BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472313
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20770.1 | Symbols: | unknown protein; Has 59 Blast hits to... 1142 0.0
> AT1G20770.1 | Symbols: | unknown protein; Has 59 Blast hits
to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa
- 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:7215015-7216741 REVERSE
LENGTH=1071
Length=1071
Score = 1142 bits (618), Expect = 0.0
Identities = 725/777 (93%), Gaps = 6/777 (1%)
Strand=Plus/Plus
Query 3 CTCGTGTAAGCTTTGAATTGTTGATTCTCGTGTGTTGGAGCTAAATTCCGATGGCGGAGA 62
||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 44 CTCGTGTAAGCTTCGATTTGTTGATTCGCGTGTGTTGGAGCTAAATTTCGATGGCGGAGA 103
Query 63 TTTACGAGGAAGGAGATGAATCCA-TGGATGTGAATAATGAAGCAGAAGTGAAAACTGAG 121
||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||||||
Sbjct 104 TTTACGAGGAAGGAGATGAAT-CAGTGGATGTGAATAAAGAATCAGAAGTGAAAACTGAG 162
Query 122 CTGGGAAAAGAGGGAGGAGATGAGAATGTTTTGCAGTTTCTAGATTCGTTGGATGGCTAT 181
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 163 CTGGGAAAAGGGGGAGGAGATGAGAATGTTTTGCAGTTTCTAGATTCGTTGGATGGATAT 222
Query 182 TTAACTCTTATGGATTCTCTGAATTCTAAGCTTCGAGAGGGATGGTTTGATCTAGCTAGT 241
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TTAACGCTTATGGATTCTGTGAATTCTAAGCTTCGAGAGGGATGGTTTGATCTAGCTAGT 282
Query 242 GCTCGGCATTCTATGGGAACTTTACGTATTAATAGCACTCTCTTAGACCTTAAGTATCAT 301
||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||||
Sbjct 283 GCTCGACATTCTATGGGAACTTTACGCATCAACAGCACTCTCTTAGATCTTAAGTATCAT 342
Query 302 CCCGCTGCTTCAACATTGCAAGTCACAGACCAAGATGTTGAATCTTTGGGATCAGTACCT 361
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 343 CCCGCTTCTTCAACATTGCAAGTGACTGACCAAGATGTTGAATCTTTGGGATCAGTACCT 402
Query 362 CATTTTGCTTTGTCCAAGTGGGCTTCCAAGGGCGGTAGC-GGAAAAGGCAAAGACTTGTC 420
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 403 CATTTTGCTTTGTCCAAGTGGGCTTCCAAGGGCGGTAGCAGGAAA-GGCAAAGACTTCTC 461
Query 421 TACTGATACAGATTCGGAGATAGGCTCACCTCTCAGCCCACAGCTACGGCATCGAGGATT 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 462 TACTGATACAGATTCGGAGATAGGCTCACCTCTCAGCCCACAGCTACGACATCGAGGAGT 521
Query 481 TTCTGAAGAGAAACCATCAGCCAAGGATGAAACCATTTTAGCAGCTGATGAAGAGATTAA 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 522 TTCTGAAGAGAAACCATCAGCCAAGGATGAAACCGTTTTAGCAGCTGATGAAGAGATAAA 581
Query 541 GAAAGAAAGAGCGAAATCTCTGTCGGTATTTGGAGG-CTTAGTCTCGCCTAAGCTACGCG 599
||||||| | || ||||||||||| ||||||||||| || |||||| |||||||| || |
Sbjct 582 GAAAGAACGGGCAAAATCTCTGTCAGTATTTGGAGGTCT-AGTCTCTCCTAAGCTGCGTG 640
Query 600 GCGCTCAACTTTCATTTGAGACAGCTCTTGAAACTCTTGTGGAAATAGCCAACATGCGTG 659
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 641 GCGCTCAACAATCATTTGAAACAGCTCTTGAAACTCTGGTGGAAATAGCCAACATGCGTG 700
Query 660 CATCGATGCTATCTGCCTTTGAGCGGCTCACAGAGAAGTGAAGTTCCTAAGTTACGACTG 719
|||||||| ||||||||||||||||| ||||||||||||||||||||| || || ||||
Sbjct 701 CATCGATGATATCTGCCTTTGAGCGGATCACAGAGAAGTGAAGTTCCTTGGTAACAACTG 760
Query 720 ACCCTGAAATGTGCTCAATGGATTCAGTGGAAGCAGAATGGAGCCAATCTCAAAGAC 776
| ||||||||||||||| |||||||| |||| |||||||||||||| |||||||||
Sbjct 761 ATCCTGAAATGTGCTCAGTGGATTCAACGGAAACAGAATGGAGCCAACCTCAAAGAC 817
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 828 ATCAAAATAATAAAACATTTTGGAGAAGA 856
|||||||||||||||||||||||||||||
Sbjct 1001 ATCAAAATAATAAAACATTTTGGAGAAGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5