BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472315

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G20800.1 | Symbols:  | F-box family protein | chr1:7228718-7...   664    0.0  


> AT1G20800.1 | Symbols:  | F-box family protein | chr1:7228718-7231600 
REVERSE LENGTH=1479
Length=1479

 Score =  664 bits (359),  Expect = 0.0
 Identities = 489/549 (89%), Gaps = 20/549 (4%)
 Strand=Plus/Plus

Query  1    ATGGATAGATTACCTTTTCACATCCTTGAAGAGATTCTCTTCAGATTGGATCCCAAATCT  60
            |||||| ||||||||||||| |||||||||||||||||||||| ||| ||||| ||||||
Sbjct  1    ATGGATGGATTACCTTTTCATATCCTTGAAGAGATTCTCTTCAAATTAGATCCAAAATCT  60

Query  61   CTGGCTATGATGCAATGCACGGATCGATCTATCAACTCGCATATAACCGACGATCCGCT-  119
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||  | 
Sbjct  61   CTGGCAATGATGCAATGCACGGATCGATCTATCAACTCGCATATATCCGACGATCCT-TA  119

Query  120  TTTCAAATCTGTATATAAGAAGGACCATTACGACGAGGGAGTGGTTCATGGGTACGACTT  179
            ||||||| |||||| ||||||||||  | ||||||| |||||| ||||||| ||||||||
Sbjct  120  TTTCAAAACTGTATGTAAGAAGGACTGTAACGACGACGGAGTGATTCATGGATACGACTT  179

Query  180  GAAAGCTAACAAGTGGGGAGTCATGGATTGGATTCCACGGTGGTGCGATGGTAAACGAGA  239
             ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  180  TAAAGCTACCAAGTGGGGAGTCATGGGTTGGATTCCACGGTGGTACGATGGTAAACGAGA  239

Query  240  CTTTTATCAGTCCAAACCGTCTTTGAC---ATCTTCTTCGATGGAACTAGATGAGAATGT  296
            | ||| |||||||||||||||||||||   ||| ||||||||||||||||||||||| | 
Sbjct  240  CCTTTGTCAGTCCAAACCGTCTTTGACGGCATCCTCTTCGATGGAACTAGATGAGAAGGA  299

Query  297  GGACGTCGACATGAT-----T----AATCATGATGATGAT-A--A-A--CGAATCTCCTC  341
            |||||||||||||||     |    ||| ||||||||||| |  | |  ||  |||||||
Sbjct  300  GGACGTCGACATGATGACGATGGTTAATGATGATGATGATGATGATAAACGTGTCTCCTC  359

Query  342  TCTAAGCAAAATTACGAGACTTATTAGCGGGATCTCACCATATGCTCAGAGCCTGTTCAA  401
            |||||||||| ||| |||||| ||||| || ||||||||||||||||||||| |||||||
Sbjct  360  TCTAAGCAAAGTTATGAGACTGATTAGTGGAATCTCACCATATGCTCAGAGCTTGTTCAA  419

Query  402  GAAAAAGGGAAAGCTACTTGgaaaaagattgatgattgaagaagaaacgaaattgaagat  461
            ||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct  420  GAAAAAGGGAAAGATACTTGGAAAAAGATTGATGATTGAAGAAGAAACGGAATCGAATAT  479

Query  462  gatgattgatgaGCCTAATTCTTCCAAGTTCCTAGACGTGGAGAGAATCAACAAAAGAAG  521
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  GATGATGGATGAGCCTAATTCTTCCAAGTTCCTAGACGTGGAGAGAATCAACAAAAGAAG  539

Query  522  AAGAGTCAA  530
            | |||||||
Sbjct  540  ACGAGTCAA  548



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5