BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472323
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20870.1 | Symbols: | HSP20-like chaperones superfamily pro... 2043 0.0
> AT1G20870.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:7259102-7260775 REVERSE LENGTH=1577
Length=1577
Score = 2043 bits (1106), Expect = 0.0
Identities = 1310/1410 (93%), Gaps = 8/1410 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCTGTGTAGCGATGGTTTATCGAGCGATCAGTATTTCTTGGTGAATTTCATCATG 60
|||||||||| |||||| || |||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTCTGTATAGCGACGGATTATCGAGTGATCAGTATTTCTTGGTTAATTTCATCATG 60
Query 61 AGCAATTACTTGGGTCCTGATGTGTATTCGGATAACCCAAGATGTTCAGCTTCTCAAAGA 120
||||| ||||||||||||||||| ||||| |||||||||||||||||| |||||||||||
Sbjct 61 AGCAACTACTTGGGTCCTGATGTCTATTCTGATAACCCAAGATGTTCATCTTCTCAAAGA 120
Query 121 TTAGCCAAAGGTTCACCACCTTACACTTTGATGCACATTGGATCTTCCTCTTTAACTGTT 180
||||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTAGCTAGAGGTTTGCCACCTTACACTTTGATGCACATTGGATCTTCCTCTCTAACTGTT 180
Query 181 GCGCAGCTGCAGAACTTGTACTATAATGTACTGAGAAACGCAAAGTCCAGCCTTGTTCTC 240
| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 181 TCCCAGCTACAGAACTTGTACTATAATGTACTCAGAAACGCCAAGTCCAGCCTCCTTCTT 240
Query 241 CATCCAGACATGATTTATATGTATCTCAAGGGATACCTACCTTTGGAACCAAGTGGAAAA 300
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 241 CATCCAGACATGATTTATATGTATCTCAAGGGATATCTACCATTGGAACCAAGTGGAAAG 300
Query 301 TTTCCTCAGTTCACGCATTTTTTCCCGACGAATCTTCACCCGCAGAAAAGGTATTCCCCG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTTCCTCAGTTCACGCATTTTTTCCCGACGAATCTTCACCCGCAGAAAAGGTATTCCCCG 360
Query 361 AGCCATGAGATTGTGAAAGGAATTGTTGTTATTGATGATCCTGCAGTTGCATTCATAAAC 420
||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 361 AGCCACGAGATTGTGAAAGGAATTGTTGTTATTGATGATCCTGCAGTAGGGTTCATAAAC 420
Query 421 AAGGAGGAACTCCAAAGATTCAGATACTTGTCGCGTTTGGACGACCTGAAAATCGATAGA 480
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGAAGAACTCCAAAGGTTCAGATGCTTGTCGCGTTTGGACGACCTGAAAATCGATAGA 480
Query 481 GTCGTGTCTTTATCTCCTCGGGGTGTGAAGCTGGATGAAATCCGGGAAACAGAGCTGGAC 540
||| ||||||||||||||||| | | || |||||||||| ||||||||| |||| ||||
Sbjct 481 GTCACGTCTTTATCTCCTCGGG-T-T-AATCTGGATGAAAGCCGGGAAACTGAGCAGGAC 537
Query 541 TGTTCAAGAAATGGGGAAGCGACAACAGCTAATGGACTTGT-ACCTAACGAAGACTACAA 599
|||||||||||||| || |||||| ||||||||| |||| || |||||| ||||||||
Sbjct 538 TGTTCAAGAAATGGTGATGCGACA---GCTAATGGAGTTGTCAC-TAACGAGGACTACAA 593
Query 600 TTCATCTGGAGAGCTTCAAGAAACGTGCAAGAAAAATAAAGGGGAAGAAGCGGTTGCTAG 659
||||||||| |||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 594 TTCATCTGGTGAGCTTCAAGAAACGTGCAAGAGAAAGGAAGGGGAAGACGCGGTTGCTAG 653
Query 660 TTGCGTAATCAGTGAACCAGAAAGACTTTCGGGAGACATACCAGAAAGTCAGGAAATGAA 719
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 654 TTGCGTAATCAGTGAACCAGAAAGACTTTCGGGAGACATACCAGAAAGCCAGGGAATGAA 713
Query 720 GCAGGACTGTTCAAGAAATGGAGAATCGGCATTCAATGGAATTGTCTCTGACCAAGACTA 779
|||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||
Sbjct 714 GCAGGACTGTTCAAGAAACGGAGAATCTGCATTCAGTGGAATTGTCTCTGACCAAGACTA 773
Query 780 CTATTCATTTGTAGAGCCTCGAGAAACACACAAGCGAAAGAACGAGGAAGAAGAAGCAGT 839
||||||||||||| ||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 774 CTATTCATTTGTAAAGCTTCCAGAAACATGCAAGCGAAAGAACAAGGAAGAAGAAGCAGT 833
Query 840 TACTGGTCATGCTGTTTGTGGAACAAGTAAAACCCCTGAAAGATTTCGTGAGACATACAA 899
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 TACTGGTCATGCTGTTAGTGGAACGAGTAAAACCCCTGAAAGATTTCGTGAGACATACAA 893
Query 900 GAGAAAACGGTTCAAGAACTCATCAAAAAAGGCAACAAACAAGAATGGCGAAACTCCTAT 959
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 894 GAGAAGACGGTTCAAGAACTCATCAAAAAAGGCAACAAACAAGAATGGTGAAACTCTTAT 953
Query 960 GGAAAGAGAAAAAACAGATAAGCCTATACCTGTTCCTCCTGAGATGAAGGAAAGCGATGC 1019
||||||||||||||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct 954 GGAAAGAGAAAAAACAGATAAGCCTATACCTTTTTCTTCGGAGATGAAGGAAAGCGATGC 1013
Query 1020 AGAACCATCAGTTGTAACTACCGGAACAGCCAGTAAAGAAACTCTAGGAACATCTGTTGG 1079
|||||| || ||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1014 AGAACCGTCGGTTGTAACTACTGGAACAGCCAGTAAAGAAACTCTAGGATCATCTGTTGG 1073
Query 1080 TGTCGTCGACATTGGTGTCAACAAAGTTGCTTACTTTTTTCAGGTTGCTTTGCCCGGTGT 1139
||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1074 TGTTGTTGACATTGGTGTCAACAAGGTTGCTTACTTTTTTCAGGTTGCTTTGCCCGGTGT 1133
Query 1140 CCGCAAAGATTATGGTGAATTCAGCTGCGAGATTGAATCAGATGGTAAGGTGATACTTGA 1199
|||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct 1134 CCGCAAAGATTACGGTGAATTCAGCTGTGAGATTGAATCAGATGGAAAGGTTATACTGGA 1193
Query 1200 GGGATCAACTACGACAGGCGAAAAAACGATCAAGAGGCATTCTCGGGTTTTTGAAATGAA 1259
|||||||||||| | ||||||||||| |||||||| ||||||||||| || || |||||
Sbjct 1194 GGGATCAACTACAAGAGGCGAAAAAAATATCAAGAGACATTCTCGGGTGTTCGAGATGAA 1253
Query 1260 AATCCGGAAGCTGTGTCCGCCTGGACCATTCAAGCTGTGCTTTAACCTCCCAGGACCAGT 1319
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 TATCCGGAAGCTGTGTCCGCCTGGACCATTCAAGCTGTGCTTTAACCTCCCGGGACCAGT 1313
Query 1320 TGATCCGCGGCTATTCTCTCCTAACTTCCGATCAGATGGTATCTTCGAGGCTGTCATCAT 1379
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1314 TGATCCGCGGCTATTCTCTCCTAACTTCCGATCAGATGGTATCTTCGAGGGAGTCATCAT 1373
Query 1380 CAGACACAAAAACTCTTAATTAAACCGGAG 1409
| ||||||||||||||||||||||||||||
Sbjct 1374 CCGACACAAAAACTCTTAATTAAACCGGAG 1403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75100015320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5