||||||| ||||||||||| |||||||| || || || ||||||||
Sbjct 420 GTCCTTGTCTGATTCTGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGA 479
Query 455 GTATGAGAAGAACATGAAAGCCTACAACAAGAAACTGGAGGAAGGTCCAAAGGAAGATGA 514
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 480 ATATGAGAAGAACATTAAAGCTTACAACAAGAAACTGGAGGAAGGTCCAAAAGAAGATGA 539
Query 515 GGAATCTGACAAGTCAGTCTCAGAGGTGAACGATGAAGATGATGCTGAGGATGGGAGTGA 574
|||||||||||||||||| |||||||| || || || ||||||||||||||||| |||||
Sbjct 540 GGAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGA 599
Query 575 AGAGGTAAGGGGTTGAGAAGACGATGACTAAGAAGTTGAA-GTTATGGTAGCATAA-TAT 632
||||| | || || |||||||||||||||| |||| ||| |||||||| | |||
Sbjct 600 AGAGG-A-GG-----AG--GACGATGACTAAGAAGCTGAATGTT--GGTAGCATTAGTAT 648
Query 633 AGAAGGCTGCAAGGAATCTCTCGGATGTTTTTTATCTCTTCTCTT-AAATTGTTCATTCG 691
||| |||||||| |||||||| ||||||| |||| || ||| |||| ||| | |
Sbjct 649 AGATGGCTGCAAA-AATCTCTC---TGTTTTT-ATCT-TTA-CTTGAAAT-GTTAACGGG 700
Query 692 GCTGGTTAAAGTGGGTCtttttttttttctcttt 725
|||| ||||| ||||||||| ||||| ||| |||
Sbjct 701 GCTGATTAAAATGGGTCTTTCTTTTTATCTTTTT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5