BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472358
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21200.1 | Symbols: | sequence-specific DNA binding transcr... 2614 0.0
AT1G76870.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 468 9e-131
> AT1G21200.1 | Symbols: | sequence-specific DNA binding transcription
factors | chr1:7421217-7423143 FORWARD LENGTH=1736
Length=1736
Score = 2614 bits (1415), Expect = 0.0
Identities = 1620/1717 (94%), Gaps = 22/1717 (1%)
Strand=Plus/Plus
Query 1 AGAGAAACCTGAGCAAGCTGGCCGGAGAAGACGAAAGCAAACTTTTTTCTGATG-AATTA 59
||||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 7 AGAGAAACCTGAGGAAGCTGACCGGAGAAGACGAAAGCAAACTTTTTTCTGAAGAAATT- 65
Query 60 GGAAGAAAAAATGGATGGGAATTTTCCACAAGGAGGTGTAGTTCGTGGTGGAGCTACTTC 119
|| |||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 66 TGATCCAAAAATGGATGGGAATTTTCCACAAGGAGGTGTAGTTCGTAGTGGAGCTTCATC 125
Query 120 TTATGGTGGATTTGATTTACAAGGTTCTATGAGAGTTCAACACCAAGATTCCATGAATCA 179
|||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 126 TTATGGAGGATTTGATTTACAAGGTTCTATGAGAGTTCATCACCAAGACTCCATGAATCA 185
Query 180 GCAGCATCGACACAATCCTAATTCTCGACCACTTCATGAAGGTCTTCCCTTTACTATGGT 239
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 186 GCAGCATCGACACAATCCTAATTCTAGACCACTTCATGAAGGTCTTCCCTTTACTATGGT 245
Query 240 TACAGGTCAAACCTGTGATCATCATCAG----AG--CATGTCTATGTCTGAGCAACAGAA 293
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 246 TACAGGTCAAACCTGTGATCATCATCAGAATCAGAACATGTCTATGTCTGAGCAACAGAA 305
Query 294 ACCTGAAAGAGAGAAGAATCCAGTGAGTGATGATGATGAACCAAGTTTCACAGAGGAAGG 353
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGCTGAAAGAGAGAAGAATTCAGTGAGTGATGATGATGAACCAAGTTTCACAGAGGAAGG 365
Query 354 TGGTGAT-G-G-TCATAATGATGCTAATAAATCAACTAAAGGATCTCCATGGCAACGAGT 410
||||||| | | ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 366 TGGTGATGGTGTTCATAATGAAGCTAATAGATCAACTAAAGGATCTCCATGGCAACGAGT 425
Query 411 GAAATGGACTGATAAGATGGTGAAGTTGTTGATAACCGCTGTTTCTTATATAGGCGATGA 470
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 426 GAAATGGACTGATAAGATGGTGAAGTTGTTGATTACTGCTGTTTCTTATATAGGAGATGA 485
Query 471 TTCGACTATGGATAGTGGTAGTAGAAGGAAGTTTGCTGTTTTGCAGAAGAAAGGGAAGTG 530
||||| ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 486 TTCGAGTATAGATAGTAGTAGTAGAAGAAAGTTTGCTGTTTTGCAGAAGAAAGGGAAGTG 545
Query 531 GAAATCTGTTTCTAAAGTTATGGCTGAGAGAGGTTATCATGTTTCGCCGCAGCAATGCGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 546 GAAATCTGTTTCTAAAGTTATGGCTGAGAGAGGTTATCATGTTTCGCCGCAGCAATGTGA 605
Query 591 GGATAAGTTTAATGATTTGAATAAGCGGTATAAGAAGCTTAACGATATGCTTGGTAGGGG 650
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 606 GGATAAGTTCAATGATTTGAATAAACGGTATAAGAAGCTTAATGATATGCTTGGTAGAGG 665
Query 651 AACTTCTTGTCAAGTTGTTGAGAATCCTGCGCTTTTGGATTCGATTGGTTATTTGAATGA 710
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 666 AACATCTTGTCAAGTTGTTGAGAATCCTGCGCTTTTGGATTCGATTGGTTACTTGAATGA 725
Query 711 TAAAGAGAAGGATGATGTTAGGAAAATCATGAGTTCCAAACATCTTTTCTATGAAGAGAT 770
|||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 726 TAAAGAGAAGGATGATGTTAGGAAGATTATGAGTTCTAAACATCTTTTTTATGAAGAGAT 785
Query 771 GTGTTCGTACCATAATGGGAACAGATTGCATTTGCCTCATGATCTTGCTTTGCAGCGTTC 830
||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 786 GTGTTCGTATCATAATGGGAATAGGTTGCATTTGCCTCATGACCTTGCTTTGCAGCGTTC 845
Query 831 GTTACAGTTGGCGCTTAGAAACAGAGATGATCATGATAATGATGATTCTAGGAAACATCA 890
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 846 GTTACAGTTGGCGCTTAGAAGCAGAGATGATCATGATAATGATGATTCTAGGAAACATCA 905
Query 891 Aatggaggatcttgatgatgaggatcatgatggggatggtgatgaacatgatgagtatga 950
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 906 AATGGAGGATCTTGATGATGAGGATCATGATGGTGATGGTGATGAACATGATGAGTATGA 965
Query 951 ggagCAACATTATTCATATGGAGATTGTAGGGGAAATCATTATGGAGGTGGTGGTGGTCC 1010
||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 966 GGAGCAACATTATGCGTATGGAGATTGTAGGGTAAATCATTATGGAGGTGGTGGTGGTCC 1025
Query 1011 TTTGAAGAAGATTAGACAAAGCCATAGCCATGAAGATGCAGACCATCCGAGTCATGTGAA 1070
|||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||||||||
Sbjct 1026 TTTGAAGAAGATAAGACCAAGCCTTAGCCATGAAGATGGAGATCATCCGAGTCATGTGAA 1085
Query 1071 TTCTCTGGAGTGTAATAAAGTCTCTTTACCTCAAATACCGTTTTCTCAAGCTGATGTGAA 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 TTCTCTGGAGTGTAATAAAGTCTCTTTACCTCAAATACCGTTTTCTCAAGCTGATGTGAA 1145
Query 1131 TCAAGGTGGGGCAGAGAGTGGAAGAGCAGCTTCGGTGCAGAAGCAGTGGATTGAGTCGCG 1190
|||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1146 TCAAGGTGGGGCGGAGAGTGGAAGAGCAGGTTCGGTGCAGAAGCAGTGGATGGAGTCGCG 1205
Query 1191 GACTCTGCAGTTAGAAGAGCAGAAGCTTCAGATCCAAGTTGAATTGCTGGAATTGGAGAA 1250
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GACTCTCCAGCTAGAAGAGCAGAAGCTTCAGATCCAAGTTGAATTGCTGGAATTGGAGAA 1265
Query 1251 ACAGAGATTCAGGTGGCAGAGGTTTAGTAAGAAAAGGGATCAAGAACTCGAGAGAATGAG 1310
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1266 ACAGAGATTCAGGTGGCAGAGGTTTAGCAAGAAAAGGGATCAAGAACTCGAGAGAATGAG 1325
Query 1311 GATGGAGAATGAAAGGATGAAACTTGAGAATGATCGGATGGGATTGGAGTTGAAACAAAG 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 AATGGAGAATGAAAGGATGAAACTTGAGAATGATCGGATGGGATTGGAGTTGAAACAAAG 1385
Query 1371 AGAATTGGGTGTTGAATTATAACGGAATTGGCTTCACTTCTCTTGATTGGTATATACCTT 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1386 GGAATTGGGTGTTGAATTATAACGGAATTGGCTTCACTTCTCTTGATTGGTATATAGCTT 1445
Query 1431 CGCTAAATGAAGTCTCATTTTCTGCTTTTGTAAGCTTGCTTTGTTTGGAATGATCTCGAG 1490
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1446 TGCTAAATGAAGTCTCATTTTCTGCTTTTGTAAGCTTGCTTTGATTGGAATGATCTCGAG 1505
Query 1491 ACTTTGATGTGAGAGATCATTGTGGTTGCATCAGTGATGAATTTTGAGAATGTAGTGAGA 1550
|||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 1506 ACTTTGATGTGAGAGATCTTTGTGGTTGCATCAGTGATGAAGTTTGTGAATGTAGTGAGA 1565
Query 1551 AAGGAGTGGTTAATATAAGAAGCTCTCTAAGGTTTGTTTTAACTCAACCTCTCAGTAATC 1610
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||
Sbjct 1566 AAGGAGTGGTTAATATAAGCAGCTCTCTAAGGTTTGTTTTAACTCTACTTCTCAGTACTC 1625
Query 1611 AACCGGTTAAGGCTATTTTCATCATT-TGCTGTATTATTTTCAACATCTTAATCCAAT-T 1668
||| |||||||| ||||||||| || ||||||||| ||||| ||||||||||||||| |
Sbjct 1626 AACTGGTTAAGGTTATTTTCATTGTTCTGCTGTATTGTTTTCGACATCTTAATCCAATGT 1685
Query 1669 -T------T--CTCATTATTAAGCCAGTTTGAGAATG 1696
| | |||||| |||||||||||||||||||
Sbjct 1686 GTAACAAATATCTCATTGTTAAGCCAGTTTGAGAATG 1722
> AT1G76870.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: sequence-specific DNA binding transcription factors
(TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76
species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi -
14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source:
NCBI BLink). | chr1:28857250-28858407 FORWARD LENGTH=1158
Length=1158
Score = 468 bits (253), Expect = 9e-131
Identities = 442/530 (83%), Gaps = 25/530 (5%)
Strand=Plus/Plus
Query 394 TCTCCATGGCAACGAGTGAAATGGACT-GATAAGATGGTGAAGTTGTTGATAACCGCTGT 452
||||| |||||||| |||||||||| | ||||||||||||||| | ||||||| ||| |
Sbjct 241 TCTCCTTGGCAACGTGTGAAATGGA-TGGATAAGATGGTGAAGCTAATGATAACTGCTCT 299
Query 453 TTCTTATATAGGCGATGATTCGACTATGGATAGTGGTAGTAGAAGGAAGTTTGCTGTTTT 512
||||||||| || ||| |||| ||| | | | | | || ||| ||||| |||||
Sbjct 300 TTCTTATAT---CGGTGA--AGACTCTGG-T--T-CT-G-ATAA-GAAATTTGCAGTTTT 347
Query 513 GCAGAAGAAAGGGAAGTGGAAATCTGTTTCTAAAGTTATGGCTGAGAGAGGTTATCATGT 572
|||||||||||| ||||||| ||| ||||||||||| |||| ||| ||||||||||||||
Sbjct 348 GCAGAAGAAAGGTAAGTGGAGATCAGTTTCTAAAGTCATGGATGAAAGAGGTTATCATGT 407
Query 573 TTCGCCGCAGCAATGCGAGGATAAGTTTAATGAT-TTGAATAAGCGGTATAAGAAGCTTA 631
||||||||||||||| || ||||||||||||||| || ||||||||||||||||||||||
Sbjct 408 TTCGCCGCAGCAATGTGAAGATAAGTTTAATGATCTT-AATAAGCGGTATAAGAAGCTTA 466
Query 632 ACGATATGCTTGGTAGGGGAACTTCTTGTCAAGTTGTTGAGAATCCTGCGCTTTTGGATT 691
| || ||||||||||| |||||||||||| | ||||||||||||||| | || ||||||
Sbjct 467 ATGAGATGCTTGGTAGAGGAACTTCTTGTGAGGTTGTTGAGAATCCTTCACTCTTGGATA 526
Query 692 CGATTGGTTATTTGAATGATAAAGAGAAGGATGATGTTAGGAAAATCATGAGTTCCAAAC 751
||||| ||| |||||||| |||||||| ||||| ||||||| ||||||||| || ||||
Sbjct 527 AGATTGATTACTTGAATGAGAAAGAGAAAGATGAAGTTAGGAGAATCATGAGCTCTAAAC 586
Query 752 ATCTTTTCTATGAAGAGATGTGTTCGTACCATAATGGGAACAGATTGCATTTGCCTCATG 811
||||||||||||||||||||||||| || ||||| || ||||||||||||||||||||||
Sbjct 587 ATCTTTTCTATGAAGAGATGTGTTCTTATCATAACGGAAACAGATTGCATTTGCCTCATG 646
Query 812 ATCTTGCTTTGCAGCG-T-TCGTT-ACA-G-TTGGCGCTTAGAAACAGAGATGATCATGA 866
| | ||| | ||| | | || || || | || ||||| ||| | | |||||||||||
Sbjct 647 ACCCTGCGGTACAGAGATCTC-TTCACTTGATTA-CGCTTGGAAGCCGTGATGATCATGA 704
Query 867 TAATGATGATTC-TAGGAAACATCAAatggaggatcttgatgatgaggat 915
||||||||| | | ||||||| |||| || |||||||||||||| |||
Sbjct 705 TAATGATGAA-CATGGGAAACACCAAAACGAAGATCTTGATGATGATGAT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5