BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472378
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily prote... 2102 0.0
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily p... 929 0.0
> AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein
| chr1:7497141-7499579 FORWARD LENGTH=1408
Length=1408
Score = 2102 bits (1138), Expect = 0.0
Identities = 1261/1320 (96%), Gaps = 9/1320 (1%)
Strand=Plus/Plus
Query 1 GATCAAGAACACCGCTTCATTTTAGTCATTAAACAAAGATGGTGATGGGAGGAGAAGCAT 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 GATCAAGTTCACCGCTTCATTTTAGTCATTAAACAAAGATGGTGATGGGAGGAGAAGCAT 154
Query 61 CCATGGAGCTGGACCATTGCTTTCAGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGT 120
||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CCATGGAACTGGACCAGTGTTTTCAGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGT 214
Query 121 GGAGAGATATCCCTGTGGAGCTTCTGATGAGGATCCTTTCCCTTGTTGATGATCGTAATG 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 215 GGAAAGATATCCCTGTGGAGCTTCTGATGAGGATCCTTTCCCTTGTTGATGATCGTAATG 274
Query 181 TCATTGTTGCTTCTGGTGTTTGCTGTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTC 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 275 TCATTGTTGCTTCTGGTGTTTGCACTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTC 334
Query 241 GTCTCCGTCTCTCTTGGTGCAACAGCAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCA 300
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 335 GTCTCCGTCTATCTTGGTGCAACAACAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCA 394
Query 301 AGTTTGTGAAGCTGCAGACTTT-AATACTGCGGCAGGACAAACCACAACTTGAGGACAAT 359
||||||| |||||||||||||| ||| || ||||||||||||| ||||| |||||||||
Sbjct 395 AGTTTGTAAAGCTGCAGACTTTAAAT-CTAAGGCAGGACAAACCGCAACTAGAGGACAAT 453
Query 360 GCAGTGGAGGCCATAGCAAATCACTGCCATGAGTTACAAGAACTTGATCTCAGCAAAAGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCAGTGGAGGCCATAGCAAATCACTGCCATGAGTTACAAGAACTTGATCTCAGCAAAAGC 513
Query 420 TTGAAAATTACAGATCGTTCACTTTATGCACTTGCTCATGGTTGCCCTGACCTCACAAAA 479
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 514 TTGAAAATTACAGACCGTTCACTTTATGCACTTGCTCATGGTTGCCCAGACCTCACAAAA 573
Query 480 CTCAACCTTAGTGGCTGCACTTCATTCAGTGACACTGCTATTGCGTATTTGACCAGATTC 539
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 574 CTCAACCTTAGTGGCTGCACTTCATTCAGCGACACTGCTATTGCGTATTTGACCAGATTC 633
Query 540 TGCAGAAAGCTTAAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 TGCAGAAAGCTTAAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCC 693
Query 600 TTGGAGGTGAATATTGGGAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGT 659
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TTGGAGGC---TATTGGGAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGT 750
Query 660 GAGAATATCAGTGATGATGGGGTAATGAATTTAGCTTATGGCTGTCCAGATCTCAGGACC 719
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 751 GAGAATATCAGTGATGATGGGGTAATGAGTTTAGCTTATGGCTGTCCAGATCTCAGGACC 810
Query 720 CTTGACCTCTGTGGCTGTGTTCTAATTACAGATGAGAGTGTGGTAGCTCTAGCGGATTGG 779
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 811 CTTGACCTCTGCGGCTGTGTTCTTATTACAGATGAGAGTGTGGTAGCTCTAGCAGACTGG 870
Query 780 TGTGTCCACTTGAGGTCACTGGGGTTATACTATTGCAGAAACATAACAGACAGGGCAATG 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 871 TGTGTCCACTTGAGGTCACTGGGGCTATACTATTGCAGAAACATAACAGACAGAGCAATG 930
Query 840 TACTCGTTAGCTCAAAGCGGGGTAAAGAACAAACCGGGTTCATGGAAATCAGTAAAGAAA 899
|||||| ||||||||||||||||||||||||||||||| || |||||||| || ||||||
Sbjct 931 TACTCGCTAGCTCAAAGCGGGGTAAAGAACAAACCGGGATCGTGGAAATCGGTTAAGAAA 990
Query 900 GGCAAATACGATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTCACA 959
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 991 GGTAAATACGATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTTACA 1050
Query 960 CCTTCAGCGGTTCAAGCTGTTTGCGATTCCTTTCCCGCGCTTCACACATGTTCAGGAAGG 1019
||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 1051 CCTTCAGCGGTTCAAGCTGTTTGCGATTCATTTCCCGCACTTCACACATGCTCAGGAAGG 1110
Query 1020 CATTCGCTTGTCATGAGCGGTTGTCTGAACTTAACAACTGTCCACTGTGCTTGTATCCTT 1079
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1111 CATTCGCTTGTCATGAGCGGCTGTCTGAACTTAACAACTGTGCACTGTGCTTGTATCCTT 1170
Query 1080 CAGGCTCATCGTGCGCACAATGCGGTTCCTCATCCGGCTCATTGAA-ACAGAGGAATAGA 1138
|||||||||||||| |||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 1171 CAGGCTCATCGTGCACACAATGCGGTTCCTCATCCTGCTCATT-AAGACAGAGGAATAGT 1229
Query 1139 TATGTTGTATATATAAGCATCATGTTGATGGAGATTAGTATTATAAACGAAGTAGCTTTT 1198
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 TATGTTGTATATATAAACATCATGTTGATGGAGATTAGTATTATAAACGAAGTAGCTTTT 1289
Query 1199 TGAAGGTGTATGTGAAACCTTAGAAGCTTTTGAGTTGTTCTTTCTTTGCCTTGAAAGATC 1258
| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1290 TTAAGGTTTATGTGAAACCTTAGAAGCTTTTGAGTTGTTCTTTCTTTGTCTTGAAAGATC 1349
Query 1259 TTTTGTATATTTTGGTGCTATGTTTATGACtttttttttGTAAGACCTCTCTTTGTTACC 1318
|||||||||||||||||||||||| || |||| ||| |||||||||||| ||||||||
Sbjct 1350 TTTTGTATATTTTGGTGCTATGTTCATAACTTCTTTA--GTAAGACCTCTCGTTGTTACC 1407
> AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
protein | chr1:28940750-28942596 FORWARD LENGTH=1416
Length=1416
Score = 929 bits (503), Expect = 0.0
Identities = 882/1063 (83%), Gaps = 34/1063 (3%)
Strand=Plus/Plus
Query 81 TTTC-AGAAGATGAAGATGGAAGGAATCTCGATCAAAGAGTGGAGAGATATCCCTGTGGA 139
|||| |||| ||||||||||||||| | | |||| ||||||| |||||||||||||||
Sbjct 180 TTTCGAGAATATGAAGATGGAAGGAGTTTTGATCTCTGAGTGGAAAGATATCCCTGTGGA 239
Query 140 GCTTCTGATGAGGATCCTTT--CCCTTGTTGATGATCGTAATGTCATTGTTGCTTCTGGT 197
|||||| |||| ||| ||| ||||||||||||||| | ||| || |||||||| ||
Sbjct 240 GCTTCTCATGAAGAT--TTTAAACCTTGTTGATGATCGGACTGTGATCATTGCTTCTTGT 297
Query 198 GTTTGCT-GTGGCTGGAGAGATGCTATCTCTTTTGGCCTCACTCG--TCTCCGTCTCTCT 254
|||| | ||||||||||||||||| | || ||||||||||||| ||||| ||||||
Sbjct 298 ATTTG-TAGTGGCTGGAGAGATGCTGTTTCCCTTGGCCTCACTCGCCTCTCC--CTCTCT 354
Query 255 TGGTGCAA-CAGCAACATGAACAGCTTGGTTCTTTCTCTTGTTCCCAAGTTTGTGAAGCT 313
|||||||| || || |||||||| |||||||| ||||||| |||||| || || |||||
Sbjct 355 TGGTGCAAGAAG-AATATGAACAGTTTGGTTCTATCTCTTGCTCCCAAATTCGTAAAGCT 413
Query 314 GCAGACTTTAATACTGCGGCAGGACAAACCACAACTTGAGGACAATGCAGTGGAGGCCAT 373
||||||||| ||||||| ||||||||||| || ||||||||||| || ||||| |||||
Sbjct 414 TCAGACTTTAGTACTGCGACAGGACAAACCGCAGCTTGAGGACAACGCGGTGGAAGCCAT 473
Query 374 AGCAAATCACTGCCATGAGTTACAAGAACTT-GATC-TCAGCAAAAGCTTGAAAATTACA 431
|||||||||||| |||||| |||||| | || || | | |||||||||| |||||| ||
Sbjct 474 AGCAAATCACTGTCATGAGCTACAAG-ATTTGGA-CTTAAGCAAAAGCTCGAAAATCACT 531
Query 432 GATCGTTCACTTTATGCACTTGCTCATGGTTGCCCTGACCTCACAAAACTCAACCTTAGT 491
|| | ||| || ||| ||||||||| |||||| || |||| || ||||||||||||||
Sbjct 532 GACCATTCCCTATATTCACTTGCTCGTGGTTGTACTAACCTGACTAAACTCAACCTTAGC 591
Query 492 GGCTGCACTTCATTCAGTGACACTGCTATTGCGTATTTGACCAGATTCTGCAGAAAGCTT 551
||||||||||| ||||| ||||||||| ||||| ||||||| ||||| ||||| |||||
Sbjct 592 GGCTGCACTTCGTTCAGCGACACTGCTCTTGCGCATTTGACAAGATTTTGCAGGAAGCTC 651
Query 552 AAAGTTTTGAATCTTTGCGGATGTGTCAAAGCTGTAACTGACAATGCCTTGGAGGTGAAT 611
||| || |||||||||| || ||||| |||||||| |||||||| | ||| | | | |
Sbjct 652 AAAATTCTGAATCTTTGTGGTTGTGTTGAAGCTGTATCTGACAATACATTGCA-G-G-CT 708
Query 612 ATTGG-GAATAACTGCAATCAGATGCAGTCACTAAACTTGGGATGGTGTGAGAATATCAG 670
||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 709 ATTGGAGAA-AACTGCAATCAGTTGCAGTCACTAAACTTGGGATGGTGTGAGAATATAAG 767
Query 671 TGATGATGGGGTAATGAATTTAGCTTATGGCTGTCCAGATCTCAGGACCCTTGACCTCTG 730
||||||||| || |||| |||||||||||| ||||| ||| | || || ||||| || ||
Sbjct 768 TGATGATGGAGTTATGAGTTTAGCTTATGGTTGTCCTGATTTAAGAACTCTTGATCTTTG 827
Query 731 TGGCTGTGTTCTAATTACAGATGAGAGTGTGGTAGCTCTAGCGGATTGGTGTGTCCACTT 790
| ||||||||||||| |||||||||||||| || ||| | ||| || |||| | |||||
Sbjct 828 TAGCTGTGTTCTAATCACAGATGAGAGTGTTGTGGCTTTGGCGAATCGGTGCATTCACTT 887
Query 791 GAGGTCACTGGGGTTATACTATTGCAGAAACATAACAGACAGGGCAATGTACTCGTTAGC 850
||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 888 GAGGTCATTGGGGTTATACTACTGCAGAAACATTACAGACAGAGCAATGTACTCTTTAGC 947
Query 851 TCAAAGCGGGGTAAAGAACAAAC-CGGGTTCATGGAAATCAGTAAAGAAAGGCAAATACG 909
||| ||||| || |||||||||| || | | ||| | | ||||||||||| |||| ||
Sbjct 948 TCAGAGCGGAGTCAAGAACAAACACGAGATG-TGGCGAGCGGTAAAGAAAGGAAAATTCG 1006
Query 910 ATGAAGAAGGACTGAGAAGTCTCAACATTAGCCAATGCACTGCCCTCACACCTTCAGCGG 969
||||||||||||| ||||| || |||||||| ||||||||| ||| ||||||||||| |
Sbjct 1007 ATGAAGAAGGACTAAGAAGCCTTAACATTAGTCAATGCACTTACCTAACACCTTCAGCTG 1066
Query 970 TTCAAGCTGTTTGCGATTCCTTTCCC-GCGCTTCACACATGTTCAGGAAGGCATTCGCTT 1028
|||||||||| || ||| | || ||| || || ||||| |||||||| || ||||| |||
Sbjct 1067 TTCAAGCTGTCTGTGATACATT-CCCTGCTCTCCACACTTGTTCAGGCAGACATTCACTT 1125
Query 1029 GTCATGAGCGGTTGTCTGAA-CTTAACAA-CTGTCCACTGTGCTTGTATCCTTCAGGCTC 1086
||||||||||||||| |||| || | ||| |||| || ||||||||||||||||| ||||
Sbjct 1126 GTCATGAGCGGTTGTTTGAATCT-A-CAATCTGTTCATTGTGCTTGTATCCTTCAAGCTC 1183
Query 1087 ATCGTGCGCACAATGCGGTT-CC-TCATCCGGCTCATTGAAAC 1127
| || | |||| || || || ||| ||||| |||||||||
Sbjct 1184 ACCGCACTCACAC--CGTTTACCCTCACCCGGCGCATTGAAAC 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64859104140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5