BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472375
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 | chr1:7... 1502 0.0
> AT1G21390.1 | Symbols: emb2170 | embryo defective 2170 | chr1:7489151-7490737
REVERSE LENGTH=1164
Length=1164
Score = 1502 bits (813), Expect = 0.0
Identities = 1007/1095 (92%), Gaps = 35/1095 (3%)
Strand=Plus/Plus
Query 1 ATAGAACGGGTCTAGCAAGATTTCTTTTTTGTTTGTTTCCCTTGTTAATTGTTTATAAAC 60
|||||||||||| |||||||| ||||||||||||||||||||||||||| | ||||||||
Sbjct 69 ATAGAACGGGTCAAGCAAGATATCTTTTTTGTTTGTTTCCCTTGTTAATCG-TTATAAAC 127
Query 61 TTGTTTCTCAACAAAACTCAAGTTTTTAAAAACTCCAGTCTTGCAAAATCATCAGA--AT 118
||||||||||| |||||| |||||||||||| |||||||||||||| ||||| || ||
Sbjct 128 TTGTTTCTCAATAAAACTTGAGTTTTTAAAAA-TCCAGTCTTGCAAATTCATC-GACGAT 185
Query 119 GTTAGAT-C--CTTCAGCTAAATCCTTCAATACCCATTTGTGTTTTCCAAGTATTCCGAA 175
||||||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 186 GTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGTGTTTTCCGAGTATTCCCAA 245
Query 176 TGATGATCACTCAGATTCCGGCGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCGCCGGA 235
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
Sbjct 246 TGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCCCCGAA 305
Query 236 GAG---TCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCACCGGATTCTAAAGC 292
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 306 GAGTCCTCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCGCCGGATTCTAAAGC 365
Query 293 ACAAGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTC 352
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTC 425
Query 353 GTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTGAAGGTAAATCAAGAGAATGAACG 412
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 426 GTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAATGAACG 485
Query 413 GAAGGTGTTCGATGAATTGCCTAAGAGAACAATTAGGCCGAGTAAAGTTGTGAGGAAGAC 472
|||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||
Sbjct 486 GAAGGTGTTCGATGAATTGCCTAAGAGAGCAAATAGGCAGAGTAAAGTTGTGAGGAAGAC 545
Query 473 GAAGAGTGATAAACGGATTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCT 532
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCT 605
Query 533 TCTCAAAATGATGTTTCCGGTTAGTTTAGGAACTAAGAAAGATACGACTAAGAAGAAGAA 592
||||||||| ||||||| ||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct 606 TCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAGGATACGACTAAGAAGAAGAA 665
Query 593 GAA-AA-A----GGAGGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCCGAGGAGAC 646
||| || | ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 666 GAAGAAGAAAAAGGATGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCTGAGGAGAC 725
Query 647 TGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCAAGCACAAAGAGGAG 706
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 726 TGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCGAGCACAAAGAGGAG 785
Query 707 TGGTAGTAGCAGTAGCAACAACAGTAATAGGAGCCGAAGTAGCCTAAGGGATGAAAAAAG 766
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct 786 TGGTAGTAGCAGTAGCAACAACAGTATTAGGAGCCGAAGCAGCTTAAGGGATGAAAAAAG 845
Query 767 TAGCTGCTTCTCTTTTCTTACGTTCAAGAGACTAATTCCTCAATATCTGAAACAAAGCTT 826
||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||
Sbjct 846 TAGCTGCTTCTCTTTTCTTACATTCAAGAAACTAATTCCTCAGTATCTGAAACAAAGATT 905
Query 827 TCTTGGCTTAAGAAGCAGAGCTTGATATCCGCA-ACACTCGAGTCTGCGTTTTGCAGTCT 885
| ||||||||||||||||||||||||| |||| ||||||||||| | |||| |||||||
Sbjct 906 TATTGGCTTAAGAAGCAGAGCTTGATAAACGCATACACTCGAGTCAGTGTTT-GCAGTCT 964
Query 886 AATCTTCTG-AGGAACAGCTCTGAGAACAGACACGAAGATGATCACTTTTCCGATAAACT 944
||||||| | ||||||||||| |||||| ||||| ||||||||||||||||||||||| |
Sbjct 965 AATCTTCAGGAGGAACAGCTCAGAGAACGGACACAAAGATGATCACTTTTCCGATAAATT 1024
Query 945 TTTGCTTCTGCAATAGCTTATGTATCCTTTTGGATATGGTTTTAAATTCTGTAAATAGAG 1004
||||||||||||| ||| || |||||||||||||||||||||||| || |||||||||||
Sbjct 1025 TTTGCTTCTGCAAAAGCCTAAGTATCCTTTTGGATATGGTTTTAAGTTATGTAAATAGAG 1084
Query 1005 AG-A-T-TA-A-T-GTGCA---AT----CTCTCA-AA-TCTTGGATTTTGAATTCTAATG 1049
| | | | | | ||||| || |||||| || ||||||||||||||||||||||
Sbjct 1085 ATTAATGTGCAGTTGTGCACTGATTAGTCTCTCACAACTCTTGGATTTTGAATTCTAATG 1144
Query 1050 TACAGTGGTGTTTAG 1064
|||||||||||||||
Sbjct 1145 TACAGTGGTGTTTAG 1159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5