BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472331
Length=1154
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20930.1 | Symbols: CDKB2;2 | cyclin-dependent kinase B2;2 |... 1927 0.0
> AT1G20930.1 | Symbols: CDKB2;2 | cyclin-dependent kinase B2;2
| chr1:7292568-7294746 REVERSE LENGTH=1214
Length=1214
Score = 1927 bits (1043), Expect = 0.0
Identities = 1117/1154 (97%), Gaps = 0/1154 (0%)
Strand=Plus/Plus
Query 1 AGAGTTTTCTTAAGAGATTGATAGAGATGGACAACAATGGAGTCAAACCTGCTGTTTCCG 60
|||||| |||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 57 AGAGTTGTCTTGAGAGATTGATAGAGATGGACAACAATGGAGTTAAACCCGCTGTTTCCG 116
Query 61 CCATGGAAGCCTTCGAGAAGCTTGAGAAAGTAGGTGAAGGTACTTACGGGAAAGTTTACA 120
||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 117 CCATGGAAGCCTTTGAAAAGCTTGAGAAAGTAGGTGAAGGGACTTATGGGAAAGTTTACA 176
Query 121 GAGCAAGAGAGAAAGCTACTGGGATGATCGTTGCTTTGAAGAAGACGCGTCTCCATGAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 GAGCAAGAGAGAAAGCTACTGGGATGATCGTTGCTTTGAAGAAGACGCGTCTCCATGAGG 236
Query 181 ATGAAGAAGGTGTTCCTCCCACTACTCTTCGCGAGATCTCTATCTTGCGCATGCTCGCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 ATGAAGAAGGTGTTCCTCCCACTACTCTTCGCGAGATCTCTATCTTGCGTATGCTCGCTC 296
Query 241 GTGATCCTCACATCGTTAGGTTGATGGATGTTAAGCAAGGAATTAACAAAGAAGGAAAAA 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 297 GTGATCCTCACATCGTTAGGTTGATGGATGTTAAGCAAGGAATAAACAAAGAAGGAAAAA 356
Query 301 CTGTACTTTACCTTGTTTTCGAGTATGTTGACACTGATCTCAAGAAATTCATCAGAAGCT 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 CTGTACTTTACCTTGTTTTCGAGTATGTTGATACTGATCTCAAGAAATTCATCAGAAGCT 416
Query 361 TTCGTCAAGCTGGACAGAACATTCCACAGAATACTGTCAAGTGCTTGATGTACCAGTTAT 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 TTCGTCAAGCTGGACAGAACATTCCACAAAATACTGTCAAGTGCTTGATGTACCAGTTAT 476
Query 421 GCAAAGGCATGGCTTTTTGCCATGGTCATGGAGTGTTGCACAGGGATCTTAAGCCGCACA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 477 GCAAAGGCATGGCTTTTTGCCATGGTCATGGAGTGTTGCACAGGGATCTTAAGCCTCACA 536
Query 481 ATCTCTTGATGGACCGGAAGACAATGACGCTCAAAATAGCAGATCTTGGATTAGCTAGAG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 537 ATCTCTTGATGGACCGGAAGACAATGACGCTCAAAATAGCAGATCTTGGATTAGCCAGAG 596
Query 541 CCTTCACTCTCCCAATGAAAAAGTACACACATGAGATTCTAACTCTGTGGTATAGAGCTC 600
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 597 CCTTCACTCTCCCAATGAAAAAGTATACACATGAGATTCTAACTCTATGGTATAGAGCTC 656
Query 601 CGGAAGTTCTTCTTGGAGCAACCCATTACTCAACTGCAGTGGATATGTGGTCTGTTGGCT 660
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 657 CGGAAGTTCTTCTTGGAGCAACCCATTACTCTACTGGAGTGGATATGTGGTCTGTTGGCT 716
Query 661 GCATTTTTGCTGAACTAGTGACCAAGTAAGCAATCTTTGCGGGAGACTCTGAACTCCAAC 720
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 717 GTATTTTTGCTGAACTAGTGACCAAGCAAGCAATCTTTGCGGGAGACTCTGAGCTCCAAC 776
Query 721 AGCTCCTCCGTATTTTCAGGTTGTTGGGAACACCAAACGAAGAAGTGTGGCCTGGAGTAA 780
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 777 AGCTCCTCCGTATATTCAGGTTGTTGGGAACACCAAACGAAGAAGTTTGGCCTGGAGTAA 836
Query 781 GCAAACTCAAGGACTGGCATGAATACCCGCAATGGAAACCGTTGAGTCTCTCCACAGCTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCAAACTCAAGGACTGGCATGAATACCCGCAATGGAAACCGTTGAGTCTCTCCACAGCTG 896
Query 841 TGCCAAACCTCGACAAGGCCGGAGTTGATCTCTTATCTAAAATGCTGGAGTACGAGCCAG 900
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 897 TGCCAAACCTCGACGAGGCTGGACTTGATCTCTTATCTAAAATGCTGGAGTACGAGCCAG 956
Query 901 CAAAACGAATCTCAGCAAAGAAAGCTATGGAGCATCCTTACTTTGATGATTTACCTGACA 960
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 957 CAAAACGAATCTCAGCAAAGAAAGCTATGGAGCATCCTTACTTCGATGATTTGCCTGACA 1016
Query 961 AGTCCTCTCTCTGAGACTCTCTTTATCAACTCTCAGTAGGATATTTTGTTCCATCTCTGT 1020
||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 1017 AGTCCTCTCTCTGAGGCTCTCTTTATAAACTCTCAATAGGATATTTTGTTCTATCTCTGT 1076
Query 1021 CCTTGCTTGTCTCAAGCATTTATCTGCTATCTTAGGATGATCGAAGTTTCAATATTCCCT 1080
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1077 CTTTGCTTGTCTCAAGCATTTATCTGCTATCTTAGGATGATTGAAGTTTCAATATTCCCT 1136
Query 1081 TTTGATTGGGTCTCTATTCCCAATTGTATAACCTTCCAACATTTTTAACAATGAAAGAAT 1140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1137 TTTGATTGGGTCTCTATTCCCAATTGTATAACCTTCCAACATTTTTATCAATGAAAGAAT 1196
Query 1141 ATATCAATTGCTCT 1154
|||||| || ||||
Sbjct 1197 ATATCAGTTTCTCT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56626214760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5