BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472327
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 2324 0.0
AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-contai... 575 5e-163
> AT1G20910.1 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:7276943-7281138 REVERSE LENGTH=1638
Length=1638
Score = 2324 bits (1258), Expect = 0.0
Identities = 1494/1602 (93%), Gaps = 39/1602 (2%)
Strand=Plus/Plus
Query 22 tcttcttcttcttcttccagtttctttcaatttctcCGGCTGCTAAACCCTAGCGCGCCG 81
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 42 TCTTCTTCTTCTTCCTCCAGCTTCTTTCAATTTCTCCGGCTGCTAAACCCTAGCGCGCCG 101
Query 82 CCGGAGGT-CCTGCGTTCTTATCCCGTGCTTTCCTCGCCGTCGCCGTCGCCGTCGCTGCA 140
|||| || |||||||||| || || | || | | ||||||||||||||||||||
Sbjct 102 TCGGA-GTCCCTGCGTTCTCATACC-AACCTT--T--AC-TCGCCGTCGCCGTCGCTGCA 154
Query 141 GAACTCGGAATTGAAGCATAAGATGGTGGATACCGAAATGCAAGAGCAAGATGTGACTTT 200
||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 GAACT-GAAATCGAAGCTTAAGATGGTGGATACCGAAATGCAAGAGCAAGATGTGACTTT 213
Query 201 TGGTGCTGAGGATGTCCTTGTTGAGACAAAGTATTTAGAGGAAGAACCTTTGGAGCCAGA 260
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 214 TGGTGC---------CCTTGTTGAGACAAAGTATTTAGAGGAAGAACCTTTGGAGCCAGA 264
Query 261 AAATTATCAGAACCCTAGTGAAATCCCTCAGCCCCTTGTTCTTGGAGATGGTCAGGCTAA 320
|||| |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 265 AAATGATCACAACCCTAGTGAAATCCCGCAGCCCCTTCTTCTTGGAGATGGTCAGGCTAA 324
Query 321 TAATGGTCATGGGATGAATGGT-G-G-TGTTGGAGTTGTTGACCACTCTGAAAGGAAGAC 377
|||||||||||| ||||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 325 TAATGGTCATGGCATGAATGGTGGTGCTGTTGGAGTTGTTGACCACTCTGAAAGGAAGAC 384
Query 378 TCGTAAGGTGCAAATGTTGAGTCCTAAGACTGAAGTTGAAAACACCAAAAAGAGGAAGTC 437
||||| ||||||||||||||||||||||||||||| ||| || |||||||||||||| |
Sbjct 385 TCGTAGGGTGCAAATGTTGAGTCCTAAGACTGAAGGTGAGAATGCCAAAAAGAGGAAGAC 444
Query 438 TTGGCTGCTGGATTCTGAGGCACAGGGAGTTGATGAAGCAGGGACACCAGTAGAACAAGT 497
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 445 TTGGCTGCTGGATTCTGAGGCACAGGGAACTGATGAAGCAGGGACACCGGTAGAACAAGT 504
Query 498 GACGTTTCTAAGAGAAGTGGAGGCCTTTTACAAAGAGAATTTCCTGGAATTTAAACCTCC 557
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 505 GGCGTTTCTAAGAGAAGTGGAGGCCTTTTACAAAGAGAGTTTCCTGGAATTTAAACCTCC 564
Query 558 TAAGTTTTATGGACAGCCTTTAAACATTCTCAAGCTTTGGCGAGCAGTCGTTAAACTAGG 617
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 565 TAAGTTTTATGGACAGCCTTTAAACATTCTCAAGCTTTGGCGAGCAGTCGTGAACCTAGG 624
Query 618 TGGCTATGAAGTGGTCACCACAAATAAGCTATGGCGGCAAGTTGGAGAATCCTTCCATCC 677
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 625 TGGCTATGAAGTGGTCACCACAAATAAGCTGTGGCGGCAAGTTGGAGAATCCTTCAATCC 684
Query 678 TCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTTCTACGAGAAGGCACTTTT 737
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 685 TCCCAAGACATGCACAACAGTCTCCTACACATTCCGCAATTTCTATGAGAAGGCACTTTT 744
Query 738 GGAGTACGAAAAGTGTTTAAGGAAAAATGGTGAGCTTAACCTTCCTGGTTCAACATTGCC 797
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 745 GGAGTACGAAAAGTGTTTAAGGAATAATGGTGAGCTTAACCTTCCTGGTTCAACATTGAT 804
Query 798 TCTGTCTTCCAGCCTCGAGAAAGAGGCAAGTAGCCATCAAGGTCCAGGGTCAGGCAGGGC 857
|||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 805 TCTGTCTTCCAGTGTCGAGAAAGAGCCAAGTAGCCATCAAGGTTCAGGGTCAGGCAGGGC 864
Query 858 ACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGCCTTGTTGGATC 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCGCCTTGTTGGATC 924
Query 918 TGGAGAGGGTACTGCGCCAGTTGTTAAGGATAAGGGCTTAAACTCAACCCCAAAGCATAA 977
|||||||| ||||||||| | |||||||||||||||||||| || ||||||||||| ||
Sbjct 925 TGGAGAGGTTACTGCGCCTGCTGTTAAGGATAAGGGCTTAATTTCCACCCCAAAGCACAA 984
Query 978 GAAACTCAAAAGCATTGGGCTGCAAAAACACAAACCACAAACTAGCATGGACCTTTTTGT 1037
||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 985 GAAACTCAAAAGCATTGGGCTGCAAAAACACAAACAACAAACTAGCATGGACCATGTTGT 1044
Query 1038 TTCAAATGAAGCTGACAAACAGTCGGCTGCTGAGGTTGTTGATGTTGGACCCCTTGCTGA 1097
| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1045 TACAAATGAAGCTGACAAACAGTTGGCTGCTGAGGTTGTTGATGTTGGACCCGTTGCTGA 1104
Query 1098 CTGGGTGAAGATAAATGTCAAAGAAACTAAGGATTCCTTCGAGATATTTGCCTTGGTACC 1157
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1105 CTGGGTGAAGATAAATGTCAAAGAATCTAAGGATTCCTTCGAGATATTTGCCTTGGTACC 1164
Query 1158 TGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGCGGGAAAGGTGGTTATAAC 1217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 TGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGCGGGAAAGGTGGTTATAAC 1224
Query 1218 AGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGCATTACACCCTTCAAAAAGATTGTTGA 1277
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1225 AGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGGATTACACCCTTCAAAAAGATTGTTGA 1284
Query 1278 CTTATCAGCAAGAATCGATCCGCTTAACACATCTGCGGTCATGAGCATGCATGGCCGGTT 1337
||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 1285 CTTATCAGCAAGAATTGATCCGCTTCACACATCCGCGGTCATGAGCATGCATGGACGGTT 1344
Query 1338 GTTCATACGAGTTCCGTTTGAGCAGTGATGGATGTCAAGAGTGAGCTGGTCATTTGTTCT 1397
|||||||||||||||||||||||||| |||||| ||||||| ||||||||| ||||||
Sbjct 1345 GTTCATACGAGTTCCGTTTGAGCAGTAATGGATTTCAAGAG--AGCTGGTCAGTTGTTCG 1402
Query 1398 TGGTTTCTTCTAGGAATTCATCATATGTTTCAGAACCAAATTGTTAGGCGGCTGAAGCAG 1457
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1403 TGGTTTCTTCTAGGAATTCAT-AT--GTTTCAGAACCAAATTGTTAGGCGGCTGAAGCAG 1459
Query 1458 TTTTGTAACTGTGATCTGAGTCTGAAGACTGAAGTTAGGGACATGCAAACAAACATTTGA 1517
||||||||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||
Sbjct 1460 TTTTGTAACTGTGATTTGAATCTGAAGACTGAAGTTAGGAACATGCAA-CAAACATTTGA 1518
Query 1518 TCTTACTGTAAGATTTGTCTTTTGTAAAATTTGAGATTAGTAGGAGAAACTGCTCCAAAT 1577
||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1519 TCTTACTGTAATATTTCTCTTTTGTATAATTTGAGATTAGTAGGAGAAACTGCTCCAAA- 1577
Query 1578 CTTAGTTTAAATCCATTTAGGATGCAACCAACAATGATGATT 1619
| | | ||||||||||||||||||||||||||||
Sbjct 1578 ----G---A---C-ATTTAGGATGCAACCAACAATGATGATT 1608
> AT1G76510.3 | Symbols: | ARID/BRIGHT DNA-binding domain-containing
protein | chr1:28708614-28712948 REVERSE LENGTH=1776
Length=1776
Score = 575 bits (311), Expect = 5e-163
Identities = 537/644 (83%), Gaps = 24/644 (4%)
Strand=Plus/Plus
Query 730 GCACTTTTGGAGTACGAAAAGTGTTTAAGGAAAAATGGTGAGCTTAACCTTCCTGGTTCA 789
|||||||||||||| || ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 966 GCACTTTTGGAGTATGAGAAGCATTTAAGGCAAAATGGTGAGCTTAACCTTCCTGGTTCA 1025
Query 790 ACATTGC-C-TCTGTCTTCCA-GCCTCGAGAAA-GAGGCAAGTAGCCATCAAGGTCCAGG 845
| || | | || ||||| || || | || ||| ||||||||||||||||||| | ||||
Sbjct 1026 GC-TT-CTCTTCCGTCTT-CAGGCATTGA-AAAGGAGGCAAGTAGCCATCAAGCTTCAGG 1081
Query 846 GTCAGGCAGGGCACGAAGAGATTCTGCAGCTCGTGCTATGCAAGGTTGGCATGCGCAGCG 905
||||||||| || |||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 1082 GTCAGGCAGAACAAGAAGAGATGCTGCAGCTCGTGCTATGCAAGGTTGGCATTCTCAGCG 1141
Query 906 CCTTGTTGGATCTGGAGAGGGTACTGCGCC-AGTTGTTAAGGATAAGGGCTTAAACTCAA 964
|||| |||||||||| |||| ||||| ||| | |||||||||| || ||||| || ||||
Sbjct 1142 CCTTCTTGGATCTGGGGAGGTTACTGAGCCTA-TTGTTAAGGAGAAAGGCTTGAATTCAA 1200
Query 965 CCCCAAAGCATAAGAAACTCAAAAGCATTGG-GCTGCAAAAACACAAACCA-CAAACTAG 1022
|||||||||| ||||| ||||||| |||||| | |||| ||||| ||| || ||| | |
Sbjct 1201 CCCCAAAGCAAAAGAACCTCAAAAACATTGGTG-TGCAGAAACAAAAAACAACAACCG-G 1258
Query 1023 CATGGACCTT-TTTGTTTCAAATGAAGCTGACAAACAGTCGGCTGCTGAGGTTGTTGATG 1081
|||||||||| ||| ||||| | ||| | || |||||||| |||| |||||| | ||||
Sbjct 1259 CATGGACCTTGTTT-TTTCACACGAATCAGAAAAACAGTCAACTGCCGAGGTTATAGATG 1317
Query 1082 TTGGACCCCTTGCTGACTGGGTGAAGATAAATGTCAAAGAAACTAAGGATTCCTTCGAGA 1141
||||||||| ||| |||||||||||||| ||||||| ||||||||| || | ||| ||||
Sbjct 1318 TTGGACCCCCTGCAGACTGGGTGAAGATCAATGTCAGAGAAACTAAAGACTGCTTTGAGA 1377
Query 1142 TATTTGCCTTGGTACCTGGACTTCTTCGCAAAGAGGTTCGAATTCAATCAGATCCTGC-G 1200
|||||||| |||||||||||||||||||| ||||||| || |||| ||||| ||||| |
Sbjct 1378 TATTTGCCCTGGTACCTGGACTTCTTCGCGAAGAGGTCCGTGTTCAGTCAGACCCTGCAG 1437
Query 1201 GGAAAGG-TGGTTATAACAGGCCAGCCAGAGCAGCTTGACAATCCTTGGGGCATTACACC 1259
|| || | |||||| ||||||| || ||||| ||||||||||||||||| || |||||
Sbjct 1438 GGC--GGCTAGTTATAGCAGGCCAACCTGAGCAACTTGACAATCCTTGGGGAATCACACC 1495
Query 1260 CTTCAAAAAGATTGTTGA-CTTATCA-GCAAGAATCGATCCGCTTAACACATCTGCGGTC 1317
|||||||||| |||| || ||| || ||||||||||||||||| |||| || |||||
Sbjct 1496 CTTCAAAAAGGTTGT-GAACTT-TCCCGCAAGAATCGATCCGCTGCACACGTCAGCGGTT 1553
Query 1318 ATGAGCATGCATGGCCGGTTGTTCATACGAGTTCCGTTTGAGCA 1361
||||| ||||||| || |||| | ||||| || ||||||||
Sbjct 1554 GTGAGCCTGCATGGTCGACTGTTTGTGCGAGTCCCATTTGAGCA 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79969468185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5