BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472357
Length=628
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21190.1 | Symbols: | Small nuclear ribonucleoprotein famil... 990 0.0
AT1G76860.1 | Symbols: | Small nuclear ribonucleoprotein famil... 359 2e-98
> AT1G21190.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:7419678-7420903 REVERSE LENGTH=652
Length=652
Score = 990 bits (536), Expect = 0.0
Identities = 600/630 (95%), Gaps = 8/630 (1%)
Strand=Plus/Plus
Query 1 CAATTTCAAAACCCTCGGAGAAGTTTTAATCAGAAAAATGTCCGTCGAGGAAGACGCCAC 60
||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||
Sbjct 12 CAATTTCAAAACCCTCGGAGAAGTTATAATCAG-AAAATGTCAGTCGAGGAAGACGCCAC 70
Query 61 CGTTAGAGAGCCACTCGATCTGATTCGGCTGAGTATCGAAGAGAGGATCTATGTCAAGCT 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 71 CGTTAGAGAGCCACTCGATCTGATTCGGTTGAGTATCGAAGAGAGGATCTATGTCAAGCT 130
Query 121 CCGATCAGACCGTGAACTCCGCGGCAAGCTTCACGCTTTTGATCAGCATTTGAATATGAT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CCGATCTGACCGTGAACTCCGCGGCAAGCTTCACGCTTTTGATCAGCATTTGAATATGAT 190
Query 181 TCTGGGTGATGTTGAAGAGGTTATTACGACTGTAGAAATCGACGACGAGACATACGAAGA 240
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 191 TCTGGGTGATGTTGAAGAGGTTATTACGACTATAGAAATCGACGACGAGACATATGAAGA 250
Query 241 GATTGTTCGGACAACTAAGCGAACGGTTCCGTTTCTATTCGTGAGAGGAGATGGAGTGAT 300
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 251 GATTGTTCGGACAACGAAGCGAACGGTACCGTTTCTATTCGTGAGAGGAGATGGAGTGAT 310
Query 301 ATTGGTGTCACCGCCTTTGAGGACGACGACCTAAATGTTCTTGTGTACTGGGATCTGTGT 360
||||||||||||||||||||||||||| | |||||||||||||||||||||||| | ||
Sbjct 311 ATTGGTGTCACCGCCTTTGAGGACGAC--C-TAAATGTTCTTGTGTACTGGGATCGGAGT 367
Query 361 TAACAAATCTGGAGCTGAGTAAAACCACTTTTTTCTGATTACTTGGCTTTTGAATT-GTA 419
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 368 TAACAAATCTGGCGCTGAGTAAAAGCACTTTTTTCTGATTACTTGGCTTTTGAATTTGTA 427
Query 420 ATTGTGTGGTATGTTTTTCTTTGTTGTCAAACATTGAAACCGAATGTAGCTTTCGAATTC 479
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 428 ATTGTGTGGTATGTTTTTCTTTGTTGTCAAACATTGAAACCGAATGTAGCATTCGAAT-C 486
Query 480 T-GGTTATGGGCTGCTTCGTTATAGTAGAAGCAGCGTAACATGCTTCGTATTGTGACTTT 538
| ||| ||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||
Sbjct 487 TTGGTAATGGG-TGCCTCGTTATAGTAGAATCAGTGTAACATACTTCGTATTGTGACTTT 545
Query 539 CTTACCGTTTATGATCGGATTTAGTTTCATTTTCTGGTTTGGTGTAGTTTTCTCTAAAGA 598
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 546 CTTACCGTTTACGATCGGATTTAGTTTCGTTTTCTGGTTTGGTGTAGTTTTCTCTAAAGA 605
Query 599 TTTGTATTCTTTCTCAAACTCATTGATTTC 628
||||||| ||| ||||||||||||||||||
Sbjct 606 TTTGTATACTTCCTCAAACTCATTGATTTC 635
> AT1G76860.1 | Symbols: | Small nuclear ribonucleoprotein family
protein | chr1:28854414-28855750 REVERSE LENGTH=590
Length=590
Score = 359 bits (194), Expect = 2e-98
Identities = 256/287 (89%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 38 ATGTCCGTCGAGGAAGACGCCACCGTTAGAGAGCCACTCGATCTGATTCGGCTGAGTATC 97
||||||| ||||||||| |||||||| || |||||||| ||||||||| |||||||| ||
Sbjct 114 ATGTCCGGCGAGGAAGAAGCCACCGTGAGGGAGCCACTAGATCTGATTAGGCTGAGTCTC 173
Query 98 GAAGAGAGGATCTATGTCAAGCTCCGATCAGACCGTGAACTCCGCGGCAAGCTTCACGCT 157
|| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 174 GACGAGAGAATCTATGTCAAGCTCCGGTCAGACCGCGAACTTCGCGGCAAGCTTCACGCG 233
Query 158 TTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAGGTTATTACGACTGTAGAA 217
||||||||||||||||||||||||||||||||||||||||| ||| || || ||||||
Sbjct 234 TTTGATCAGCATTTGAATATGATTCTGGGTGATGTTGAAGAAACTATCACTACAGTAGAA 293
Query 218 ATCGACGACGAGACATACGAAGAGATTGTTCGGACAACTAAGCGAACGGTTCCGTTTCTA 277
||||| ||||||||||| ||||||||||||||||| || ||||| ||| || |||||||
Sbjct 294 ATCGATGACGAGACATATGAAGAGATTGTTCGGACTACAAAGCGGACGATTGAGTTTCTA 353
Query 278 TTCGTGAGAGGAGATGGAGTGATATTGGTGTCACCGCCTTTGAGGAC 324
|||||||||||||||||||||||||||||||| || || |||||||
Sbjct 354 TTCGTGAGAGGAGATGGAGTGATATTGGTGTCTCCACCGCTGAGGAC 400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30291190641
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5