BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472326
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20900.1 | Symbols: ESC, ORE7, AHL27 | Predicted AT-hook DNA... 2435 0.0
> AT1G20900.1 | Symbols: ESC, ORE7, AHL27 | Predicted AT-hook DNA-binding
family protein | chr1:7272556-7274072 FORWARD LENGTH=1517
Length=1517
Score = 2435 bits (1318), Expect = 0.0
Identities = 1451/1514 (96%), Gaps = 14/1514 (1%)
Strand=Plus/Plus
Query 1 GGACCAAAAATTTATTGCAGAGTCGCACATGAATCTCAAGCTTCTCTCTCCttttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GGACCAAAAATTTATTGCAGAGTCGCACATGAATCTCAAGCTTCTCTCTCC-TTTTTTTC 59
Query 61 CCAGAGCACATCAGAATCGCTAAATACGACTCGTATGC-AATAAGAAGCTGCTTCTTTCT 119
||| |||||||||||||||||||||||||||| ||||| || |||||||| |||||||||
Sbjct 60 CCATAGCACATCAGAATCGCTAAATACGACTCCTATGCAAAGAAGAAGCTACTTCTTTCT 119
Query 120 CTTGCCCTAATTAAGCTACCTAACTAGGGTTTCCTCTTACCTTTCATGAGAGAGATCATT 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTTGCCCTAATTAATCTACCTAACTAGGGTTTCCTCTTACCTTTCATGAGAGAGATCATT 179
Query 180 TAACATAAGTCACCtttttt-tATCTTTTGCTTCGTCTTTAATTTAGTTCTGTTCTTGGT 238
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAACATAAGTCACCTTTTTTATATCTTTTGCTTCGTCTTTAATTTAGTTCTGTTCTTGGT 239
Query 239 CTGTTTCTATATTTTGTCGGCTTGTGTAACCGATCACACCTTAATGCTTTAGCTATTGGT 298
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 240 CTGTTTCTATATTTTGTCGGCTTGCGTAACCGATCACACCTTAATGCTTTAGCTATTGTT 299
Query 299 TCCTCAAAATCCTGAGTTTTGACTTCTCGATCTGAGTTTCCTTTTTCTCTCTTCACGCTC 358
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 300 TCCTCAAAATCATGAGTTTTGACTTCTCGATCTGAGTTTTCTTTTTCTCTCTTTACGCTC 359
Query 359 TTCTTCACCTAGCTCCCAATATATGAGCGAGAAGGATCAAGATATCAAGAAATTGATTTG 418
|||||||||||||| ||||||||||| |||| |||||||||| ||| |||||||||||||
Sbjct 360 TTCTTCACCTAGCTACCAATATATGAACGAGCAGGATCAAGA-ATCGAGAAATTGATTTG 418
Query 419 AGCTGGCGAATAAGCAGTGGTGGGACAGGGAATTAGTAGATGCGGCGGCGATGGAAGGCG 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 419 AGCTGGCGAATAAGCAGTGGTGGGATAGGGAATTAGTAGATGCGGCGGCGATGGAAGGCG 478
Query 479 GTTACGAGCAAGGCGGTGGAGCTTCTAGATACTTCCATAACCTCTTTAGACCGGAGATTC 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTACGAGCAAGGCGGTGGAGCTTCTAGATACTTCCATAACCTCTTTAGACCGGAGATTC 538
Query 539 ACCACCAACAGCTTCAACCGCAGGGTGGGATCAATCTTATCGACCAGCATCATCATCAGC 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 539 ACCACCAACAGCTTCAACCGCAGGGCGGGATCAATCTTATCGACCAGCATCATCATCAGC 598
Query 599 ACCAGcaacatcaacaacaacaacaacaacaacaaAAGTCTGATGATTCAAGAGAATCTG 658
||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 599 ACCAGCAACATCAACAACAACAACAAC--C-------GTCGGATGATTCAAGAGAATCTG 649
Query 659 ATCACTCAAACAAAGATCATCATCAACAGGGTCGACCCGATTCAGACCCGAATACATCAA 718
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 ACCATTCAAACAAAGATCATCATCAACAGGGTCGACCCGATTCAGACCCGAATACATCAA 709
Query 719 GTTCAGCACCCGGAAAACGTCCACGTGGACGTCCACCAGGATCTAAGAACAAAGCCAAGC 778
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GCTCAGCACCGGGAAAACGTCCACGTGGACGTCCACCAGGATCTAAGAACAAAGCCAAGC 769
Query 779 CACCGATCATAGTAACCCGCGATAGCCCCAACGCGCTTAGATCTCACGTCCTTGAGGTAT 838
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 770 CACCGATCATAGTAACTCGTGATAGCCCCAACGCGCTTAGATCTCACGTTCTTGAAGTAT 829
Query 839 CACCTGGAGCTGATATAGTTGAGAGTGTTTCCACTTACGCAAGGAGGAGAGGGAGAGGCG 898
| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 830 CTCCTGGAGCTGACATAGTTGAGAGTGTTTCCACGTACGCTAGGAGGAGAGGGAGAGGCG 889
Query 899 TCTCCGTTTTAGGAGGAAACGGCACCGTATCTAACGTCACTCTCCGTCAGCCAGTCAATC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 890 TCTCCGTTTTAGGAGGAAACGGCACCGTATCTAACGTCACTCTCCGTCAGCCAGTCACTC 949
Query 959 CCGGAAATGGCGGTGGTGTGTCCGGAGGAGGAGGAGTTGTGACTTTACATGGAAGGTTTG 1018
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CTGGAAATGGCGGTGGTGTGTCCGGAGGAGGAGGAGTTGTGACTTTACATGGAAGGTTTG 1009
Query 1019 AGATTCTTTCACTAACCGGGACTGTTTTGCCACCTCCTGCACCTCCTGGTGCCGGTGGTT 1078
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1010 AGATTCTTTCGCTAACGGGGACTGTTTTGCCACCTCCTGCACCGCCTGGTGCCGGTGGTT 1069
Query 1079 TGTCTATATTTCTAGCTGGAGGACAAGGTCAGGTGGTCGGAGGAAGCGTGGTGGCTCCCC 1138
||||||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1070 TGTCTATATTTTTAGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGCGTTGTGGCTCCCC 1129
Query 1139 TTATTGCATCAGCTCCGGTTATACTAATGGCTGCTTCGTTCTCAAATGCGGTTTTCGAGA 1198
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1130 TTATTGCATCAGCTCCGGTTATACTAATGGCGGCTTCGTTCTCAAATGCGGTTTTCGAGA 1189
Query 1199 GACTACCGATTgaggaggaggaggaagagggtggtggtggtggtggaggaggaggaggag 1258
|||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1190 GACTACCGATTGAGGAGGAGGAAGAAGAAGGTGGTGGTGGCGGAGGAGGAGGAGGAGGAG 1249
Query 1259 gGCCACCGCAGATGCAGCAAGCTCCATCAGCATCTCCGCCGTCTGGAGTGACCGGTCAGG 1318
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GGCCACCGCAGATGCAACAAGCTCCATCAGCATCTCCGCCGTCTGGAGTGACCGGTCAGG 1309
Query 1319 GACAGTTAGGAGGTAATGTGGGTGGTTATGGGTTTTCCGGTGATCCTCATTTGCTTGGAT 1378
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1310 GACAGTTAGGAGGTAATGTGGGTGGTTATGGGTTTTCTGGTGATCCTCATTTGCTTGGAT 1369
Query 1379 GGGGAGCTGGAACACCTTCAAGACCACCTTTTTAATTGAATTTTAATGTCCGGAAATTTA 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 GGGGAGCTGGAACACCTTCAAGACCACCTTTTTAATTGAATTTTAATGTCCGGAAATTTA 1429
Query 1439 TGTGTTTTTATCATCTTGTGGAGTCGTCTTTCTTTTGGGATCTTTGGTGTTTAAA-TTTA 1497
|||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 1430 TGTGTTTTTATCATCTTGTGGAGTCGTCTTTCCTTTGGGATATTTGGTGTTTAATGTTTA 1489
Query 1498 GTTGATATGCATAT 1511
||||||||||||||
Sbjct 1490 GTTGATATGCATAT 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74547809325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5