BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472320
Length=2445
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20840.1 | Symbols: TMT1 | tonoplast monosaccharide transpor... 3679 0.0
AT4G35300.1 | Symbols: TMT2 | tonoplast monosaccharide transpor... 220 4e-56
> AT1G20840.1 | Symbols: TMT1 | tonoplast monosaccharide transporter1
| chr1:7244939-7248143 REVERSE LENGTH=2499
Length=2499
Score = 3679 bits (1992), Expect = 0.0
Identities = 2298/2442 (94%), Gaps = 35/2442 (1%)
Strand=Plus/Plus
Query 2 ACCCCTATTTCAACGCCTCTTTTTCT--CTGATTtatatatatatatatatat-ata-GC 57
|||||||||||||||||||||||||| ||||||||||||| | | || | | | ||
Sbjct 11 ACCCCTATTTCAACGCCTCTTTTTCTCCCTGATTTATATAT-CGGAGAGATTTCA-AGGC 68
Query 58 AAAGCTTTCTCATTTCCTCGTAATTGCCGGCGAATTCTACTAAAGGGTTGGTTGAGCAAT 117
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 69 AAAGCTTTCTCATTTCCTCGTAATTGCCGGCGAATTCTACTAAAGAGTTTGTTGAGCAAT 128
Query 118 GAAGGGAGCGACTCTCGTTGCTCTCGCCGCCACAATCGGCAATTTCTTGCAAGGATGGGA 177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 129 GAAGGGAGCGACTCTCGTTGCTCTCGCCGCCACAATCGGCAATTTCTTACAAGGATGGGA 188
Query 178 CAATGCCACCATTGCTGGAGCTATGGTTTATATCAACAAAGACTTGAATCTACCAACCTC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 CAATGCCACCATTGCTGGAGCTATGGTTTATATCAACAAAGACTTGAATCTACCAACCTC 248
Query 238 TGTTCAAGGTCTTGTGGTTGCTATGTCATTGATTGGTGCTACGGTCATCACGACTTGCTC 297
||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 249 TGTTCAAGGTCTTGTCGTTGCTATGTCATTGATCGGTGCAACGGTCATCACGACTTGCTC 308
Query 298 TGGACCGATATCTGATTGGCTCGGGAGACGCCCGATGCTCATTTTATCATCAGTAATGTA 357
||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 309 AGGACCGATATCTGATTGGCTCGGCAGACGCCCCATGCTCATTTTATCATCAGTTATGTA 368
Query 358 TTTCGTCTGCGGTTTGATAATGCTATGGTCTCCCAATGTCTATGTTTTGTGCTTTGCTAG 417
|||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 369 TTTCGTCTGCGGTTTGATAATGTTGTGGTCTCCCAATGTCTATGTTCTGTGCTTTGCTAG 428
Query 418 ACTTCTGAATGGGTTTGGTGCCGGGCTCGCGGTTACGCTTGTCCCTGTTTACATTTCTGA 477
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 429 GCTTCTTAATGGGTTTGGTGCCGGGCTCGCGGTTACACTTGTCCCTGTTTACATTTCTGA 488
Query 478 AACCGCTCCTCCAGAGATCAGAGGACAGTTAAATACTCTCCCTCAGTTTCTTGGCTCTGG 537
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AACCGCTCCTCCGGAGATCAGAGGACAGTTAAATACTCTCCCTCAGTTTCTTGGCTCTGG 548
Query 538 TGGAATGTTTTTGTCTTACTGTATGGTTTTCACTATGTCCCTGAGTGATTCGCCTAGCTG 597
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 549 TGGAATGTTTTTGTCATACTGTATGGTTTTCACTATGTCCCTGAGTGACTCCCCTAGCTG 608
Query 598 GAGAGCGATGCTCGGTGTCCTTTCGATCCCTTCTCTTCTTTATTTGTTTCTCACGGTGTT 657
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 GAGAGCCATGCTCGGTGTCCTCTCGATCCCTTCTCTTCTTTATTTGTTTCTCACGGTGTT 668
Query 658 TTATTTGCCCGAGTCTCCTCGTTGGCTGGTTAGTAAAGGAAGAATGGACGAGGCTAAGCG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTATTTGCCCGAGTCTCCTCGTTGGCTGGTTAGTAAAGGAAGAATGGACGAGGCTAAGCG 728
Query 718 GGTTCTTCAACAGTTATGTGGCAGAGAAGATGTTACTGATGAGATGGCTCTACTAGTTGA 777
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 729 AGTTCTTCAACAGTTATGTGGCAGAGAAGATGTTACCGATGAGATGGCTTTACTAGTTGA 788
Query 778 AGGACTAGATATCGGAGGAGAAAAAACAATGGAGGATCTCTTAGTAACTTTGGAGGATCA 837
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 789 AGGACTAGATATAGGAGGAGAAAAAACAATGGAAGATCTCTTAGTAACTTTGGAGGATCA 848
Query 838 TGAAGGTGATG---CGCTTGAAACCGTTGATGAGGACGGACAAATGCGGCTTTACGGAAC 894
||||||||||| | |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 849 TGAAGGTGATGATACACTTGAAACCGTTGATGAGGATGGACAAATGCGGCTTTATGGAAC 908
Query 895 CCACGAGAATCAATCGTATATTGCTAGACCTGTCCCAGAACACCAGAGTTCAGTTGGGCT 954
|||||||||||||||||| |||||||||||||||||||||| | || ||| |||||||
Sbjct 909 CCACGAGAATCAATCGTACCTTGCTAGACCTGTCCCAGAACAAAATAGCTCACTTGGGCT 968
Query 955 ACGCTCTCGCCATGGAAGCTTAGCAAACCAAAGCATGATCCTTAAAGATCCGCTCGTCAA 1014
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ACGCTCTCGCCACGGAAGCTTAGCAAACCAAAGCATGATCCTTAAAGATCCGCTCGTCAA 1028
Query 1015 TCTATTCGGCAGTCTCCACGAGAAGATGCCAGAAGCAGGTGGAAACACTCGGAGTGGGAT 1074
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1029 TCTTTTTGGCAGTCTCCACGAGAAGATGCCAGAAGCAGGCGGAAACACTCGGAGTGGGAT 1088
Query 1075 TTTTCCTCATTTTGGAAGCATGTTCAGTACTAATGCCGATGCGCCTCACGGTAAACCGGC 1134
||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1089 TTTCCCTCATTTCGGAAGCATGTTCAGTACTACTGCCGATGCGCCTCACGGTAAACCGGC 1148
Query 1135 TCATTGGGAAAAAGACATAGAGAGCCATTATAACAAAGACAatgatgactatgcaactga 1194
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1149 TCATTGGGAAAAGGACATAGAGAGCCATTACAACAAAGACAATGATGACTATGCGACTGA 1208
Query 1195 tgatggtgcgggtgatgatgatgactccgataatgatCTGCGTAGCCCATTAATGTCGCG 1254
||||||||||||||||||||||||||| || || ||| |||||||||| |||||||||||
Sbjct 1209 TGATGGTGCGGGTGATGATGATGACTCGGACAACGATTTGCGTAGCCCCTTAATGTCGCG 1268
Query 1255 CCAGACAACGAGCATGGACAAGGATATGATCCCACATCCTACAAGCGGAAGCACTCTGAG 1314
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 1269 CCAGACCACAAGCATGGACAAGGATATGATCCCACATCCTACAAGTGGAAGCACTTTAAG 1328
Query 1315 CATGAGACGGCACAGTACGCTTATGCAAGGCAACGGTGAAAGCAGCATGGGAATTGGTGG 1374
||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1329 CATGAGACGACACAGTACGCTTATGCAAGGCAACGGCGAAAGTAGCATGGGAATTGGTGG 1388
Query 1375 TGGTTGGCATATGGGATATAGATATGAAAACGACGAATACAAAAGGTATTATCTTAAAGA 1434
|||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 1389 TGGTTGGCATATGGGATATAGATACGAAAACGATGAATACAAGAGGTATTATCTTAAAGA 1448
Query 1435 GGATGGCGCTGAATCTCGCCGTGGCTCAATCATTTCTGTTCCCGGAGGTCCTGATGGTGG 1494
||||| |||||||||||||||||||| ||||| ||| ||||||||||||| ||||||||
Sbjct 1449 AGATGGAGCTGAATCTCGCCGTGGCTCGATCATCTCTATTCCCGGAGGTCCGGATGGTGG 1508
Query 1495 AGGCAGCTACATTCACGCTTCTGCCCTTGTAAGCAGATCCGTTCTTGGTCCTAAATCGGT 1554
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1509 AGGCAGCTACATTCACGCTTCTGCCCTTGTAAGCAGATCTGTTCTTGGTCCTAAATCAGT 1568
Query 1555 CCATGGATCTGCCATGGTTCCCCCGGAGAAAATCGCTGGCTCTGGACCACTCTGGTCTGC 1614
|||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1569 TCATGGATCCGCCATGGTTCCCCCGGAGAAAATTGCTGCCTCTGGACCACTCTGGTCTGC 1628
Query 1615 TCTTCTTGAACCTGGTGTTAAGCGTGCGTTGGTCGTTGGTGTCGGCATTCAGATACTACA 1674
||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 1629 TCTTCTTGAACCTGGTGTTAAGCGTGCCTTGGTTGTTGGTGTCGGCATTCAAATACTGCA 1688
Query 1675 GCAGTTTTCGGGTATCAATGGAGTTCTCTACTACACTCCTCAGATTCTAGAACGGGCTGG 1734
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1689 GCAGTTTTCAGGTATCAATGGAGTTCTCTACTACACTCCTCAGATTCTCGAACGGGCTGG 1748
Query 1735 CGTAGATATTCTTCTTTCGAGCCTCGGACTAAGTTCCATCTCGGCGTCATTCCTCATCAG 1794
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1749 CGTAGATATTCTTCTTTCGAGCCTCGGACTAAGTTCCATCTCTGCGTCATTCCTCATCAG 1808
Query 1795 TGGTTTAACAACATTACTCATGCTCCCAGCCATTGTCGTTGCCATGAGACTCATGGATGT 1854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 CGGTTTAACAACATTACTCATGCTCCCAGCCATTGTCGTTGCCATGAGACTCATGGATGT 1868
Query 1855 TTCCGGAAGAAGGTCATTACTTCTCTGGACAATCCCAGTTCTCATCGTCTCACTTGTCGT 1914
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1869 ATCCGGAAGAAGGTCATTACTTCTCTGGACAATCCCAGTTCTCATTGTCTCACTTGTCGT 1928
Query 1915 CCTTGTCATCAGCGAGCTCGTCCACATTAGCAAAGTCGTGAACGCAGCGCTCTCCACGGG 1974
||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| ||
Sbjct 1929 CCTTGTCATCAGCGAGCTCATCCACATCAGCAAAGTCGTGAACGCAGCACTCTCCACAGG 1988
Query 1975 TTGTGTCGTGCTCTACTTCTGCTTCTTCGTGATGGGCTACGGTCCGATTCCAAACATCCT 2034
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1989 TTGTGTCGTGCTCTACTTCTGCTTCTTCGTGATGGGTTACGGTCCCATTCCAAACATCCT 2048
Query 2035 CTGTTCTGAAATCTTCCCAACAAGAGTCCGTGGTCTCTGCATCGCCATTTGCGCTATGGT 2094
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 2049 CTGTTCTGAAATCTTCCCAACAAGAGTCCGTGGTCTCTGCATCGCCATATGTGCTATGGT 2108
Query 2095 CTTTTGGATCGGAGACATTATTGTCACTTACTCACTTCCCGTTCTCCTCAGCTCGATCGG 2154
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2109 CTTTTGGATTGGAGACATTATTGTCACGTACTCACTTCCCGTTCTCCTCAGCTCGATCGG 2168
Query 2155 ACTAGTTGGTGTTTTCAGCATTTACGCTGCGGTTTGCGTTATCTCATGGATCTTCGTTTA 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 ACTAGTTGGTGTTTTCAGCATTTACGCTGCGGTTTGCGTTATCTCATGGATCTTCGTTTA 2228
Query 2215 CATGAAAGTCCCGGAGACCAAAGGCATGCCTTTGGAAGTTATCACAGACTACTTTGCCTT 2274
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 CATGAAAGTCCCGGAGACTAAAGGCATGCCTTTGGAAGTTATCACAGACTACTTTGCCTT 2288
Query 2275 TGGAGCTCAAGCACAAGCACAAGCTTCTGCCCCTTCTAAGGATATATAACTTGTAAC--- 2331
|||||||||||| ||||| |||||| ||||||||||||||||||||||||||
Sbjct 2289 TGGAGCTCAAGCTCAAGC------TTCTGCTCCTTCTAAGGATATATAACTTGTAACTTT 2342
Query 2332 CT-----GT-----G-T------ACCTAAAGAttctcttcatcccctttttgttttgttt 2374
|| || | | |||||||||||||||||||||||||||||||||||||
Sbjct 2343 CTTCTTCGTCAATTGCTCTGTGTACCTAAAGATTCTCTTCATCCCCTTTTTGTTTTGTTT 2402
Query 2375 ctcagaaaccttcatttcgtttttgttccttttctttttttt 2416
||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct 2403 TTCAGATACCTTCATATCGTTTTTGTTTCTTTTTTTTTTTTT 2444
> AT4G35300.1 | Symbols: TMT2 | tonoplast monosaccharide transporter2
| chr4:16796256-16799553 REVERSE LENGTH=2590
Length=2590
Score = 220 bits (119), Expect = 4e-56
Identities = 520/708 (73%), Gaps = 49/708 (7%)
Strand=Plus/Plus
Query 1615 TCTTCTTGAACCTGGTGTTAAGCGTGCGTTGGTCGTTGGTGTCGGCA-TTCAGATACTAC 1673
||||| ||| ||||| || |||||||| || ||||| || || || | |||| ||||| |
Sbjct 1718 TCTTCATGATCCTGGAGTCAAGCGTGCATTAGTCGTAGGAGTTGG-ACTTCAAATACTTC 1776
Query 1674 AGCAGTTTTCGGGTATCAATGGAGTTCTCTACTACACTCCTCAGATTCTAGAACGGGCTG 1733
||||||| || || ||||| |||||||| |||||||| || || || || || | ||| |
Sbjct 1777 AGCAGTTCTCAGGCATCAACGGAGTTCTTTACTACACACCGCAAATCCTTGAGCAGGCGG 1836
Query 1734 GCGTAGATATTCTTCTTTCGAGCCT-CGGACTAAGTTCCAT-CTCGGCGTCATTCCTCAT 1791
| || | || || || |||| | | ||| | |||| | | ||| || || || || ||
Sbjct 1837 GTGTCGGGATCCTACTATCGAACATGGGGA-TTAGTT-CTTCCTCAGCATCCTTACTTAT 1894
Query 1792 CAGTGGTTTAACAACATTACTCATGCTCCCAGCCATTGTC-GTTGCCATGAGACTCATGG 1850
|||| || ||||| || | ||| | || || || | | ||||| ||||| |||||||
Sbjct 1895 AAGTGCATTGACAACCTTTGTGATGTTACCTGCAATAG-CTGTTGCAATGAGGCTCATGG 1953
Query 1851 ATGTTTCCGGAAGAAGGTCATTACTTCTCTGGACAATCCCAGTTCTCAT--CGTCTC-AC 1907
|| |||| || ||||| | || |||||| || || ||| | || || | |||| |
Sbjct 1954 ATCTTTCTGGTCGAAGGACCTTGCTTCTCACCACGATACCAATCCTGATAGCATCTCTA- 2012
Query 1908 TTGTCGTCCTT-GTCATCAGC-GAGCTCGTCCACATTAGCA-AAGTCGTGAACGCAGCG- 1963
||| || || || ||| | | || || ||||| | || | | ||| |||| | |
Sbjct 2013 TTG--GT-TTTAGTAATC-TCAAATCTTGTTCACATGAACAGCA-TTGTGCACGC-G-GT 2065
Query 1964 C-TCTCCACGGGT-TGTGTCGTGCTCTACTTCTGCTTCTTCGTGATGGGCTACGGTCC-G 2020
| | || || || | || ||||||||||||||||||||||||||||| | |||||| |
Sbjct 2066 CTTATCAAC-CGTAAGCGTTGTGCTCTACTTCTGCTTCTTCGTGATGGGTTTCGGTCCTG 2124
Query 2021 ATTCCAAACATCCTCTGTTCTGAAATCTTCCCAACAAGAGTCCGTGGTCTCTGCATCGCC 2080
| ||||||||||||||||| || || || ||||| ||||||| || |||||||||||
Sbjct 2125 CT-CCAAACATCCTCTGTTCAGAGATTTTTCCAACTCGAGTCCGCGGAATCTGCATCGCC 2183
Query 2081 ATTTGCGCTA-TGGTCTTTTGGATCGGAGACATTATTGTCACTTACTCACTTCCCGTTCT 2139
|| ||||| | | ||| |||||| | ||||| || ||||||||| || ||||| ||
Sbjct 2184 ATCTGCGC-ACTCACCTTCTGGATCTGTGACATAATCGTCACTTACAGTCTCCCCGTGCT 2242
Query 2140 CCTCAGCTCGATCGGACTAGTTGGTGT-TTTCAGCATTTACGC--TGCGG-T-TTGCGTT 2194
|||| || || ||||||| |||||| ||| | || ||||| | || | |||| ||
Sbjct 2243 GCTCAAATCCATTGGACTAGCTGGTGTGTTTG-GAATGTACGCAAT-CGTATGTTGCATT 2300
Query 2195 ATCTCATGGATCTTCGT-TTACATGAAAGTCCCGGAGACCAAAGGCATGCCT-TTGGAAG 2252
|| |||| |||| || || ||| ||||||||||| || ||||||||||| ||| |||
Sbjct 2301 -TC--ATGGGTCTTTGTGTT-CATTAAAGTCCCGGAAACTAAAGGCATGCCACTTG-AAG 2355
Query 2253 TTATCACAGACTACTTTGCCT-TTGGAGCTCAAGCACAAGCACAAGCT 2299
| |||||||| | |||| | | |||||||| | | |||||| |||||
Sbjct 2356 TCATCACAGAGTTCTTTTC-TGTTGGAGCT-A-G-ACAAGCTGAAGCT 2399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121435118355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5