BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472365
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21320.1 | Symbols: | nucleotide binding;nucleic acid bindi... 1356 0.0
AT1G21326.1 | Symbols: | VQ motif-containing protein | chr1:74... 785 0.0
AT1G76940.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 276 5e-73
> AT1G21320.1 | Symbols: | nucleotide binding;nucleic acid binding
| chr1:7462834-7465334 REVERSE LENGTH=1400
Length=1400
Score = 1356 bits (734), Expect = 0.0
Identities = 930/1021 (91%), Gaps = 28/1021 (3%)
Strand=Plus/Plus
Query 1 AATCATATATATACAAGTACTTCCCCTAatcatcacataatcattgttcttcactaaaat 60
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 22 AATTATATATATACAAGTACTTCCCCTAATCATCACATAATCATTGTTCTTCACTAAATT 81
Query 61 catcatcacacacacatacacatatatatataCTATTCATCTCA-AA-GTGGATTCTATG 118
|||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 82 CATCATCACACA----TACACATATACATATACTATTCATCTCATAAAGTGGATTCTATG 137
Query 119 GATAATAGATCGCCAAGATCAAGAGGAATCTTGGGTCCGAGACCAACACCATTGAAAGTC 178
|||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||||||
Sbjct 138 GATAATAGATCGCCAAGATCAAGAGGAAACATGGGTCCGAAACCAACACCACTGAAAGTC 197
Query 179 CGTGGAGATTCGCACAAGATCATCAAGAAGCCACCACT-GC-C-GCCTCAGCCGCAACCA 235
|||||||||||||||||||| ||||||||||||||||| || | ||| || |||||||||
Sbjct 198 CGTGGAGATTCGCACAAGATTATCAAGAAGCCACCACTAGCGCCGCCACACCCGCAACCA 257
Query 236 CAACCACCACAAATCCATCAGCAAGAACCGTCGCAACCGCAGCCTCCACGTGGTCCCGTT 295
||||||||||||| |||||||||||||||||||||| | | ||| |||| |||||||||
Sbjct 258 CAACCACCACAAACCCATCAGCAAGAACCGTCGCAATCTCGGCCCCCACCTGGTCCCGTG 317
Query 296 ATCATATACACCGTATCTCCCAAGA-TTATCCATACACACCCTAATAACTTCATGACATT 354
| ||||||||| ||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 318 AACATATACACAGTAACTCCCA-GAATTATCCATACACACCCTAATAACTTCATGACATT 376
Query 355 GGTTCAACGTCTCACAGGTAAAACCTCTACCTCCACAACATCATCCTCCTCTTCTTCGTC 414
||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||
Sbjct 377 GGTCCAACGTCTCACAGGTCAAACCTCTACCTCCACAACATCATCCTCCTCCTCTTCATC 436
Query 415 TACGTCAGCACCAAAAGACAAGTCAACAACGATTGATACATCTCATGGTTTGATATCCCC 474
||||| | ||||||||||| |||||||| | |||||||||||||||| |||||||| ||
Sbjct 437 CACGTCGGAACCAAAAGACACGTCAACAATGGTTGATACATCTCATGGGTTGATATCTCC 496
Query 475 GGCGGCTCGGTTTGCTGTTACAGAGAATGCTAATA-CATCAAACGAACTAGGGACATTTG 533
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 497 GGCGGCTCGGTTTGCTGTTACAGAGAAGGCTAATATC-TCAAACGAACTAGGGACATTTG 555
Query 534 TGGGAGGCGTAGGGGCTATGGATCAATATTAT--T-ATCATCATCAACAACAAC-A--TC 587
| ||||||| |||| ||||||||||||||||| | ||||||||||| |||||| | ||
Sbjct 556 TTGGAGGCGAAGGGACTATGGATCAATATTATCATCATCATCATCAAGAACAACCACATC 615
Query 588 AAAATCGAGGGTTCGAAAGGCCAAGTTTTCACCATGCTGGGATTTTATCGCCGGGACCT- 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 616 AAAATCGAGGGTTCGAGCGGCCAAGTTTTCACCATGCTGGGATTTTATCGCCGGGACCTT 675
Query 647 ACTTCTCTGCCGTCGATATCACCGGACTTCTTTTCCACGGTTGGACCAACCGATCCACAA 706
| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 A-TTCTCTGCCGTCGGTATCACCGGACTTCTTTTCCACTATTGGACCAACCGATCCACAA 734
Query 707 GAAGGTACACCATATGTGATGCCTTCAGGCGGTATGCACAGTTATTTATCACGGGATGAG 766
||||||||||||||| |||| |||||||| | |||||||||||||||||||| |||||||
Sbjct 735 GAAGGTACACCATATTTGATTCCTTCAGGTGATATGCACAGTTATTTATCACAGGATGAG 794
Query 767 GATCGAGGTATCCCCCATTCAGTAAAGGATACCAGAACTATTGGTTCAGCTTATGACCAG 826
|||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |
Sbjct 795 GATCGAGGTATCCCCCATTCAGTAAAGGATACTAGAAGTATTGGATCAGCTTATGACC-G 853
Query 827 -TACCTG-A-A-TAAT-CAAACGCCTTCTGTGCCATCTGAAGAAGCTGGGCCATTTGATG 881
|||||| | | || | |||||| || ||||||||||||||||||||| |||||| |||
Sbjct 854 CTACCTGCAGAGTA-TGCAAACGTTTTTTGTGCCATCTGAAGAAGCTGGTCCATTTAATG 912
Query 882 GTGTTGGCATGGGACGACAAGGAGGTAACAACATTATGCGTGGTCCGCCCATGGGTGAGC 941
|||||||||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||
Sbjct 913 GTGTTGGCATGGTACGACAAGGAGGTTCCAACATGATGCCTGGTCCGTCCATGGGTGAGC 972
Query 942 TCATGGCTGGGCGTGGTGGGAGTTTGCCTTCAGATTTCAGGCCAAATGGTCGGGCTATGG 1001
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 973 TCATGGCTGGGTGTGGTGGGAGTTTGCCTTCAGATTTCAGGCCAAATGGTCGGGATATGG 1032
Query 1002 G 1002
|
Sbjct 1033 G 1033
Score = 418 bits (226), Expect = 7e-116
Identities = 318/357 (89%), Gaps = 27/357 (8%)
Strand=Plus/Plus
Query 1001 GGCCGGGAACCAC-T--TCT---TCCAGATGTATCCAACACTCTATATGTTGAAGGACTT 1054
||||||||||||| | ||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1065 GGCCGGGAACCACATCCTCTACCTCCAGATGTATCCAACACTCTGTATGTTGAAGGACTT 1124
Query 1055 CCTTCTAATTGCTCAAGAAGGGAAAATGTTTTAAGCTGTTCACTGTCCTTAACTGTATTT 1114
|||||||||||||||||||||| || | | | | | || | | |||||
Sbjct 1125 CCTTCTAATTGCTCAAGAAGGG--AA-G---T-A-----T--C---CC---A-TATATTT 1163
Query 1115 CGGCCTTTTGTGGGATATAGAGAAGTAAGACTTGTGACCAAAGATTCAAAACATAGGAGT 1174
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1164 CGGCCTTTTGTGGGATATAGAGAAGTAAGACTTGTGACCCAAGATTCAAAACACAGGAGT 1223
Query 1175 GGAGATCCTATTGTTCTTTGTTTTGTTGATTTTTAAAACCCTGCCTGTGCAGCAACTGCT 1234
|||||||||| |||||| ||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1224 GGAGATCCTACTGTTCTGTGTTTTGTTGATTTTGAAAACTCTGCCTGTGCAGCAACTGCT 1283
Query 1235 CTGAGCGCTTTGCAAGGCTATCGAATGGATGAAGACGAATCCGATTCCAAGATTTTGCGG 1294
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1284 CTGAGCGCTTTGCAAGACTATCGAATGGATGAAGACGAACCCGATTCCAAGATTTTGCGG 1343
Query 1295 CTCCAATTTTCCAGAAACCCAGGTCCAAGACCAGGACAACGTGGAGGAAGAAGGTGA 1351
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1344 CTCCAATTTTTCAGAAACCCAGGTCCAAGACCAGGACAGCGTGGAGGAAGAAGGTGA 1400
> AT1G21326.1 | Symbols: | VQ motif-containing protein | chr1:7469002-7469721
REVERSE LENGTH=720
Length=720
Score = 785 bits (425), Expect = 0.0
Identities = 555/614 (90%), Gaps = 23/614 (4%)
Strand=Plus/Plus
Query 116 ATGGATAATAGATCGCCAAGATCAAGAGGAATCTTGGGTCCGAGACCAACACCATTGAAA 175
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGATAATAGATCGCCAAGATCAAGAGGAATCTTGGGTCCGAGACCAATACCATTGAAA 60
Query 176 GTCCGTGGAGATTCGCACAAGATCATCAAGAAGCCACCACT-GC-C-GCCTCAGCCGCAA 232
||||||||||||||||||||||||||||||||||||||||| || | ||| || ||||||
Sbjct 61 GTCCGTGGAGATTCGCACAAGATCATCAAGAAGCCACCACTAGCGCCGCCACACCCGCAA 120
Query 233 CCACAACCACCACAAATCCATCAGCAAGAACCGTCGCAACCGCAGCCTCCACGTGGTCCC 292
|||||||||||||||| |||||||||||||||||| ||| ||| ||| |||| |||||||
Sbjct 121 CCACAACCACCACAAACCCATCAGCAAGAACCGTCACAATCGCGGCCGCCACCTGGTCCC 180
Query 293 GTTATCATATACACCGTATCTCCCAAGATTATCCATACACACCCTAATAACTTCATGACA 352
|| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATTATATACACAGTATCTCCCAGGATTATCCATACACACCCTAATAACTTCATGACA 240
Query 353 TTGGTTCAACGTCTCACAGGTAAAACCTCTACCTCCACAACATCATCCTCCTCTTCTTCG 412
||||| ||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 241 TTGGTCCAACGTCTCACAGGTAAAACCTCCACCTCCACAACATCCTCCTCCTATTCTTCA 300
Query 413 TCTACGTCAGCACCAAAAGACAAGTCAACAACGATTGATACATCTCATGGTTTGATATCC 472
||||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||
Sbjct 301 TCTACGTCAGCACCAAAAGACGCGTCAACAATGGTTGATACATCTCATGGGTTGATATCT 360
Query 473 CCGGCGGCTCGGTTTGCTGTTACAGAGAATGCTAATA-CATCAAACGAACTAGGGACATT 531
||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 361 CCGGCGGCTCGGTTTGCTGTTACAGAGAAGGCTAATATC-TCAAACGAACTAGGGACATT 419
Query 532 TGTGGGAGGCGTAGGGGCTATGGATCAATATTAT--T-ATCATCATCA--A-CA--A-CA 582
||| ||||||| |||| ||||||||||||||||| | |||||||||| | || | ||
Sbjct 420 TGTTGGAGGCGAAGGGACTATGGATCAATATTATCATTATCATCATCATCATCATCATCA 479
Query 583 A---CA------TCAAAATCGAGGGTTCGAAAGGCCAAGTTTTCACCATGCTGGGATTTT 633
| || |||||||| ||||||||| |||||||||| |||||||||||||||||
Sbjct 480 AGAACAACAACATCAAAATCAAGGGTTCGAGCGGCCAAGTTTCCACCATGCTGGGATTTT 539
Query 634 ATCGCCGGGACCTACTTCTCTGCCGTCGATATCACCGGACTTCTTTTCCACGGTTGGACC 693
|||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 540 ATCGCCGGGACCTAATTCTCTGCCGTCGGTATCACCGGACTTCTTTTCCACTATTGGACC 599
Query 694 AACCGATCCACAAG 707
||||||||||||||
Sbjct 600 AACCGATCCACAAG 613
> AT1G76940.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:28902428-28904311 REVERSE LENGTH=1207
Length=1207
Score = 276 bits (149), Expect = 5e-73
Identities = 281/339 (83%), Gaps = 31/339 (9%)
Strand=Plus/Plus
Query 1016 CTTCCAGATGTATCCAACACTCTATATGTTGAAGGACTTCCTTCTAATTGCTCAAGAAGG 1075
||| |||||| |||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 618 CTT-CAGATGCATCCAACACTTTATATGTTGAAGGACTTCCTTCTAATTGCTCTAGGAGG 676
Query 1076 GAAAATGTTTTAAGCTGTTCACTGTCCTTAACTGTATTTCGGCCTTTTGTGGGATATAGA 1135
||| || | ||| || | | | |||||| |||||||| ||||| |||
Sbjct 677 GAA---GT---A-GCT---CA-T------A--T--ATTTCGACCTTTTGTAGGATACAGA 715
Query 1136 GAAGTAAGACTTGTGACCAAAGATTCAAAACATAGGAGTGGAGATCCTATTGTTCTTTGT 1195
||||| ||||||||||||||||| || |||||| ||| ||||||||||||||||||||
Sbjct 716 GAAGTGAGACTTGTGACCAAAGACTCCAAACATCGGAACGGAGATCCTATTGTTCTTTGC 775
Query 1196 TTTGTTGATTTTTA-AAACCCTGCCTGTGCAGCAACTGCTCTGAGCGCTTTGCAAGGCTA 1254
|||||||||||| | ||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 776 TTTGTTGATTTT-ACAAACCCTGCCTGTGCTGCGACTGCTCTGAGCGCCTTACAAGGCTA 834
Query 1255 TCGAATGGATGAAGACGAATCCGATTCCAAGATTT-TGCGGCTCCAATTTTCCAG-AAAC 1312
||||||||| ||| |||| || ||||||||| || |||||||||| ||||| || ||||
Sbjct 835 TCGAATGGACGAAAACGAGTCTGATTCCAAG-TTCCTGCGGCTCCAGTTTTCTAGGAAAC 893
Query 1313 CCAGGTCCAAGACCAGGACAACGTGGAGGAAGAAGGTGA 1351
| |||| |||||||||||||| | |||||||||||||
Sbjct 894 C-AGGTTCAAGACCAGGACAAAG---AGGAAGAAGGTGA 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5