BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472343
Length=1518
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21060.1 | Symbols: | Protein of unknown function, DUF547 |... 2362 0.0
AT1G76620.1 | Symbols: | Protein of unknown function, DUF547 |... 551 8e-156
> AT1G21060.1 | Symbols: | Protein of unknown function, DUF547
| chr1:7371799-7374104 FORWARD LENGTH=1537
Length=1537
Score = 2362 bits (1279), Expect = 0.0
Identities = 1441/1519 (95%), Gaps = 11/1519 (1%)
Strand=Plus/Plus
Query 1 ATGATGGGTCTCTGTTCTCCTTCACCTTCTTCAAACGATTGTTCTTCATCTTCTCCAAGG 60
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGATGGGTCTCTGTTCTCCTTCTCCTTCTTCTCACGATTGTTCTTCATCTTCTCCAAGG 60
Query 61 AACT-GG-G-AGAAGCAGAATGTGATTGTTGCATCACCTTCAAGATTCTCTACCTACAAC 117
|||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AACTCGGAGAAGAAGCAGAATGTGATTGTTGCATCACCTTCAAGATTCTCTACCT---AC 117
Query 118 ACTAAACCGAGTTTATCAATAGAGAAGAGATTACTAACTTACCAGGATTCTAATTGCAAC 177
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 118 ACTAAACCGAGTTTATCAATTGAGAAGAGATTACTTACTTACCAGGATTCTAATTGCAAC 177
Query 178 ATTATGCCAAAGTCTTCAGAAGATTTGAGGAAAGAAATTGCTTCACTTGAGTTTGAGATT 237
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTACGCCAAAGTCTTCAGAAGATTTGAGGAAAGAAATTGCTTCACTTGAGTTTGAGATT 237
Query 238 CTGCGTACAGAACAATATCTGCTCTCTCTTTATAGGACAGCTTTCGATGAACAAGTTTCT 297
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 238 CTGCGTACAGAACAATATCTGCTCTCTCTGTATAGGACAGCTTTCGATGAACAAGTTTCT 297
Query 298 TCTTTTTCTCCCCACACTGAAACAAGCTTAGTGTCTAATCAGTTTTGT-CCCAAATCCGA 356
||||||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||
Sbjct 298 TCTTTTTCTCCTCACACTGAAACAAGCTTAGTTTCTAATCAGTTTT-TACCCAAATCCGA 356
Query 357 GCAATCTGACGTTACCAGTGTGTTCAGCTACCATTATCAAGCTTCTCCAGCCTCTGAATG 416
|||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 GCAATCAGATGTTACCAGTGTGTTCAGCTACCATTATCAAGCTTCTCCGGCCTCTGAATG 416
Query 417 TTCCTCTTCGTGTCCTCCTCGGAGTTTCCAAGCCAGCTTAAAAGCTTTGTCTGCAAGAGA 476
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TTCCTCTTTGTGTCCTCCTCGGAGTTTCCAAGCCAGCTTAAAAGCTTTGTCTGCAAGAGA 476
Query 477 GAAGAGTAGATATGTTGTTTCTGGTAATCACACTACTCTTGGAGATCTTCTGGGTTCTTC 536
|||||||||||||||| | || ||| ||||||||||||||||||||||||||||||| |
Sbjct 477 GAAGAGTAGATATGTT-T--CTAGTAGTCACACTACTCTTGGAGATCTTCTGGGTTCTAC 533
Query 537 GCTTATCGTAGATAACATTGTGAACCCGAGTCGGCTCTCTGAAGATATCTTAAGATGCAT 596
||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||
Sbjct 534 TCTTATCGTAGATAACATTGCGAATCCGAGTAGGCTCTCTGAAGATATCTTAAGATGCAT 593
Query 597 ATGTTCTGTATATTGTACACTCTCCAGCAAAGCCAGAACCAGttcttgtcttcaggcttc 656
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 594 ATGTTCTGTATATTGTACACTCTCCAGCAAAGCCAGAATCAATTCTTGTCTTCAGGCTTC 653
Query 657 ttcttcttcaccttcatctgtctcttcCAAAACCACTTTTGATAGCTGGAACTCGCGTCA 716
| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||
Sbjct 654 TCCTTCTTCACCTTCATCTGTCTCTTCCAAAGCCACTTTTGATAGCTTGAACTCGCGCCA 713
Query 717 CGAGGAACGCAAAGAAGCAAATGTGCCAGGCGTTGTTGTAATAGAATCTCTAGAACTTCA 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 TGAGGAACGCAAAGAAGCAAATGTGCCAGGCGTTGTTGTAATAGAATCTCTAGAACTTCA 773
Query 777 CCTGGATGATGGTAGTTTCAATCACGCTGCTCTTATGCTCCAAAACTTCAGATCACTAGT 836
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 774 CTTGGATGATGGTAGTTTCAATCACGCTGCTGTTATGCTCCAAAACTTCAGATCACTAGT 833
Query 837 TCAAAAGCTTGAGAAGGTTGATCCGAGTAGAATGAAACGCGAAGAGAAGCTCGCATTTTG 896
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 834 TCAAAAACTTGAGAAGGTTGATCCGAGTAGAATGAAACGCGAAGAGAAGCTAGCGTTTTG 893
Query 897 GATAAACATTCACAATGCCCTCACAATGCATGCCTATTTAGCCTACGGAACTCACAACCG 956
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 894 GATAAACATTCACAATGCCCTCACAATGCATGCGTATCTAGCCTACGGAACTCACAACCG 953
Query 957 TGCCAGAAACACCTCGGTTTTAAAGGCAGCTTATGATGTTGGAGGCTATCGTGTAAACCC 1016
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 954 TGCCAGAAACACCTCGGTTTTAAAGGCAGCTTATGATGTTGGAGGCTATAGCGTAAACCC 1013
Query 1017 TTACATAATCCAAAGCTCAATCTTAGGCATTCGTACGCATTTCTCACCACCTTTGTTGCA 1076
|||||| |||||||||||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct 1014 TTACATTATCCAAAGCTCAATCTTAGGCATTCGCCCACATTTTTCACAACCTTTGTTGCA 1073
Query 1077 GACATTGTTTTCACCATCAAGAAAGTCGAAAACTTGTAATGTCAAACACATATACGCCTT 1136
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1074 GACATTGTTTTCGCCATCAAGAAAGTCGAAAACTTGTAATGTCAAACACATTTACGCCTT 1133
Query 1137 GGAATATCCTGAGGCATTGGCTCATTTCGCTCTTTCTTCAGGAGCTTCTACAGATCCTCC 1196
||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||
Sbjct 1134 GGAATATCCCGAGGCATTGGCTCATTTTGCTCTTTCTTCAGGATTTTCTACTGATCCTCC 1193
Query 1197 GGTTCGGGTTTACACAGCGGATTGCATTTTCCGGGATCTAAGAAAATCCAAAGAAGAGTT 1256
||||||||||||||| || |||||| | ||||||||||||||||||||||||||||||||
Sbjct 1194 GGTTCGGGTTTACACGGCAGATTGCGTATTCCGGGATCTAAGAAAATCCAAAGAAGAGTT 1253
Query 1257 TATAAGAAACAATGTTCGTATACACAATGAGACAAAGATATTGTTGCCCAAGATCGTTCA 1316
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1254 TATAAGAAACAATGTTCGTATACACAACGAGACAAAGATATTGTTGCCCAAGATTGTTCA 1313
Query 1317 TTACTATGCTAAAGACATGTCACTGGATGCATCTGCCGTCATGGAAACAACGGTGAAGTG 1376
||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1314 TTACTATGCTAAAGATATGTCACTGGAACCATCTGCCCTCATGGAAACAACGGTGAAGTG 1373
Query 1377 TTTACCGGAATCCACGAAGAGAATAGCTCAGAAATTGTTGAAGAAGAAGTGCAGAAACAT 1436
||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1374 TTTACCGGACTCCACGAAGAGAACAGCTCAGAAATTGTTGAAGAAGAAGAGCAGAAACAT 1433
Query 1437 AGAATATTCACCGGAAAACTCAAGTTTCCGTTATGTAATCATTGAGGAACCACCAACAAG 1496
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1434 TGAATATTCACCGGAAAACTCAAGTTTCCGTTATGTAATCATCCAGGAACCAACAACAAG 1493
Query 1497 AAGACATGATTCTACTATA 1515
|||||||||||||||||||
Sbjct 1494 AAGACATGATTCTACTATA 1512
> AT1G76620.1 | Symbols: | Protein of unknown function, DUF547
| chr1:28756521-28759297 FORWARD LENGTH=2016
Length=2016
Score = 551 bits (298), Expect = 8e-156
Identities = 606/751 (81%), Gaps = 35/751 (5%)
Strand=Plus/Plus
Query 748 GTTGTTGTAATAGAATCTC-TAGAACTTCACCTGGATGATGGTAGTTTCAATCACGCTGC 806
|||||||| ||||| ||| ||| | | || | || |||||||||||| | |||||||
Sbjct 1077 GTTGTTGTCATAGAGGCTCTTAG-AGTACATTTAGACGATGGTAGTTTCGGTTACGCTGC 1135
Query 807 TCTTATGCTCCAAAACTTCAGATCACTAGTTCAAAAGCTTGAGAAGGTTGATCCGAGTAG 866
||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 1136 TCTTATGCTTCAAAACTTCAGATCACTGGTTCAAAATCTTGAGAAAGTTGATCCGAGTAG 1195
Query 867 AATGAAACGCGAAGAGAAGCTCGCATTTTGGATAAACATTCACAATGCCCTCACAATGCA 926
|||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 1196 AATGAAACGCGAAGAGAAGCTCGCGTTTTGGATAAACATTCACAATGCTCTTGTGATGCA 1255
Query 927 TGCCTATTTAGCCTACGGAACTCACAACCGTGCCAGAAACACCTCGGTTTTAAAGGCAGC 986
||| || ||||| || |||||||||||||| || |||||||| |||||||| ||||||||
Sbjct 1256 TGCTTACTTAGCTTATGGAACTCACAACCGCGCAAGAAACACATCGGTTTTGAAGGCAGC 1315
Query 987 TTATGATGTTGGAGGCTATCGTGTAAACCCTTACATAATCCAAAGCTCAATCTTAGGCAT 1046
||||||| ||||||||||| | |||||||||| || |||||||||||||||||||| ||
Sbjct 1316 TTATGATATTGGAGGCTATAGAATAAACCCTTATATCATCCAAAGCTCAATCTTAGGAAT 1375
Query 1047 TC-GTACG-CATTTC---TCACCA-C-C-TTTGTTGCAGACAT-TGTTTTCACCATCAAG 1097
| | || |||| | |||||| | | ||| | || || | ||||||| || |||||
Sbjct 1376 -CAG-ACCTCATTACACATCACCATCACCTTTACTCCAAAC-TCTGTTTTCCCCTTCAAG 1432
Query 1098 AAAGTCGAAAACTTGTAATGTCAAACACATATACGCCTTGGAATATCCTGAGGCATTGGC 1157
||||||||||||||| | ||| | |||||| ||||| |||||||| || ||||| || ||
Sbjct 1433 AAAGTCGAAAACTTGCAGTGTTAGACACATTTACGCATTGGAATACCCCGAGGCTTTAGC 1492
Query 1158 TCATTTCGCTCTTTCTTCAGGAGC-TTCTACAGATCCTCCGGTTCGGGTTTACACAGCGG 1216
|||||||||| |||||||||| || ||| || |||||| | ||||| |||||||| ||||
Sbjct 1493 TCATTTCGCTATTTCTTCAGGGGCATTC-ACTGATCCTACAGTTCGAGTTTACACCGCGG 1551
Query 1217 ATTGCATTTTCCGGGATCTAAGAAAATCCAAAGAAGAGTTTATAAGAAACAATGTTCGTA 1276
|| | || ||||||||||||||| || | ||| |||||| ||| |||| |||||||||
Sbjct 1552 ATAGAATCTTCCGGGATCTAAGACAAGCGAAACAAGAGTATATCAGAAGTAATGTTCGTG 1611
Query 1277 TACACAATGAGACAAAGATATTGTTGCCCAAGATCGTTCATTACTATGCTAAAGACATGT 1336
| |||| | ||||||||| |||||||| |||||| |||| | |||| |||||||||||
Sbjct 1612 TTTACAAAGGGACAAAGATTTTGTTGCCAAAGATCTTTCAACATTATGTTAAAGACATGT 1671
Query 1337 CACTGGATGCATCT--GCCGTCATGGAAACAACGG-TGAAGTGTTTACCGGAA--TCCAC 1391
|| |||||| ||| || |||||||| |||| | || |||||||| ||| | ||
Sbjct 1672 CAATGGATGTGTCTAAGC--TCATGGAAGCAACATCTCAA-TGTTTACCAGAAGATGCAA 1728
Query 1392 GAAGAGAATAGCTCAGAAATTGTT-GAA-GA-A-GAAGTGCA-GAAACATAGAATA-TTC 1445
| | | ||| ||| |||||| ||| ||| || | |||| | | ||| | |||| ||
Sbjct 1729 GGA-A-AATTGCTGAGAAAT-GTTTGAAAGAGAAGAAGAGTAAGAATTTT-GAATGGTT- 1783
Query 1446 ACCGGAAAACTCAAGTTTCCGTTATGTAATC 1476
||||||||| | || ||||| ||||| |||
Sbjct 1784 ACCGGAAAATTTGAGCTTCCGGTATGTTATC 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74899213140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5