BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472318
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20823.1 | Symbols: | RING/U-box superfamily protein | chr1... 1157 0.0
> AT1G20823.1 | Symbols: | RING/U-box superfamily protein | chr1:7238800-7239669
FORWARD LENGTH=870
Length=870
Score = 1157 bits (626), Expect = 0.0
Identities = 758/820 (92%), Gaps = 16/820 (2%)
Strand=Plus/Plus
Query 1 CTCTCAAACTCAAATCAATCTTCTTCCATTTTTCAAATTTTATacaca-acaacaacaac 59
|||||||||||||||||| |||||||||||||||||| ||| | ||| || ||||||||
Sbjct 1 CTCTCAAACTCAAATCAACCTTCTTCCATTTTTCAAA--TTACAAACATAC-ACAACAAC 57
Query 60 aacaaAACTTCTTACTCGCTAGAAATGGCTCGCCTTCTCTTCCGTCTTCTCGTAGAATCC 119
|||||||| |||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 58 AACAAAACCTCTTACTCACT-CCAATGGCTCGCCTTCTCTTTCGTCTTCTCGTAGAATCC 116
Query 120 AACACCCCGTCGCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCCGATCTCGTCGTC 179
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 117 AACACTCCGTCTCCGGCGATTGATAACTCCACCGCCGCGTTGAATTCTGATCTCGTCGTC 176
Query 180 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGTGTTCTCGGCTTGATCGCCGTTTCTCGA 239
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 177 ATCCTCGCTGCTCTCCTCTGCGCCTTGATTTGCGTTCTCGGCTTAATCGCCGTTTCTCGA 236
Query 240 TGCGTCTGGCTCCGTCGTTTTGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAGGTCAA 299
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 237 TGTGTCTGGCTCCGTCGTCTCGCAGCCGGAAACAGAACAGTCTCCGGATCTCAAACTCAA 296
Query 300 TCTCCTCCACCTCCAGTCGCAGCGGCGAACAAAGGCCTGAAGAAGAAGGTTCTCCAATCT 359
||||||| |||||| || ||||||||||||||||||||||||||||| || || ||||||
Sbjct 297 TCTCCTCAACCTCCGGTGGCAGCGGCGAACAAAGGCCTGAAGAAGAAAGTCCTTCAATCT 356
Query 360 CTCCCGAAACTTGCCTTCTCGCCGGAGTCACCGGAATCGGAGAAATTCGCCGAGTGTGCG 419
|||||||| ||| | |||||||| |||||||| || |||||||||||||| ||||| |||
Sbjct 357 CTCCCGAAGCTTACGTTCTCGCCAGAGTCACCTGAGTCGGAGAAATTCGCAGAGTGCGCG 416
Query 420 ATCTGTCTAGCTGAATTCTCCGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 ATCTGTCTAGCTGAATTCTCTGCCGGCGACGAGCTCCGAGTTTTACCGCAGTGTGGTCAC 476
Query 480 GGATTCCACGTGTCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGTCCTTCTTGC 539
|| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 477 GGGTTCCACGTGGCTTGCATTGACACGTGGCTAGGATCTCACTCGTCTTGCCCTTCTTGC 536
Query 540 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGCGGTTTACCCGGTAGCTCTAGC 599
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 537 CGTCAGATCTTGGTTGTTGCCAGGTGTCACAAGTGTGGAGGTTTACCCGGTAGCTCTAGC 596
Query 600 TCCGGACCCGAATCCGAACCCGAAATCGAGATCCGAATCAAACAAGGCGAAGATGATCCC 659
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 597 TCCGGACTTGAATCCGAACCCGAAATCGAGATCCGAATCAAGCAAGGCGAAGATGACCCC 656
Query 660 AACTCCTTCTTGCCTTGATCA-TTTACTTTCCCATTTATTTTATTAGAAAACTAGTATAA 718
|||||||||||||| | |||| |||| ||||||||||| ||||||||||||| | | |
Sbjct 657 AACTCCTTCTTGCCATAATCATTTTAGTTTCCCATTTA-TTTATTAGAAAAC---TCT-A 711
Query 719 TTTAATTTAATGCAGATCATCATTTTAGTGGGATAGTGTTTAGTCTCTTAATGTACATGG 778
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 712 --TAATTTAATGCAG---ATCATTTTAGTGGGATAGTGTTTAGTCTCTTGATGTACATGG 766
Query 779 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 818
||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TTTATTGTAATTTGTAAATGTTGTATGAATTGGAAAATTT 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5