BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472346
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-con... 1901 0.0
> AT1G21080.3 | Symbols: | DNAJ heat shock N-terminal domain-containing
protein | chr1:7378538-7382661 REVERSE LENGTH=1873
Length=1873
Score = 1901 bits (1029), Expect = 0.0
Identities = 1190/1260 (94%), Gaps = 41/1260 (3%)
Strand=Plus/Plus
Query 1 AGGAGCGGTTGAGTTGAAATTGGCTGGCGCGTACTCGTCAACG--ACGCGCGTGGAGTGT 58
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 200 AGGAGCGGTTGAGTTGAAATTTGCTGGCGCGTACTCGTCAACGTAACGCGCGTGGAGTGT 259
Query 59 TTTCGTG----------TCCTCCTCCTCCTCACTTAGACAAAGATTTTCTA---TCTC-G 104
||||||| ||||||||||||||||| ||||||| ||||| | ||||
Sbjct 260 TTTCGTGTCCCTCCTCCTCCTCCTCCTCCTCACTAAGACAAATATTTT-GAGGTTCTCTT 318
Query 105 T-TCGTTTGTGTGATCTG--T------C-----G----G-AGATCGTGATCGGATTGATT 145
| |||||||||||||||| | | | | ||||||||||||||||||||
Sbjct 319 TCTCGTTTGTGTGATCTGTCTGACAAGCTAGAAGAATCGTAGATCGTGATCGGATTGATT 378
Query 146 TGAT-A--ATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 202
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGATAATTATGGTGAAGGAGACGGAGTTTTACGATGTCCTCGGCGTTAGCCCCACCGCTA 438
Query 203 CGGAGGCTGAGATTAAGAAGGCTTATTACATCAAGGCACGCCAAGTACATCCAGATAAAA 262
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 439 CGGAGGCTGAGATTAAGAAAGCTTATTACATCAAGGCACGCCAAGTGCATCCAGATAAAA 498
Query 263 ACCCTAATGATCCTCAAGCTGCTCATAATTTCCAGGTGTTGGGAGAGGCCTACCAAGTGT 322
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 499 ACCCTAATGATCCTCAGGCTGCTCATAATTTCCAGGTATTGGGAGAGGCCTACCAAGTGC 558
Query 323 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATGTGGGAAGTCAGGGATTTCAACTG 382
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 559 TAAGTGATCCAGGGCAACGTCAGGCCTATGACACATCTGGGAAGTCAGGGATTTCAACTG 618
Query 383 AGATCATTGATCCCGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTTTTTGAAGAAT 442
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 619 AGATCATTGATCCTGCGGCTATATTTGCTATGCTTTTTGGGAGTGAACTCTTTGAAGAAT 678
Query 443 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 ACATAGGGCAGCTTGCTATGGCATCAATGGCTTCACTTGATATCTTCACTGAAGGGGATC 738
Query 503 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AGATTGATACTAAAAAGATTATAGAAAAAATGAGGGCTGTTCAGAAAGAAAGAGAAGACA 798
Query 563 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 AACTTGCTCAGATTCTTAAGGACCGCCTCAACCTATATATGACGAACAAAGATGAATTTA 858
Query 623 TTAGCAATGGTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 682
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 CTAGCAATGCTGAAGCTGAAGTAACAAGACTCTCAAATGCAGCATACGGGGTGGAAATGT 918
Query 683 TGAACACAATTGGATATATATATGTAAGACAAGCGGCGAAAGAGCTTGGGAAGAAAGCTA 742
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 919 TGAACACAATCGGATATATATATGTCAGACAAGCGGCAAAAGAGCTTGGGAAGAAAGCTA 978
Query 743 TTTATCTCGGTGTACCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 802
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TTTATCTCGGTGTGCCATTCGTAGCTGAATGGTTTAGGACGAAAGGTCACTTCATCAAAT 1038
Query 803 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CCCAAGTAACAGCTGCAACAGGTGCATACGCTTTATTCCAGCTGCAAGAGGAAATGAAAA 1098
Query 863 GGCAGCTAAGTGTTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 922
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GGCAACTAAGTGCTGAAGGCAATTATACCGAGAAGGAACTTGAAGAGTACATGAAGACCC 1158
Query 923 ATAAGAAAGTGATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAGAGCACTA 982
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1159 ATAAGAAAGTAATGATTGATTCTCTGTGGAAGCTCAATGTTGCTGATATCGAAAGCACTA 1218
Query 983 TCTCCCGTGTTTGTGAGCTGGTACTTCAAGATCCCACTGCCAAGAAAGAGGAGCTTCGTG 1042
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1219 TCTCCCGTGTTTGTGAGCAGGTACTTCAAGATCCCACTGCCAAGAGAGAGGAGCTTCGTG 1278
Query 1043 CAAGGGCCAAGGGGTTAAAAACTCTAGGGAA-GATCTTCCAGAAGAACAAGATAGCCAGT 1101
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1279 CAAGGGCCAAGGGGTTAAAAACTCT-GGGAAAGATCTTCCAGAAGAACAAGATAGCCAGT 1337
Query 1102 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGACATGGTCAAGAACAT 1161
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1338 GAGAGTGATCCTTTAGTAAGAGCCGAACTTCACAAACTAAACGGAAATGGTCAAGAACAT 1397
Query 1162 GATCATGCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACATTTGGACCTCAG 1221
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1398 GATCATTCATCCACATCACCAAAATCTGATGAAGCATCTCGCTCTACCGTTGGACCTCAG 1457
Score = 377 bits (204), Expect = 1e-103
Identities = 288/324 (89%), Gaps = 23/324 (7%)
Strand=Plus/Plus
Query 1222 GAACCGCAAAGCCCTTATGTGGAAACACCGAAACTTGGAGAAGAGCAATTCAACCAATAC 1281
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | |||
Sbjct 1485 GAACCGCAAAGCCCTTATGTGGAAGCACCGAAACTTGGAGAAGAGCAAATCAACTATTAC 1544
Query 1282 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TTCCCAAGGCCTGCGCCGCCTCCAGGAGCACAGAGACACTCTTAAACTGGCAATGGATTG 1604
Query 1342 A-T------T---C---------A--TTTTCCCTTTTGTGCTATATAATATAAGTCTTTA 1380
| | | | | |||||| |||| ||||||||||||||||||||||
Sbjct 1605 ATTCACAGATGAACGAAAAGGTTATTTTTTCCTTTTTTTGCTATATAATATAAGTCTTTA 1664
Query 1381 TGCATA-TTGATATATTTGCAGGCGGTGGTATTACAATTATGTAATTTTTATTATTTTTA 1439
|||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 1665 TGCATATTTGATATATTTGCAGGCGTTGGTATTACCATTATGTAATTTTTATTATTGTTA 1724
Query 1440 GAAGAAGAAATTATTGGATCATTGGaaaaaaaCACATGAAATCTCATCTTAGACAATGTA 1499
|||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||
Sbjct 1725 GAAGAAGAAATTATTGGATC-TTTGAAAAAAGCACATGTTATCTCATCTTAGACAATGTA 1783
Query 1500 TAATGTTTTTATTCTATTTATATA 1523
||||||||||||||||||||||||
Sbjct 1784 TAATGTTTTTATTCTATTTATATA 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5