BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472319
Length=1183
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division sit... 1796 0.0
> AT1G20830.1 | Symbols: MCD1 | multiple chloroplast division site
1 | chr1:7242920-7244904 FORWARD LENGTH=1231
Length=1231
Score = 1796 bits (972), Expect = 0.0
Identities = 1090/1147 (95%), Gaps = 7/1147 (1%)
Strand=Plus/Plus
Query 1 GAAATGGCATCCATTGATTCTCTCCAATTCCATTCTCTCTGCAATCTCCAGTCGTCGATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAAATGGCATCCATTGATTCTCTCCAATTCCATTCTCTCTGCAATCTCCAGTCGTCGATT 70
Query 61 GGAAGAACCAAGCTCCAGATTCCTTCAAGTTTGGTTATTTTCAGACGGAGACCCGTAAAT 120
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 71 GGAAGAGCCAAGCTCCAGAATCCTTCAAGTTTGGTTATTTTCAGACGGAGACCCGTAAAT 130
Query 121 CTGAACTGGGTTCAATTTGAAACTAAAAGAAGGTTCGCGTGTAAAGCGATTGATGATTCC 180
||||| ||||||||||| ||||||||| |||| |||| |||||||||||||| |||||||
Sbjct 131 CTGAATTGGGTTCAATTCGAAACTAAAGGAAGTTTCGTGTGTAAAGCGATTGGTGATTCC 190
Query 181 TCGACTCCAGATGAAGAAATTCAGAACACTCAAAATGATAATAATGTTGTTGTTGTTACT 240
||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||
Sbjct 191 TCGACTCCAGATGAAGATATTCAGAACACTCAAAGTGATGATAATGTTGTTGTTGTTA-- 248
Query 241 GCTGCTACGGCTCAGAGTGACATTATTCCCCATGATTCCGAGTATTCAGTTTCGAGGTTT 300
|||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 249 -CTGCTACGACTCAGAGTGAC---ATTCCCCATGATTCCGAGTATTCAATTTCGAGGTTT 304
Query 301 CGTAGTATGATTACCTCACTCCCTCCTCTTGTCTTCGTGATGAAGAAGTGCTCAGGGAAC 360
|| |||||| ||||| ||||||||||| |||||||| |||||||||||||||||| ||||
Sbjct 305 CGAAGTATGGTTACCACACTCCCTCCTGTTGTCTTCCTGATGAAGAAGTGCTCAGTGAAC 364
Query 361 AGCATTTGGATCGGGATCTGCATCACCGCTACTGTTTTGGTCGCTGCAATCAGGGCTTAT 420
||||||||||| ||| |||||||||| |||||||||||||||||||| || |||||||||
Sbjct 365 AGCATTTGGATTGGGGTCTGCATCACGGCTACTGTTTTGGTCGCTGCGATTAGGGCTTAT 424
Query 421 GTAGTAAGAAAGTCAAGAGATAATCAGCGTGCTGGCTCTGTTGCTGATCTTGTGAGACGT 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GTAGTCAGAAAGTCAAGAGATAATCAGCGTGCTGGCTCTGTTGCTGATCTTGTGAGACGT 484
Query 481 GGCCAGCTGAGGTCTGGCGATAGAAGAGGCATCTCCAAGTCTCTTAACTACGAGGACCCA 540
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 485 GGCCAGCTGAGGTCTGGTGATAGAAGAGGCATCTCCAAATCTCTTAACTACGAGGACCCA 544
Query 541 TTCAACAACCCTTTTGTGAAACTTGATAAAGGAAGCTCAACTGTAGAGATGTGCGGGAAA 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 545 TTCAACAACCCTTTTGTGAAACTTGATAAAGGAAGCTCAACGGTAGAGATGTGCGGGAAA 604
Query 601 GTATATCGGCTAGCTCCAGTCACACTTACAGAGAAAGAACAAACTATTCATCAGAAAAGA 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GTTTATCGGCTAGCTCCAGTCACACTTACAGAGAAAGAACAAACTATTCATCAGAAAAGA 664
Query 661 AGGTCAAGAGCTTACCAATGGAAGCGACCAACGATTTTTCTCAAAGAAGGAGACTCGATA 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 665 AGGTCAAGAGCTTACCAATGGAAGCGACCAACGATTTTTCTCAAAGAAGGGGACTCGATA 724
Query 721 CCACCTGATGTTGATCCCGATACAGTCAGATGGATCCCGGCCAATCATCCGTTTGCAACC 780
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 725 CCACCTGATGTTGATCCCGATACAGTCAGATGGATCCCGGCCAATCATCCGTTTGCCACC 784
Query 781 ACGGTTAGCGATATCGATCAAGACCTTGCCCAGAATAATGTCTACCAGAAGCAAGGTGTT 840
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ACAGTTAGCGATATCGATCAAGACCTTGCCCAGAATAATGTCTACCAGAAGCAAGGTGTT 844
Query 841 CCTTTCCGGATTCGAGCTGAGCATGAAGCTATGCAGAAAAAGCTTGAAGCTTTACAAAAT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 CCTTTCCGGATTCGAGCTGAGCATGAAGCTATGCAGAAAAAGCTTGAAGCTTTACAAAAT 904
Query 901 GAAGAGAAATTGAACAATCTGGGTATTGACAGTCAAAATGCCAGAGATTTTCAAAGGCCA 960
|| |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 905 GAGGAGAAATTGAACAATCTGAGTATTGACAGTCAAAATGCCAGAGATTTCCAGAGGCCA 964
Query 961 TACAAGTTCTCAGCCAAGCTTGAAGGCGAGAATATCCAGAAAAATTCTCAGGATAATTAT 1020
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| ||
Sbjct 965 TACAAGTTCTCAGCGAAGCTCGAAGGCGAGAATATCCAGAAGAATTCTCAGGAGAATCAT 1024
Query 1021 ACAGGCAATTCATCCTCTGAGGAAACGAACCAGTCCTGAGAACGTACTAAGCTACTTGTA 1080
||||||||||||||||||||||||||| || |||||||||| |||||||| ||| |||||
Sbjct 1025 ACAGGCAATTCATCCTCTGAGGAAACGCACAAGTCCTGAGA-CGTACTAATCTAATTGTA 1083
Query 1081 AATACGGTTTTCCCTTGAGAATCAAACTTGCGTTCCAAGAAACTGGAGATTTTCTTTGTA 1140
||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1084 AATACAGTTTTCCCTCGAGAGTCATACTTGCGTTCCAAGAAACTGGAGATTTTCTTTGTA 1143
Query 1141 GTAAATC 1147
||| |||
Sbjct 1144 GTAGATC 1150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58082030565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5