BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472310
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20740.1 | Symbols: | Protein of unknown function (DUF833) ... 854 0.0
AT1G20730.1 | Symbols: | Protein of unknown function (DUF833) ... 665 0.0
> AT1G20740.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7200394-7201538 FORWARD LENGTH=801
Length=801
Score = 854 bits (462), Expect = 0.0
Identities = 709/822 (86%), Gaps = 42/822 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 60
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGGGAGAGGGAGAAAACACACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATTAAG 60
Query 61 GC--A-A--GTT--T-AA---AATTCT-T-TCGACG--TGTTAGGTCAATAAGAAAGGCG 105
|| | | ||| | || |||| | ||| || || ||||||||||||||| |
Sbjct 61 GCAAACATTGTTGATGAACCTTTTTCTGTATCGGCGATTGATAGGTCAATAAGAAA---G 117
Query 106 GCTTGGGAACGGGATGAAACTGGAACTTACCAGATATTGAGTGGTCGTTGCGAAGAGACC 165
|| |||| ||| | |||||| |||| |||||||||| |||||||||||| |||||||
Sbjct 118 GC---GGAATGGGTTAAAACTGAAACTGACCAGATATTAAGTGGTCGTTGCCCAGAGACC 174
Query 166 GATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCTTTTCTTGTGGATGCATGG 225
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 175 GATGGGACGTGGTTAGGTATTTCTACTCGAGGCCGAGTCGCTTTTCTTGTGGAGGCA-GG 233
Query 226 CCCCTACTTGTCA-ATGACAGATTCATCGGTGCCGAGCGTCGTACTCTTGAGTTCTTAGA 284
||| || || | |||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 234 -GACTA-TTAACAGA-GACAGATTCAACGGCGCCGAGAGTCGTACTCTTGAGTTCTTAGA 290
Query 285 GAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTGGCTGCAGA-TACCGGACATACCG 343
||||||||||||||||||||||||||||||||||| ||||||||| || | || ||
Sbjct 291 GAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATCGGCTGCAGATTA-CATACGTA--A 347
Query 344 CACGTAACACGCAGATATCCTATCAGCTAATTGTGGCCGACATAGCTTCAAACTCAATGT 403
|| | |||| ||| ||| ||| |||||||||||||||||||||||||||||||||
Sbjct 348 CAAG-AACA--CAG-CCGCCTTTCATCTAATTGTGGCCGACATAGCTTCAAACTCAATGC 403
Query 404 TTTATATCTCCAAACCATC-TTTGTCTGAAAATGGCATTGTCCATATAGAGCCTGTTGGT 462
|||||||||||||||| | ||| ||||| ||||||||||| ||| |||||||||||||
Sbjct 404 TTTATATCTCCAAACC-GCGTTTCTCTGACTATGGCATTGTCTATACAGAGCCTGTTGGT 462
Query 463 CCTGGTGTTCATACCCTATCTTCAGATGGACTCGATTCCGAAGATGGACGCAGGGACTTA 522
||||||||||| || |||||||||| ||||||||||||||| | |||| ||||||||||
Sbjct 463 CCTGGTGTTCACACACTATCTTCAGCTGGACTCGATTCCGACGTTGGATACAGGGACTTA 522
Query 523 CATCTGAAAAACTCTTTTGGTGAGATGATTAACAGAGAACGACTACCACCAATAAGGGAG 582
| | ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 523 CGTATGAGACACTCTTTTTGTGAGATGATTAACAGAGAACGACTACCACCAATAAGGGA- 581
Query 583 C-TTGCT-AGGATTATGTATGATCCAGTCAGAGCTTACGAAAGAGTCCCACTGATG-TCT 639
| ||||| || ||||||||||||||||||| |||||||||||| || | ||||| | |||
Sbjct 582 CATTGCTGAG-ATTATGTATGATCCAGTCAAAGCTTACGAAAGCGTGCTACTGA-GCTCT 639
Query 640 ATTTTTGTCGTCGACATGAGGATTGGATCCGAACACTATGGAACAAGAAGTACGACAGCA 699
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 640 ATTTTTTTCGTCGACATGAAGATTGGATACGAACACTATGGAACAAGAATTACGACAGCA 699
Query 700 TTGGTGGTGAAACGCACCAACGACGTGATGTTCTTTGAGAGGTACAGGGAGAAATTTAAT 759
||||| |||||||||||||| || ||| |||||||||||||||||||||||| |||||||
Sbjct 700 TTGGTTGTGAAACGCACCAAGGAAGTGTTGTTCTTTGAGAGGTACAGGGAGATATTTAAT 759
Query 760 GATAACTGGGAAGATCACGACTTCGCGTTCACCATCATCTAG 801
||| | ||||| || |||||||||||||||||||||||||||
Sbjct 760 GATGATTGGGACGACCACGACTTCGCGTTCACCATCATCTAG 801
> AT1G20730.1 | Symbols: | Protein of unknown function (DUF833)
| chr1:7194256-7195575 FORWARD LENGTH=946
Length=946
Score = 665 bits (360), Expect = 0.0
Identities = 609/722 (84%), Gaps = 46/722 (6%)
Strand=Plus/Plus
Query 88 AGGTCAATAAGAAAGGCGGCTTGGGAACGGGATGAAACTGGAACTTACCAGATATTGAGT 147
||||||||| ||||||||||||||||| ||||||||| | |||| ||||||||
Sbjct 79 AGGTCAATAGGAAAGGCGGCTTGGGAATGGGATGAAA---G------CCAGGTATTGAGT 129
Query 148 GGTCGTTGCGAAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 207
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GGTCGTTGCGCAGAGACCGATGGGACGTGGTTAGGTATTTCTATTCGAGGCCGAGTCGCT 189
Query 208 TTTCTTGTGGATGCATGGCCCCTACTTGTCA-ATGACAGATTCATCGGTGCCGAGCGTCG 266
||||||||||| ||| || ||| || || | |||||| ||||||| |||||| ||||
Sbjct 190 TTTCTTGTGGAGGCA-GGGCCC--GTTAACAGA-GACAGAATCATCGGCGCCGAGTGTCG 245
Query 267 TACTCTTGAGTTCTTAGAGAGCAACGAGAGTCCAGAGGACTTTGCAAAGTCATTGGCTGC 326
||||||||| |||||| |||||||| ||||||||||||||||||| | |||||||||
Sbjct 246 TACTCTTGATTTCTTAAAGAGCAACTTGAGTCCAGAGGACTTTGCAGATTCATTGGCT-- 303
Query 327 AGATACCGGACATACCGCACGTAACACGCAGATATCCTATCAGCTAATTGTGGCCGACAT 386
|| | || ||| |||||||||| |||| ||||||| |||||||||||||||||
Sbjct 304 --TTA---G--ATTCCGGACGTAACACGGGGATAGCCTATCATCTAATTGTGGCCGACAT 356
Query 387 AGCTTCAAACTCAATGTTTTATATCTCCAAACCATCTTTGTCTGAAAATGGCATTGTCCA 446
|| ||||||||||||||||||||||| |||||| |||||||||||| ||||||| ||| |
Sbjct 357 AGTTTCAAACTCAATGTTTTATATCTACAAACCGTCTTTGTCTGAAGATGGCATGGTCTA 416
Query 447 TATAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGATGGACTCGATTCCGAAGA 506
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 417 TACAGAGCCTGTTGGTCCTGGTGTTCATACCCTATCTTCAGCTGGACTCGATTCCGAAGT 476
Query 507 TGGACGCAGGGACTTACATCTGAAAAACTCTTTTGGTGAGATGATTAACAGAGAACGACT 566
||||| ||||||||||| ||||||| || |||| |||| |||||||||||||| ||
Sbjct 477 TGGACACAGGGACTTACGTCTGAAACGCTATTTTTCTGAGCGGATTAACAGAGAACTACC 536
Query 567 ACCACCAATAA-GGGAGCTTGCT-AGGA--TTATGTATGATCCAGTCAGA-GCTTACGAA 621
| |||||| ||| ||||||| |||| ||||||||||| ||||| || ||| | ||
Sbjct 537 AGAACCAATCTCGGG-GCTTGCTGAGGAGGTTATGTATGATACAGTC-GAAGCT-AT-AA 592
Query 622 A-G-AGTCCCACTGATG-TCTATTTTTGTCGTCGACA-TGAGGATTGGATCCGAACACTA 677
| | || |||||||| | ||||| ||||||||||||| | | |||| | |||||||||
Sbjct 593 ACGGAGACCCACTGA-GCTCTATCTTTGTCGTCGACACTTTG-ATTGAAAACGAACACTA 650
Query 678 TGGAACAAGAAGTACGACAGCATTGGTGGTGAAACGCACCAA-CGACGTGATGTTCTTTG 736
|||||||||| |||||||||||||||| |||| |||||||| | | |||| ||||||||
Sbjct 651 TGGAACAAGATGTACGACAGCATTGGTTGTGAGACGCACCATGCAA-GTGAGGTTCTTTG 709
Query 737 AGAGGTACAGGGAGAAATTTAATGATAACTGGGAA-GAT-CACGACTTCGCG-TTCACCA 793
|||||||||||| || |||||||||| ||||| || | | ||||||||| || |||||||
Sbjct 710 AGAGGTACAGGGCGAGATTTAATGATGACTGG-AACG-TGCACGACTTC-CGGTTCACCA 766
Query 794 TC 795
||
Sbjct 767 TC 768
Score = 108 bits (58), Expect = 1e-22
Identities = 63/65 (97%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGGAGAGGGAGAAAACATACTGACGCTGCTGCAGAACAGAGAGAACTGGCAATCAAG 80
Query 61 G-CAA 64
| |||
Sbjct 81 GTCAA 85
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5