BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472321
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20850.1 | Symbols: XCP2 | xylem cysteine peptidase 2 | chr1... 1919 0.0
> AT1G20850.1 | Symbols: XCP2 | xylem cysteine peptidase 2 | chr1:7252174-7253731
FORWARD LENGTH=1299
Length=1299
Score = 1919 bits (1039), Expect = 0.0
Identities = 1175/1240 (95%), Gaps = 11/1240 (1%)
Strand=Plus/Plus
Query 1 TATCAACTAACAAAAGAAAAACAAACTTACTCAAATGGCTCTCTCTTCACCTTCAAGAAT 60
|||||| | ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 TATCAAGTGACAAAAGAAAAACAAACGTACTCAAATGGCTCTTTCTTCACCTTCAAGAAT 60
Query 61 CCTCTGTTTTGCTCTTGTCTTATCCGCTGCAACTCTCTCCCTCTCTGTCGCTGCTTCCCA 120
||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||||||
Sbjct 61 CCTCTGTTTTGCTCTTGCCTTATCCGCTGCTTCTCTCTCCCTCTCTTTCGCTTCTTCCCA 120
Query 121 CGATTACTCCATCGTTGGATATTCCCCCGAGGATTTAGAATCTCATGACAAACTCATCGA 180
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 121 CGATTACTCCATCGTTGGATACTCCCCCGAGGATTTGGAATCTCATGACAAACTCATAGA 180
Query 181 ACTCTTTGAGAACTGGATCTCCAATTTTGAGAAAGCTTATGAAACCGTTGAAGAGAAGTT 240
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACTCTTCGAAAACTGGATCTCAAATTTTGAGAAAGCTTATGAAACCGTTGAAGAGAAGTT 240
Query 241 GCTTAGGTTCGAAGTTTTCAAGGACAATCTGAAGCACATCGATGAGACTAACAAGAAAGT 300
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 241 TCTTAGGTTCGAAGTTTTCAAGGATAATCTAAAGCACATCGATGAGACTAACAAGAAAGG 300
Query 301 GAAAAGCTACTGGCTCGGGCTCAACGAGTTTGCAGATTTGAGCCACGAAGAGTTCAAGAA 360
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 301 GAAAAGCTACTGGCTCGGGCTCAACGAGTTTGCGGATTTGAGCCATGAGGAGTTCAAGAA 360
Query 361 AATGTATTTAGGGCTCAAGACTGATATAGTGAGACGAGACGAAGAAAGATCTTACGCGGA 420
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 361 AATGTATTTAGGGCTCAAGACTGATATAGTGAGACGCGATGAAGAAAGATCTTACGCAGA 420
Query 421 GTTCGCTTATAGGGACGTAGAAGCTGTGCCTAAGTCTGTTGACTGGAGAAAGAAAGGAGC 480
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 GTTCGCTTACAGGGACGTCGAAGCTGTTCCTAAGTCTGTTGACTGGAGAAAGAAAGGAGC 480
Query 481 AGTGGCCGAAGTTAAGAACCAGGGCTCTTGTGGAAGTTGTTGGGCGTTTTCGACAGTGGC 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 TGTGGCGGAAGTTAAGAACCAGGGCTCTTGTGGAAGTTGTTGGGCGTTTTCGACAGTAGC 540
Query 541 AGCAGTGGAAGGTATAAACAAGATTGTGACAGGAAACTTGACAACATTGTCTGAACAAGA 600
||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 AGCTGTCGAAGGTATAAACAAGATTGTGACAGGAAACTTGACAACATTGTCAGAACAAGA 600
Query 601 ACTCATAGACTGTGACACGACCTACAACAATGGCTGCAACGGTGGTCTCATGGACTATGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACTCATAGACTGTGACACGACCTACAACAATGGCTGCAACGGTGGTCTCATGGACTATGC 660
Query 661 ATTTGAGTACATTGTTAAAAATGGAGGTCTACGCAAGGAAGAGGATTATCCTTACTCTAT 720
||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 661 CTTTGAGTACATTGTTAAGAACGGAGGTCTACGCAAGGAAGAAGATTATCCTTACTCTAT 720
Query 721 GGAAGAAGGAACTTGCGAGATGCAAAAGGATGAATCTGAAACAGTAACCATTGATGGACA 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 721 GGAAGAAGGAACTTGCGAGATGCAAAAGGATGAATCTGAAACAGTAACCATTAATGGACA 780
Query 781 CCAAGATGTACCTACGAATGATGAGAAGAGCCTTTTGAAGGCATTGGCTCATCAGCCTCT 840
|||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 781 CCAAGACGTACCTACTAATGATGAGAAGAGTCTCTTGAAGGCATTGGCTCATCAGCCTCT 840
Query 841 CAGTGTCGCCATTGACGCCTCTGGTAGAGAGTTCCAGTTCTACAGCGGCGTAAGTGTGTT 900
||||||||||||||| || ||||||||||||||||||||||| ||||||| | |||||
Sbjct 841 CAGTGTCGCCATTGATGCATCTGGTAGAGAGTTCCAGTTCTATAGCGGCG---GCGTGTT 897
Query 901 TGATGGGCGGTGCGGGGTTGACCTGGACCACGGTGTGGCTGCGGTTGGGTATGGATCAAG 960
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 898 TGATGGGCGGTGCGGGGTTGATCTTGACCACGGTGTGGCTGCGGTTGGGTATGGATCAAG 957
Query 961 CAAGGGTTCAGATTACATAATTGTGAAGAATTCTTGGGGACCAAAATGGGGAGAGAAAGG 1020
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 958 CAAGGGTTCAGATTACATCATTGTGAAGAATTCTTGGGGACCAAAATGGGGAGAAAAAGG 1017
Query 1021 TTACATCAGGCTGAAGAGGAACACTGGGAAACCAGAGGGTCTCTGTGGAATCAACAAGAT 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 TTACATCAGGCTGAAGAGGAACACTGGGAAACCAGAGGGTCTCTGTGGAATCAACAAGAT 1077
Query 1081 GGCTTCTTTCCCCACCAAAACTAAGTGATCATCAGATCATTCTCTCTTATCTGCATTTGA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGCTTCTTTCCCCACCAAAACTAAGTGATCATCAGATCATTCTCTCTTATCTGCATTTGA 1137
Query 1141 TCATCATCTTACAGTGTCTTCGTTTTTTCTCTTTTGATGTA--A--G----TCTTGTAAC 1192
||| |||||||||||||||||||||||||||||||||| || | | |||||||||
Sbjct 1138 TCAGCATCTTACAGTGTCTTCGTTTTTTCTCTTTTGATTTATCAACGGAAGTCTTGTAAC 1197
Query 1193 AACTATGTGCAATAATACCTATATATAAGTAGCAGAGAAT 1232
||||||||||||||||||||||||||||| ||||||||||
Sbjct 1198 AACTATGTGCAATAATACCTATATATAAGAAGCAGAGAAT 1237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5