BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472376

Length=225
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21395.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   302    1e-81


> AT1G21395.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G26865.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr1:7491965-7492339 FORWARD LENGTH=375
Length=375

 Score =  302 bits (163),  Expect = 1e-81
 Identities = 210/230 (91%), Gaps = 13/230 (6%)
 Strand=Plus/Plus

Query  1    ATGAGGAT---GAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTAATT  57
            ||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  47   ATGAGGATGAAGAAGATCATGAGTGTGGTGTGGATCACGATGCTACTAATGGCGTTATTT  106

Query  58   ACGATGGGAGGTGATGCAAAGTCGGACAAAGAGTGCCAATTGTTGTGCCATAAGCACTGT  117
            ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  107  ACGATGGGAGGCGAAGCAAAGTCGGACAAAGAGTGCCAAGTGTTGTGCCATAAGCACTGT  166

Query  118  CTACCCACTTCCATTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGTGGGAGGACTCCA  177
            |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  167  CTACCCACTTCCTTTGTTGCAGAGTGTCTCAAATGTCTTGGAATATGCGGGAGGACTCCA  226

Query  178  GCCG-TTGCAGTTGGACTTGGAACCATGGAAT-CTGGCGAACACAAATAA  225
             ||| |||||||||||     | ||||| ||| |||| ||||||||||||
Sbjct  227  -CCGGTTGCAGTTGGA-----A-CCATG-AATTCTGGTGAACACAAATAA  268



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10103817549


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5