BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472311
Length=3417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protei... 2200 0.0
AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protei... 1929 0.0
AT2G05635.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D su... 148 3e-34
> AT1G20750.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7203302-7208998 REVERSE LENGTH=3435
Length=3435
Score = 2200 bits (1191), Expect = 0.0
Identities = 1452/1572 (92%), Gaps = 41/1572 (3%)
Strand=Plus/Plus
Query 812 CACA-TAATATGGAAGACATTGCTCGTGAAGCAGGAAGCATTAACATGGAAGAAGATATT 870
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 706 CACAGTAATATGGAAGACATTGCTCGTGAAGCAGGAAGCATTAACTTGGAAGAAGACATT 765
Query 871 CTTTTCAAATTGAAGAATGAACTAGAACAGGTGAGTGAGAATGAGCCAGAGATATATGAA 930
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 766 ATTTTCAAATTGAAGAATGAACTAGAACAGATGAGTGAGGTTGAGCCAGAGATATATGAT 825
Query 931 TCCTTGTAT-ATAGTAGTAGAGGGATTGATAAGCTGGATTGGGAGAAAAAAGGATTCACT 989
||||||||| | |||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 826 TCCTTGTATGA-AGTAGTAGAGGGATTGATAAGCTGGATTGGAAGAAAGAAGGATTCACT 884
Query 990 AGTAAAACGTGATTTTGAGCACTATTTCTCTAATTGGACTGGAGACAGAGCTTTAAAAGA 1049
| |||||||||| |||| |||||||||||||| ||||||||||| |||||||| |||||
Sbjct 885 CGCAAAACGTGATGTTGACCACTATTTCTCTAACTGGACTGGAGATAGAGCTTTGAAAGA 944
Query 1050 GTTAAAGGAATTCAATATCACTCCTGAAAACTTCCCAAACTTAGAGGCATGTTTTAACCA 1109
| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 945 GCTAAAGGAATTCAATATCACTCGAGAAAACTTCCCAAACTTAAAGGCATGTTTTAACCA 1004
Query 1110 AGCGATCACAAAATCAGAGGCATCAGAAATGGACCCGGATAAGCCTTATTTGAGTGGGAT 1169
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1005 AGCGATCACAAAATCAGAAGCAGCAGAAATTGACCCGGATAAGCCTTATTTGAGTGGGAT 1064
Query 1170 ATCTGTCTCCACACTAGAAGAGTTGTTTGCTACACTTACATACTTCTTTTCAAGAAATGG 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATCTGTCTCCACACTAGAAGAGTTGTTTGCTACACTTACATACTTCTTTTCAAGAAATGG 1124
Query 1230 AAGTCACGTCCTAGATTATGAAATGGGTTTACAACGGTCTGCTAAGAGAGGTACAAGAGA 1289
|||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1125 AAGTCACGTCCTAGATTATGAAATGGGTTTACAACGTTCTGCTAAGAGAGG-A---GA-- 1178
Query 1290 TAATGGGTGGACGCATACTTTCAGTTTGTGGTGCATGAATCCGTCTGTTGTTTTCAAAGA 1349
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1179 TAATGGGTGGACGAATACTTTCAGTTTATGGTGCATGAATCCGTCTGTTGTTTTCAAAGA 1238
Query 1350 CTTAGCTGATCTTTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTC 1409
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 CTTAGCTGATCTGTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTC 1298
Query 1410 TTTCTCATCTGAACTTGGGATGCAATTTGGCACTTGTTTAGAGGCTCCACATGTGATTGA 1469
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1299 TTTCTCATCTGAACTTGGGATGCAGTTTGGTACTTGTTTAGAGGCTCCACATGTGATTGA 1358
Query 1470 TCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCAGTGGTCCTGGTAATTTTCCTCTAAA 1529
||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||
Sbjct 1359 TCCTAATATGCAGGTGTGGGCTGGTGCAATCTCCACTGTTCCTGGTAACTATCCTCTAAA 1418
Query 1530 TGCAAGTTATAAAACAGCTGATGCATATGCATTCCAGGATGCTCTAGGGAAATCGTTGGA 1589
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1419 CGCAAGTTATAGAACAGCTGAGGCATATGCATTCCAGGACGCTCTAGGGAAATCATTGGA 1478
Query 1590 AGAGATTTGCAGTATTGTACCAGGAGGCTCTCTGGTATTCTTTCCAAGCTATAAGTTGAT 1649
||| || |||| |||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1479 AGAAATCTGCACTATTGTACCAGGTGGCTCTCTTGTATTCTTTCCAAGCTATAAGTTGAT 1538
Query 1650 GGAAAAACTCTGCACGCGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGAAAAG 1709
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1539 GGAAAAACTTTGCACACGTTGGCATGAAACTGGACAATGGTCTCGGCTCTGCTTGAAAAC 1598
Query 1710 GGACTTTTTTATCGAACCAAGAGGAGGAGCCAAGGACGATTTCGAAACTGTTCTGAAGGA 1769
||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1599 AGACCTTTTTATCGAACCAAGAGGAGGATCCAAGGACGATTTCGAAACTGTTCTCAAGGA 1658
Query 1770 ATATTATGATTCGATAAGCGGAAATAACAGATCGAATGGAAGAAATAGCAGAGTTAAGAA 1829
||| |||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||
Sbjct 1659 ATACTATGATTCGATAAGCGGAAAGAACAGATTGATTGGAAGAAATAGCAGCGTTAAGAA 1718
Query 1830 AGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCTAAGAGAGGATCTGCATTTCTTGC 1889
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1719 AGCAGGGTCTGTTATAACTGAGGCTCAAGATGATTCCAAGAGAGGATCTGCATTTCTTGC 1778
Query 1890 AGTATGTAGAGGAAAGGTTTCAGAAGGGCTTGATTTTTCTGATGACAATGCCAGGGCAGT 1949
|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 1779 AGTATGTAGAGGAAAGGTTTCAGAAGGGATGGATTTTTCTGATGACAACGCCAGGGCAGT 1838
Query 1950 GATAATTGTTGGCATTCCATTTCCAAACTTGGGCGATATTCTAGTCGAACTAAAGAGGAA 2009
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||
Sbjct 1839 GATAATTGTTGGCATTCCACTTCCAAACTTGGGCGATATTCTAGTCGAGCTAAAGAGAAA 1898
Query 2010 ATATAATGATACCAACAAATCATCTAAAAAACTTCTTGGAGGGAGTGAGTGGTATTGCCA 2069
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1899 ATATAATGATACCAACAAATCATCTAAAAACCTTCTTGGAGGGAGTGAGTGGTATTGCCA 1958
Query 2070 ACAGGCGTACCGTGCTTTAAATCAAGCAGCAGGGCGATGTATCCGGCATAGGTTTGATTA 2129
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1959 ACAGGCGTATCGTGCTTTAAATCAAGCAGCAGGACGATGTATCCGTCATAGGTTTGATTA 2018
Query 2130 TGGTGCCATCATATTCTTGGTTATGATAGATTTGAGGCTGTCTTGTTTTGGTGTCCCAGA 2189
|||||||||||||||||| ||||| | | | || || || | ||| | || ||
Sbjct 2019 TGGTGCCATCATATTCTTAGTTAT--T-G-T---AG-CT--CT-GA---GGT-TACC-GA 2062
Query 2190 TGAGCGATACCGACAACCAAGGAACAGAGCTTCTATTTCAAAGTGGCTAAGGCAGTCTAT 2249
| | ||| | | |||||||||| ||||||||||||||||||||||| |||||
Sbjct 2063 ----C-A-ACC-A-A-----GGAACAGAGCGTCTATTTCAAAGTGGCTAAGGCA-TCTAT 2108
Query 2250 CAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGATTAAGATATTTTTTCAACAGTGT 2309
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 2109 CAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGACTAAGATATTTTTTCAGCAGTGT 2168
Query 2310 CAAGGAGACAGTTGACAGTAAGATATTAGAGTCCCATGAGCAGAATTTGTTCC-CTAAAA 2368
|||||||| ||||||||| ||||| |||||||| ||||||||||| |||| || || |||
Sbjct 2169 CAAGGAGAGAGTTGACAGCAAGATGTTAGAGTCTCATGAGCAGAACTTGT-CCTCTGAAA 2227
Query 2369 ACCAAAGCAATG 2380
||||||| ||||
Sbjct 2228 ACCAAAGAAATG 2239
Score = 1184 bits (641), Expect = 0.0
Identities = 767/827 (93%), Gaps = 12/827 (1%)
Strand=Plus/Plus
Query 2403 TGGTATTTCAGCAGCCAGTCCATGTTCTAGCTCAAAGAATGAAAGCTCTAGCCTAGAAAC 2462
||||||| || ||||||| |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2466 TGGTATTGCAACAGCCAGACCATGTTCTAGCTCGAAGTATGAAAGCTCTAGCCTAGAAAC 2525
Query 2463 AGGTCTGAGATCTCTGAGGTCTCCTGATCAATTCTTAAAACGGCATGTATCTACTTCAAA 2522
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 2526 AGGTCTGAGATCTCTGAAGTCTCCTGATCAATTCTTAAAACGGCATGTATCTAATGCAAA 2585
Query 2523 CTTCGGAAGACCTCCTCTTGGTGCTGAGTCGTCTGTAATAGTAACTCCGGAGAGATATTC 2582
||| ||||| |||||||||| ||||| ||||| | |||||||| |||||||||||
Sbjct 2586 TTTCAGAAGATCTCCTCTTGGAGCTGAATCGTC-----T-GTAACTCCTGAGAGATATTC 2639
Query 2583 CATTGGTGATACCCGTAGT-TCGATTCTAGAAGCAGAGTCACCGTTGAACATGAGTGTTA 2641
||||||||||| |||| | | || |||||||||||||||||| ||||||||||||||||
Sbjct 2640 CATTGGTGATATGCGTAATAT-GACTCTAGAAGCAGAGTCACCTTTGAACATGAGTGTTA 2698
Query 2642 ATTCCCATGCTTTGAAGAGAAGAAAGTTTACTACCTCTCCAATCATCATTGACCTTGAAG 2701
|||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2699 ATTCACATGTTTTGAAGAGAAGAAAGTTTACTACATCTCCAATCATCATTGACCTTGAAG 2758
Query 2702 AAGAAAACAGTAACT-CTCCTGATACTAGACCCGAGGATCACACGCGTTTCACAAGAAGA 2760
||||||||||||| | ||||||| | ||||||||||||||||||| ||||||| ||||||
Sbjct 2759 AAGAAAACAGTAA-TGCTCCTGACAATAGACCCGAGGATCACACGAGTTTCACTAGAAGA 2817
Query 2761 ATTGAATTTGGGTTTCCGGAAGTGGATCAGAGAGTGATGAGGATATCTTGTTCACTCTGC 2820
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2818 ATTGAATTTGGGTTTCCAGAAGTGGATCAGAGAGTGATGAGGATATCATGTTCACTCTGC 2877
Query 2821 AGAAGTTCATTAGGTCACCCTGAGAACCACTCATATCCCAAATGCTTGTTGACTTCGTCG 2880
|||||| ||||| |||||||||||||| |||||||||||| |||| ||||||||||||||
Sbjct 2878 AGAAGTACATTAAGTCACCCTGAGAACAACTCATATCCCATATGCATGTTGACTTCGTCG 2937
Query 2881 TCCAAAATGTATTTGCTGTCTCTTCTGAAAGAAACATCAGGAATTGGTTCTGCAGAAATG 2940
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2938 TCCAAAACCTATTTGCTGTCTCTTCTGAAAGAAACATCAGGAACAGGTTCTGCAGAAATG 2997
Query 2941 CCAACAAGTGTTTCAGTTATCATGACAGATTGCTCATTGGTTAATCAGAGACTCTGCAGA 3000
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2998 CCAACAAGTGTTTCAGTTATCATGACAGATTGCTCATTGGTTAATCAGAGACTCTGCACA 3057
Query 3001 AGTTCTGAAATCTCAAAAGGTCAGGGTATTTGGT-CCGAACAAGATGGATGTGTTTTCAA 3059
| |||||||| |||||| |||||||||||||||| || | ||||||||||||||||||||
Sbjct 3058 AATTCTGAAAGCTCAAATGGTCAGGGTATTTGGTGCC-AGCAAGATGGATGTGTTTTCAA 3116
Query 3060 AACTATCTTTTGCCCTTTCTGTAGTGTCCCAAACACCTGCCTTGGAGTGCAAGTCATGGC 3119
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 3117 AACTATCTTCTGCCCTTTCTGTAGTGTCCCAAACACCTGCCTTGGAATGCAAGTCATGGC 3176
Query 3120 TACTGATTCATCAAACGCCCAGTTTATGAGCAAAATTTTATTCTTTGCTGATCATCTAGA 3179
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3177 TACTGATTCATCAAACGTCCAGTTTATGAGCAAAATTTTGTTCTTTGCTGATCATCTAGA 3236
Query 3180 AGTCACGAATGATGCTGCAAGCAAGCAAACAACGTTAACGCACAAGT 3226
||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3237 AGTCACGAATGATGCTGCAAGCAAGGAAACAAGGTTAACGCACAAGT 3283
Score = 1044 bits (565), Expect = 0.0
Identities = 646/686 (94%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCCGCAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
|||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCACAAGAAGTAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 61 AAAAACCCTAAAAACGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 AAAAACCCTAAGAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTACCAACCC 120
Query 121 TATGGAACCCAGCTTGCTTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGCGA 180
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TACGGAACACAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGAGA 180
Query 181 GATGGTCACTCCCACGCTTTGCTCGAGTCTCCCACTGGAACAGGCAAATCTCTGTCTTTG 240
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 GATGGTCACTCCCACGCATTGCTCGAGTCTCCCACGGGTACAGGCAAATCTCTGTCTTTG 240
Query 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTATAAATCGCGGTTTCCGAATGGAAATTTG 300
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTACAAATCTCGGTTTCCTAATGGAAATTTG 300
Query 301 ACTCATTCGAGAACGCATCCCTCAGATAATGCTGCATCTTGTAATGTTGAGCCACCTGAA 360
||||||||| |||||| |||||||||| ||||| |||| ||||||| ||||||| ||||
Sbjct 301 TCTCATTCGAAAACGCAGCCCTCAGATATTGCTGGATCTAGTAATGTGGAGCCACATGAA 360
Query 361 CCTGCA-ATTCCTACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCAT 419
||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCT-CAGATTCCCACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCAT 419
Query 420 TCGTGAGTATCGGAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACG 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCGTGAGTATCGAAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACG 479
Query 480 TTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGTTGACGAAAAGTGTCGGTTGCT 539
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 480 TTACTGCACCAATAGTCATGTACAGGGGAAAGAGAATGTAGACGAAAAATGTCGGTTGCT 539
Query 540 CCTAAAAGATAAGAAAAACATAAAATGTGCTGAGTTCAAAGGCGTCGGTCAGATCTTAGC 599
|||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct 540 CCTAAAAGATAAGAAAAACATAAAATGTGCCGAGTTCAATGGCGTCGGTCGGATCTTAGC 599
Query 600 TTACCCATCACTTCAGCAAAACGGTCACAATGGGGTTCATGATATTGAAGATCTTGTAAA 659
|||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||
Sbjct 600 TTACCCATCACTTCAGCAGACCGGTCACAATGGGGTTCATGATATTGAAGACCTTGTAAA 659
Query 660 AATTGGAAAAACTGTTACAGGCTGTC 685
|||||||||||||||||||||| |||
Sbjct 660 AATTGGAAAAACTGTTACAGGCCGTC 685
> AT1G20720.1 | Symbols: | RAD3-like DNA-binding helicase protein
| chr1:7185658-7192794 REVERSE LENGTH=3528
Length=3528
Score = 1929 bits (1044), Expect = 0.0
Identities = 1567/1814 (86%), Gaps = 58/1814 (3%)
Strand=Plus/Plus
Query 366 AATTCCTACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCATTCGTGA 425
|||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 441 AATTCCTACCATATACTATGCTTCACGAACTCATTCTCAGATTACTCAAGTGATTCGTGA 500
Query 426 GTATCGGAAAACCGGTTACAGAGTTCCCATGACTGTATTGGGTTCAAGGAAACGTTACTG 485
|||| ||||||| ||||||||||| |||||| ||||||||| |||||| |||| ||||||
Sbjct 501 GTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTGGCTTCAAGAAAACATTACTG 560
Query 486 CACCAATAGTCATGTACAGGGGAAAGAGAATGTTGACGA-AAAGTGTCGGTTGCTCCTAA 544
||| ||| ||||||||| |||||||| ||||| || || || |||||||| ||| |||
Sbjct 561 CACGAATCGTCATGTACTTGGGAAAGACAATGTAGATGATGAA-TGTCGGTTACTCTTAA 619
Query 545 AAGATAAGAAAAACATAAAATGTGCTGAGTTCAAAG-GCGTCGGTCAGATCTTAGCTTAC 603
|||||||| ||||||| ||||| |||| ||| ||| |||| | | ||| | || |
Sbjct 620 AAGATAAGGCAAACATACAATGTTCTGAATTC-AAGAACGTCAATAAAATCACATCTCAT 678
Query 604 CCATCACTTCAG-CAAAACGGTCACAATGGGGTTCATGATATTGAAGATCTTGTAAAAAT 662
|||||||||||| | | | |||||||||| |||||||||||||||||||||||||||| |
Sbjct 679 CCATCACTTCAGCCCAGA-GGTCACAATGAGGTTCATGATATTGAAGATCTTGTAAAAGT 737
Query 663 TGGAAAAACTGTTACAGGCTGTCCATATTTTGCTTCCTGGAAAAT-GTTGGAGGTTGCAC 721
|||||||| ||||| |||||| |||||||||||||||||| ||| | | ||| ||||
Sbjct 738 TGGAAAAAATGTTAGAGGCTGCCCATATTTTGCTTCCTGGTCAATGGCT-GAGAACGCAC 796
Query 722 AATTGGTTTTTTGCCCTTATTCCTATATAATTGATCCTGTCATTC--G-AGGCG--G-AG 775
||||||| ||||||||||||||||||||| || |||||||||||| | ||| | | ||
Sbjct 797 AATTGGTGTTTTGCCCTTATTCCTATATAGTTAATCCTGTCATTCGAGCAGGAGTTGAAG 856
Query 776 TAAATCT-ACAAGGAGCGATTATAATTTTTGATGAAGCACATAATATGGAAGACATTGCT 834
|| |||| | ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 857 TAGATCTGA-AAGGAGCGATTATCATTTTTGATGAAGCACACAATATGGAAGACATTGCT 915
Query 835 CGTGAAGCAGGAAGCATTAACATGGAAGAAGATATTCTTTTCAAATTGA-AGAATGAACT 893
||||||||||| |||||||| |||||||||| | |||||||||||| | ||||||||||
Sbjct 916 CGTGAAGCAGGTAGCATTAATTTGGAAGAAGACACTCTTTTCAAATT-ACAGAATGAACT 974
Query 894 AGAACAGGTGAGTGAGAATG-AGCCAGA-GATATATGAATCCTTGTAT-ATAGTAGTAGA 950
||||||| |||| | | | ||||| | ||| ||| || |||||| | | |||||||||
Sbjct 975 AGAACAGATGAGCGTG-GCGCAGCCA-ATGATTTATCAACCCTTGTGTGA-AGTAGTAGA 1031
Query 951 GGGATTGATAAGCTGGATTGGGAGAAAAAAGGATTCACTAGTAAAACGTGATTTTGAGCA 1010
|||| |||||||||||||||| ||||||||||| ||| ||| ||||||||||||| ||||
Sbjct 1032 GGGACTGATAAGCTGGATTGGAAGAAAAAAGGACTCATTAGCAAAACGTGATTTTCAGCA 1091
Query 1011 CTATTTCTCTAATTGGACTGGAGACAGAGCTTTAAAAGAG-TTAAAGGAATTC-AATATC 1068
|||||||||| ||||||||||||| |||||||| |||| || ||||| || ||||||
Sbjct 1092 TTATTTCTCTAGCTGGACTGGAGACAAAGCTTTAAGAGAGCTT-GAGGAA-TCTAATATC 1149
Query 1069 ACTCCTGAAAACTTCCCAAACTTAGAGGCATGTTTTAACCAA-GCGATCACAAAATCAGA 1127
|||| |||| |||||| | |||| || ||| ||| || || || |||| || |||| |
Sbjct 1150 ACTCGTGAATGCTTCCCGATCTTATTGGAATGCTTT-ACAAAGGCTATCAGAACATCAAA 1208
Query 1128 GGCA-TCAGAAATGGACCCGGATAAGCCTTATTTGAGTGGGATATCTGTCTCCACACTAG 1186
|| | |||||||||| | |||| || ||||||||| ||||||||||||| |||||||
Sbjct 1209 GG-AGGCAGAAATGGAATCAGATATGCTTTATTTGAGCGGGATATCTGTCTTGACACTAG 1267
Query 1187 AAGAGTTGTT-TGCTACACTTACATACTTCTTTTCAAGAAATGGAAGTCACGTCCTAGAT 1245
|||||||||| | || |||| || ||||||||||||||||||||||||||| || |||||
Sbjct 1268 AAGAGTTGTTCT-CTTCACTAACGTACTTCTTTTCAAGAAATGGAAGTCACATCTTAGAT 1326
Query 1246 TATGAAATGGGTTTACAACGGTCTGCTAAGAGAGGTACAAGA-GATAATGG---GTGGAC 1301
|| || ||||||| ||||| ||| |||| ||||| ||| | ||| |||||
Sbjct 1327 TACCAACTGGGTTTGCAACGTTCTACTAAAAGAGG----AGATCCTTCTGGTACCTGGAC 1382
Query 1302 GCATACTTTCAGTTTGTGGTGCATGAATCCGT-CTGTTGTTTTCAAAGACTTAGCTGATC 1360
|||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1383 GCATACTTTCAGCTTGTGGTGCATGAATCC-TGCTGTTGTTTTCAAAGACTTAGCTGATA 1441
Query 1361 TTTCTTTATCCATCATTTTAACATCTGGGACTTTGTCACCGATGAATTCTTTCTCATCTG 1420
| || |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1442 TATCATTATCCGTCATTTTAACATCTGGGACTTTGTCACCAATGAATTCTTTCTCATCTG 1501
Query 1421 AACTTGGGATGCAATTTGGCACTTGTTTAGAGGCTCCACATGTGATTGATCCTAATATGC 1480
||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1502 AACTTGGGATGCAGTTTGGCACTTCTTTAGAGGCTCCACATGTTATTGATCCTAATATGC 1561
Query 1481 AGGTGTGGGCTGGTGCAATCTCCAGTGGTCCTGGTAATTTTCCTCTAAATGCAAGTTATA 1540
|||||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 1562 AGGTGTGGGCGGGTGCAATCTCCAATGGTCCTAGTAATTATCCTCTAAATGCAAGTTATA 1621
Query 1541 AAACAGCTGATGCATATGCATTCCAGGATGCTCTAGGGAAATCGTTGGAAGAGATTTGCA 1600
||||||||||||||||| |||||||||||||||| |||||||| |||||||| || ||||
Sbjct 1622 AAACAGCTGATGCATATTCATTCCAGGATGCTCTGGGGAAATCATTGGAAGAAATCTGCA 1681
Query 1601 GTATTGTACCAGGAGGCTCTCTGGTATTCTTTCCAAGCTATAAGTTGATGGAAAAACTCT 1660
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1682 CTATTGTACCAGGTGGCTCTCTTGTATTCTTTCCAAGCTATAAGTTGATGGAAAAACTCT 1741
Query 1661 GCACGCGTTGGCATGAAACTGGA-CAATGGTCTCGGCTCTGCTTGAAAAGGGACTTTTTT 1719
||| |||||||| ||||||| || || |||||||||||||||||||||| |||| |||||
Sbjct 1742 GCATGCGTTGGCGTGAAACT-GAGCAGTGGTCTCGGCTCTGCTTGAAAAAGGACCTTTTT 1800
Query 1720 ATCGAACCAAGAGGAGGAGCCAAGGACG-ATTTCGAAACTGTTCTGAAGGAATATTATGA 1778
| |||||||||||||| ||| |||||| |||| || |||||||||||| |||||||||
Sbjct 1801 GTTGAACCAAGAGGAGGCGCCCAGGACGAATTT-GATTCTGTTCTGAAGGGATATTATGA 1859
Query 1779 TTCGATAAGC-GG-A-AATAACAGATCGAA-TGGAAGAAATAGCAGAGTTAAGAAAGCAG 1834
||| ||| || || | ||||| | || || |||||||||||| |||| |||||||||||
Sbjct 1860 TTCTATACGCGGGAAGAATAA-A-AT--AATTGGAAGAAATAGAAGAGCTAAGAAAGCAG 1915
Query 1835 GGTCTGTTATAACTGAGGCTCAAGATGATTCTAAG-AGAGGATCTGCATTTCTTGCAGTA 1893
|| || ||| ||||||| ||||||||||||| ||| || ||| ||||||||||||||||
Sbjct 1916 GGCCTATTAAAACTGAGACTCAAGATGATTCCAAGAAG-GGAGCTGCATTTCTTGCAGTG 1974
Query 1894 TGTAGAGGAAAGGTTTCAGAAGGGCTTGATTTTTCTGATGACAATGCCAGGGCAGTGATA 1953
|||||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||
Sbjct 1975 TGTAGAGGAAAGGTTTCAGAAGGGATTGACTTTGCTGATGACAACGCCAGGGCAGTGATA 2034
Query 1954 ATTGTTGGCATTCCATTTCCAAACTTGGGCGATATTCTAGTCGAACTAAAGAGGAAATAT 2013
|||||||||||||||||||||||||| ||||||| ||||| ||| |||| ||||||
Sbjct 2035 ATTGTTGGCATTCCATTTCCAAACTTACATGATATTCAAGTCGGACTGAAGAAAAAATAT 2094
Query 2014 AATGATACCAACAAATCATCTAAAAAACTTCTTGGAGGGAGTGAGTGGTATTGCCAACAG 2073
||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 2095 AATGATACCTACAAGTCATCTAAAAGTCTTCTTGGAGGGAGTGAATGGTATTGCCAACAG 2154
Query 2074 GCGTACCGTGCTTTAAATCAAGCAGCAGGGCGATGTATCCGGCATAGGTTTGATTATGGT 2133
|| || ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2155 GCCTATCGTGCGCTAAATCAAGCTGCAGGACGATGTATCCGGCATAGGTTTGATTATGGT 2214
Query 2134 GCCATCATATTCTT 2147
||||||||||||||
Sbjct 2215 GCCATCATATTCTT 2228
Score = 446 bits (241), Expect = 8e-124
Identities = 287/310 (93%), Gaps = 0/310 (0%)
Strand=Plus/Plus
Query 1 ATGGCTCCCGCAACCAGCAAATCGGATTCGAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
|||| | || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTCCTCAACCAGCAAATCGGATTCAAAGGAAGAAGTGAAACAAACCCTAAACTCC 60
Query 61 AAAAACCCTAAAAACGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAAACCCTAAAAATGTCTACCAAATCGGAGGCCTTCAAGTTGAATTCCCTTATCAACCG 120
Query 121 TATGGAACCCAGCTTGCTTTCATGAGCCGGGTCATATCTACGCTTGATCGTGCCCAGCGA 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 121 TATGGAACCCAGCTTGCGTTCATGAGCCGGGTCATATCTACGCTCGATCGTGCCCAGAGA 180
Query 181 GATGGTCACTCCCACGCTTTGCTCGAGTCTCCCACTGGAACAGGCAAATCTCTGTCTTTG 240
|| ||||||| |||||| |||||||||||||||||||| || |||||||||||||| |||
Sbjct 181 GACGGTCACTGCCACGCGTTGCTCGAGTCTCCCACTGGCACGGGCAAATCTCTGTCATTG 240
Query 241 CTCTGCTCCGTTCTCGCTTGGCAAAAGAGCTATAAATCGCGGTTTCCGAATGGAAATTTG 300
|||||||| ||||||||||||||| ||| ||||||||| ||| ||| || |||||||||
Sbjct 241 CTCTGCTCAGTTCTCGCTTGGCAACAGAACTATAAATCCCGGCTTCTAAAAGGAAATTTG 300
Query 301 ACTCATTCGA 310
|||||||||
Sbjct 301 TCTCATTCGA 310
Score = 326 bits (176), Expect = 1e-87
Identities = 231/258 (90%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 2969 ATTGCTCATTGGTTAATCAGAGACTCTGCAG-AAGTTCTGAAATCTCAAAAGGTCAGGGT 3027
|||||||| |||||||||||||||||||||| || || |||| || |||||||||||||
Sbjct 3104 ATTGCTCAATGGTTAATCAGAGACTCTGCAGAAAATT-TGAAGGCTTAAAAGGTCAGGGT 3162
Query 3028 ATTTGGTCCGAACAAGATGGATGTGTTTTCAAAACTATCTTTTGCCCTTTCTGTAGTGTC 3087
||||||| ||| |||||||||||||||||||| ||||||| |||||||||||| || ||
Sbjct 3163 ATTTGGTGCGAGCAAGATGGATGTGTTTTCAATACTATCTATTGCCCTTTCTGCAGCATC 3222
Query 3088 CCAAACACCTGCCTTGGAGTGCAAGTCATGGCTACTGATTCATCAAACGCCCAGTTTATG 3147
|||||||| || || |||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 3223 CCAAACACATGTCTCGGAGTGCAAGTCATGGCTACTGATTCATCAAATGTCCAGTTTTTG 3282
Query 3148 AGCAAAATTTTATTCTTTGCTGATCATCTAGAAGTCACGAATGATGCTGCAAGCAAGCAA 3207
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 3283 AGCAAAATTTTGTTCTTTGCTGATCATCTAGAAGTCACCAATGAAGCTGCAAGCAAGGAT 3342
Query 3208 ACAACGTTAACGCACAAG 3225
||||||||| |||||||
Sbjct 3343 TCAACGTTAAAGCACAAG 3360
Score = 219 bits (118), Expect = 2e-55
Identities = 149/164 (91%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 2187 AGATGAGCGATACCGACAACCAAGGAACAGAGCTTCTATTTCAAAGTGGCTAAGGCAGTC 2246
||||||||||||| | ||| |||||||||||| ||||||||||| ||||||||||||||
Sbjct 2229 AGATGAGCGATACAAAGAACAAAGGAACAGAGCGTCTATTTCAAAATGGCTAAGGCAGTC 2288
Query 2247 TATCAAAGTGTATGATAATTTTGAAGCTTCTATGGAAGGATTAAGATATTTTTTCAACAG 2306
||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||
Sbjct 2289 TATCAAAGTGTATGATAATTTTGAAGCATCTATGGAAGGCTTGAGATCTTTTTTCAACAG 2348
Query 2307 TGTCAAGGAGACA-GTTGACAGTAAGATATTAGAGTCCCATGAG 2349
|||||||||| || |||||||||||||| |||| |||||| |||
Sbjct 2349 TGTCAAGGAG-CAAGTTGACAGTAAGATGTTAGGGTCCCAGGAG 2391
> AT2G05635.1 | Symbols: | DNA repair DEAD helicase RAD3/XP-D
subfamily protein | chr2:2089484-2090454 FORWARD LENGTH=441
Length=441
Score = 148 bits (80), Expect = 3e-34
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 366 AATTCCTACCATATACTATGCTTCACGAACTCATGCTCAGATCACTCAAGTCATTCGTGA 425
|||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct 279 AATTCCTACCATATACTATGCTTCACGAACTCATTCTCAGATTACTCAAGTGATTCGTGA 338
Query 426 GTATCGGAAAACCGGTTACAGAGTTCCCATGACTGTATTGG 466
|||| ||||||| ||||||||||| |||||| |||||||||
Sbjct 339 GTATAGGAAAACTGGTTACAGAGTCCCCATGGCTGTATTGG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170065936770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5