BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472372
Length=1457
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21370.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1788 0.0
> AT1G21370.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF218 (InterPro:IPR003848);
Has 160 Blast hits to 160 proteins in 86 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 102; Plants - 44;
Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). |
chr1:7483882-7485666 FORWARD LENGTH=1612
Length=1612
Score = 1788 bits (968), Expect = 0.0
Identities = 1097/1160 (95%), Gaps = 6/1160 (1%)
Strand=Plus/Plus
Query 194 CTCCCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGGTCTCGAGCTCTGGAT 253
||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 298 CTCTCTAAATCTGATCTGGCTATGCTTAATCCGCCACATTGTTGCTCTCAAGCTCTGGAT 357
Query 254 TTGATTGTATCATGAAAAACTATTCATTTGGATCGAGTAAGGCATTTCATGCGTACTCAA 313
|||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||
Sbjct 358 TTGATTGTATCATGAAAAGTTATCCAATTGGATCGAGTAAGGCATTTCATGCGTACTCAA 417
Query 314 GAAGTAGTGATTTCGATTTAGAATC--G-GGAACTATCAGAAAATCTAGAAAACCAAAGA 370
|||| ||||||||||||||||||| | ||||||||||||||||||||||| || ||||
Sbjct 418 GAAGCGGTGATTTCGATTTAGAATCAGGAGGAACTATCAGAAAATCTAGAAAGCCTAAGA 477
Query 371 ATTCGTTTTCGAAAATGATCAAATCTCTCGGGAATCGTCTTCACCACTTGTTCAAATTGC 430
|||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 478 CTTCGTTTTCGAAGATGATCAAATCTCTTGGGAATCGTCTTCACCACATGTTCAAATTGC 537
Query 431 ACCCGATTCTCGTTTTCATCTTTTGCCTCTCGTTTGGTATCACAGTTCTGATACTTTTAT 490
||||| ||||||||||| || |||| ||||||||||||||||||||||||||||| |||
Sbjct 538 ACCCGGTTCTCGTTTTCGTCGTTTGTGTCTCGTTTGGTATCACAGTTCTGATACTTGTAT 597
Query 491 CGTCGATTTACGAGAACCATTTTGGATCAACGGTTACTTATTATAAGAAGAAAGATTTGG 550
|||||||||||| ||||| ||| ||||||||||||| ||||||||||||||| |||||||
Sbjct 598 CGTCGATTTACGGGAACCGTTTAGGATCAACGGTTAGTTATTATAAGAAGAATGATTTGG 657
Query 551 ATAACGATGGTTATCCATTTGCCAATCTGAAAAACCTTGTGATGGTTGCTGGACACTCTG 610
||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 658 ATAGCGATGGTTATCCATTTGCTAATCTGAAGAACCTTGTGATGGTTGCTGGACATTCTG 717
Query 611 TTTATACGAGTAGTGATTGCGGTAAAGTTGATAAGGAGGATTCGTGGTTCTTGGAGTCTT 670
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 718 TTTATACGAGTAGTGATTGTGGTAAAGTTGAGAAGGAGGATTCGTGGTTCTTGGAGTCTT 777
Query 671 ATCAGAAGAATCCAGGTCAAGCTGCAACGTTCTTGAGTCATATACAAGAAGGTGTTGAAG 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATCAGAAGAATCCAGGTCAAGCTGCAACGTTCTTGAGTCATATACAAGAAGGTGTTGAAG 837
Query 731 CTGCAGGGAAAGATGATGAGTCTTTGCTTCTATTCAGTGGTGGACAGACTCGTAAAGATG 790
| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 838 CAGCAGCGAAAGATGATGAGTCTTTGCTTCTATTCAGTGGTGGAGAGACTCGTAAGGACG 897
Query 791 CAGGACCTCGTAGTGAAGCTCAGAGTTATTGGGCTGTTGCTGAGTCTAAAGGATGGTTCG 850
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 898 CAGGACCTCGTAGTGAAGCTCAGAGTTATTGGGCTGTTGCTGAGTCAAAAGGATGGTTTG 957
Query 851 GTAAGGATGAGGTGAGGTCGAGGGCATTGACGGAAGAGCATGCCAGAGACAGCTTTGAGA 910
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 958 GTAAGAATGAGGTGAGGTCTAGGGCCTTGACGGAAGAGCATGCCAGAGACAGCTTTGAGA 1017
Query 911 ATCTTCTCTTTAGCGTTTGTCGATTCAGAGAGCTCACAGGCTCTTACCCACAGAACATAA 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATCTTCTCTTTAGCGTTTGTCGATTCAGAGAGCTCACAGGCTCTTACCCACAGAACATAA 1077
Query 971 CAGTAGTGAGTTATGATTTTAAGGAGGAGAGATTTGCGCATTTGCATCGTTCAGCAATGG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CAGTAGTGAGTTATGATTTTAAGGAGGAGAGATTTGCGCATTTGCATCGTTCAGCAATGG 1137
Query 1031 GATTTCCGGAATCAAGATTCTTCTACTTAGGAACCCCAGCTTCTCTTTCATCCAAAGAAG 1090
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1138 GATTTCCGGAATCAAGATTTTTCTACTTAGGAACACCAGCTTCTCTATCATCCAAAGAAG 1197
Query 1091 GCGCTCTAAAAGGCGAGGCTATGGTTAGATCTCAGTTTCAAGAAGATCCATACGGATGTG 1150
|||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1198 GCGCTCTAAAAGGCGAGGCTTTGGTTAGATCACAATTTCAAGAAGATCCATACGGATGTG 1257
Query 1151 TTGGTTCGCTTTGGCGTAAGAAGCTGAAGCGTGACCCTTTCCACAGGACTATACCTTACC 1210
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1258 TTGGTTCGCTTTGGCGTAAGAAGCTGAATCGTGACCCTTTCCATAGGACTATACCTTACC 1317
Query 1211 CTAATGGTTGCCCTGAAATTGGAGGATTGTTCAGGTACTGTGGTTCAGCTCCTTTTCCTG 1270
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTATTGGTTGCCCTGAAATTGGAGGATTGTTCAGGTACTGTGGTTCAGCTCCTTTTCCTG 1377
Query 1271 GCTCTCTCCCATGGGACTGATCTGTGTAAGATCTGTACT-A--GAGGAACCAATACTTGA 1327
||||||||||||||| || |||||| |||||||| |||| | |||||| ||||||||||
Sbjct 1378 GCTCTCTCCCATGGGGCTAATCTGTATAAGATCTATACTTAAAGAGGAATCAATACTTGA 1437
Query 1328 TCAAAGAGCTTATTGGTAGA 1347
||||||||||| ||||||||
Sbjct 1438 TCAAAGAGCTTGTTGGTAGA 1457
Score = 148 bits (80), Expect = 1e-34
Identities = 89/93 (96%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 1366 TTTGTATTCTCCTTTCATGTGTTGTC-AAAAACCTAGAATTTTACTTGTATCAAATGCAA 1424
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1520 TTTGTATTCTGCTTTCATGTGTTGTCGAAAAACCGAGAATTTTACTTGTATCAAATGCAA 1579
Query 1425 TTTACCTAAAATAAAATTTTGACATTTCTATCC 1457
||||| |||||||||||||||||||||||||||
Sbjct 1580 TTTACGTAAAATAAAATTTTGACATTTCTATCC 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71836979895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5