BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472380
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 1749 0.0
AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase famil... 817 0.0
> AT1G21440.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr1:7502159-7504175 REVERSE LENGTH=1249
Length=1249
Score = 1749 bits (947), Expect = 0.0
Identities = 1083/1148 (94%), Gaps = 12/1148 (1%)
Strand=Plus/Plus
Query 1 CTTCACTCTCCAACAGTTTGGTAATAATATCTTGTGAGCTTCGAAAATGTCGATGTTAAT 60
|||||||||||||| | || | || |||||| ||||||||| |||||||||||||||
Sbjct 30 CTTCACTCTCCAAC-GGTT-CT-GTACTATCTTCAGAGCTTCGAGAATGTCGATGTTAAT 86
Query 61 GGCGGCCAAATCCACTTCACTCTTTAGCTCAAACCCAACAATTTCAGCTAGAATCGGGCA 120
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 87 GGCGGCCAAATCCACTTCACTCTTTAGCTCAAACCCTACAATTTCAGCTAAAATAGGGCA 146
Query 121 AAACCCTCGC-GCTGTCAGATCGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACC 179
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 AAACCCTCGCGGC-GTCAGATCGGTTTATCCGACGGTGAGAATGCAGTCACGTGTTCACC 205
Query 180 GTCTGATCGAAGAGCAAGGCGCTGTGCTTATTCCCGGAGTCTACGACGCATTATCGGCGG 239
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 206 GTCTGATTGAAGAGCAAGGTGCTGTGCTTATTCCCGGAGTCTACGACGCATTATCTGCGG 265
Query 240 CTATTGTGCAGCAGACCGGATTCTCCGCCGCATTAATCTCCGGTTACGCTGTCTCCGCCG 299
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 266 CTATTGTGCAGCAGACCGGATTCTCCGCCGCATTAATCTCCGGTTACGCCCTCTCCGCCG 325
Query 300 TAACTTTGGGAAAACCCGATTTCGGTTTGATAACACCGCCGGAGATGGCAGCAACGGCGA 359
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 326 TAACTTTGGGAAAACCAGATTTCGGTTTGATAACACCTCCGGAGATGGCAGCAACGGCGA 385
Query 360 GATCAGTGTGTGCTGCTGCTCCAAAGATTCCAATCATTGCCGATGCAGATACTGGTGGAG 419
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 386 GATCAGTGTGTGCTGCGGCTCCAAAGATTCCAATCATTGCAGATGCAGATACTGGTGGAG 445
Query 420 GAAATGCTCTCAATGTTCAAAGAACCGTTAAGGACTTAATCGCAGCAGGTGCTGCTGGTT 479
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 446 GAAATGCTCTCAATGTTCAAAGAACCGTCAAGGACTTAATCGCAGCAGGTGCTGCTGGTT 505
Query 480 GCTTCCTTGAGGACCAGGCATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GCTTCCTTGAGGACCAGGCATGGCCAAAGAGGTGTGGACATATGCGTGGCAAAGAGGTCA 565
Query 540 TACCTGCGGAGGAGCACGCTGCTAAAATAGCATCGGCAAGAGACGCTATTGGAGATGCTG 599
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 566 TACCTGCGGAGGAACACGCTGCTAAAATAGCATCAGCAAGAGACGCTATTGGAGATGCTG 625
Query 600 ACTTTTTCCTAATCGCTAGGACTGATGCTCGTGCACTTTCCGCAAAAACAGGACTTTCAG 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 ACTTTTTTCTAATCGCTAGGACTGATGCTCGTGCACTTTCCGCAAAAACAGGACTTTCAG 685
Query 660 ACGCCATTGACCGTGCTAATCTTTACATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGG 719
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 686 ACGCCATTGACCGTGCTAATCTTTATATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGG 745
Query 720 CACCGAGGGACGATGATGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGCTACAGATTGT 779
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 746 CACCGAGGGACGATGACGAGCTTAAGGAAATCGGAAGGCGCACAAAAGGTTACAGACTGT 805
Query 780 GTAACATGCTTGAAGGTGGACGCACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 GTAACATGCTTGAAGGTGGACGCACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGG 865
Query 840 GCTTTCATTTGATCGCACACCCACTTACCTCGCTTTATGCATCGACCCGAGCTCTTGTGG 899
| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
Sbjct 866 GTTTTCACTTGATCGCACACCCACTTACCTCGCTCTATGCGTCGACTCGAGCTCTTGTCG 925
Query 900 ATGTACTCAAGATTCTCAAGGA-AAAGGGAACCACCAAAGATCACTTAGAAAAGATGATT 958
|||| || |||||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 926 ATGTTCTTAAGATTCTCAAGGAGAAAGG-AACCACCAAAGACCACTTAGAAAAGATGATA 984
Query 959 ACTTTCGAGGAGTTTAACAGTTTGGTGGACTTGGATTCATGGTATGAGCTTGAAACTAAG 1018
|||||||| ||||||||| |||||||| |||||||||||||||||||||| ||||| |||
Sbjct 985 ACTTTCGAAGAGTTTAACCGTTTGGTGAACTTGGATTCATGGTATGAGCTCGAAACCAAG 1044
Query 1019 TACTCTAACCTCAGAAACGCGCTTGGG-ACAACAAAGTGATGAGATTCTGACAACTCTGG 1077
|||||||||||||||||||| || ||| | |||||| | |||||||||||| ||||||
Sbjct 1045 TACTCTAACCTCAGAAACGCTCTAGGGGA-AACAAAATAATGAGATTCTGATTACTCTGT 1103
Query 1078 CCACAATGGAAGCTCTTGGACAATGTTTCATCAATAATGTTTTCtt-ttttttCACTTGT 1136
||||||| |||||||||| |||||| |||||||||||||| |||| |||||||||||||
Sbjct 1104 CCACAATCGAAGCTCTTG--CAATGTATCATCAATAATGTTATCTTCTTTTTTCACTTGT 1161
Query 1137 TTGTGTCA 1144
|||| |||
Sbjct 1162 TTGTATCA 1169
> AT1G77060.1 | Symbols: | Phosphoenolpyruvate carboxylase family
protein | chr1:28951685-28953509 REVERSE LENGTH=1199
Length=1199
Score = 817 bits (442), Expect = 0.0
Identities = 853/1049 (81%), Gaps = 38/1049 (4%)
Strand=Plus/Plus
Query 38 GCTTCGAA-AATGTCGATGTTAATGGCGGCCAAATCCACTTCACTC--TT-T---AGCTC 90
|||||||| |||||||||||||||||| | |||| | ||||||||| || | ||||
Sbjct 51 GCTTCGAAGAATGTCGATGTTAATGGCTGTCAAAACAACTTCACTCTGTTGTAGCAGCTT 110
Query 91 AAACCCAACAATTTCAGCTAGAATCGGGCAAAACCCTCGCGCTGTC-AGATCGGTTTATC 149
||||| ||| |||| | | | || | | ||||| ||||| | | |||| ||| |||
Sbjct 111 AAACCTTACAGCTTCACCAACATTCCGACGGAACCCACGCGC-GGCGAGATTGGTGAATC 169
Query 150 CGACGGTGAGAATGCAGTCACGTGTTCACCGTCTGATCGAAGAGCAAGGCGCTGTGCTTA 209
|||| | |||||| || ||||| |||| || ||||| ||||| |||||| ||||||||
Sbjct 170 CGACAGCGAGAATCCAAACACGTTTTCATCGCCTGATTGAAGAACAAGGCATTGTGCTTA 229
Query 210 TTCCCGGAGT-CTACGACGCATTATCGGCGGCTATTGTGCAGCAGACCGGATTCTCCGCC 268
| || ||| | |||||| || ||||| ||||||||||||||||| ||||||||||||||
Sbjct 230 TGCCTGGA-TGCTACGATGCCTTATCCGCGGCTATTGTGCAGCAAACCGGATTCTCCGCT 288
Query 269 GCATTAATCTCCGGTTACG-CTGTCTCCGCCGTAACT-TTGGGAAAACCCGATTTCGGTT 326
| || || |||||||||| || | |||| | | || |||||||||||||||||||||
Sbjct 289 GGTTTTATATCCGGTTACGCCT-TATCCG-CTTCTCTCCTGGGAAAACCCGATTTCGGTT 346
Query 327 TGATAACACCGCCGGAGATGGCAGCAACGGCGAGATCAGTGTGTGCTG-CTGCTCCAAAG 385
|| ||||||| ||||||||||| || ||||| || || |||||||| | | ||||| ||
Sbjct 347 TGCTAACACCACCGGAGATGGCTGCGACGGCAAGGTCGGTGTGTGC-GTCAGCTCCTAAT 405
Query 386 ATTCCAATCATTGCCGATGCAGATACTGGTGGAGGAAATGCTCTCAATGTTCAAAGAACC 445
|| || |||||||| ||||| ||||| |||||||||||||| || || |||||||||||
Sbjct 406 ATACCCATCATTGCAGATGCTGATACCGGTGGAGGAAATGCGCTAAACATTCAAAGAACC 465
Query 446 GTTAAGGACTTAATCGCAGCAGGTGCTGCTGGTTGCTTCCTTGAGGACCAGGCATGGCCA 505
|| ||||| || || ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 466 GTAAAGGATTTGATTGCAGCTGGTGCTGCTGGTTGCTTCCTTGAGGACCAAGCATGGCCA 525
Query 506 AAGAGGTGTGGACATATGCGTGGCAAAGAGGTCATACCTGCGGAGGAGCACGCTGCTAAA 565
|||| |||||| ||||||||||| ||| |||| ||||| || || || || || || |||
Sbjct 526 AAGAAGTGTGGTCATATGCGTGGTAAACAGGTGATACCAGCAGAAGAACATGCCGCAAAA 585
Query 566 ATAGCATCGGCAAGAGACGCTATTGGAGA-TGCTGACTTTTTCCTAATCGCTAGGACTGA 624
|||||||| || |||| ||||||||||| | ||||||| ||||| |||| || || ||
Sbjct 586 ATAGCATCAGCTCGAGATGCTATTGGAGACT-CTGACTTCTTCCTTGTCGCAAGAACAGA 644
Query 625 TGCT-CGTGC-ACTTTCCGCAAAAACAGGACTTTCAGACGCCATTGAC-CGTGCTAATCT 681
| | ||||| || ||| |||||| |||| ||| ||||||||||| | |||| ||||||
Sbjct 645 CG-TGCGTGCTAC-TTCTGCAAAATCAGGGCTTGAAGACGCCATTG-CACGTGTTAATCT 701
Query 682 TTACATGGAGGCAGGAGCTGATGCTTCCTTTGTTGAGGCACCGAGGGACGATGATGAGCT 741
|||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||
Sbjct 702 ATACATGGAGGCAGGAGCTGATGCTTCCTTTGTAGAGGCACCAAGAGACGACGATGAGCT 761
Query 742 TAAGGAAATCGGAAGGCGCACAAAAGGCTACAGA-TTGTGTAACATGCTTGAAGGTGGAC 800
|||||||| |||| ||||||||||| || ||| || || |||||| ||||||| |||
Sbjct 762 CAAGGAAATTGGAAAACGCACAAAAGGTTATAGAGTT-TGCAACATGATTGAAGGAGGA- 819
Query 801 G-CACGCCATTGCATACGCCTGATGAGCTTAAAGAAATGGGCTTTCATTTGATCGCACAC 859
| ||| ||||| || |||||||||||||||||||||||||| || || ||||| | |||
Sbjct 820 GTCACACCATTACACACGCCTGATGAGCTTAAAGAAATGGGATTCCACTTGATAGTTCAC 879
Query 860 CCACTTACCTCGCTTTATGCATCGACCCGAGCTCTTGTGGATGTACTCAAGATTCTCAAG 919
|| |||||| | || ||||||||||| |||||||| || ||||| ||||||| ||| ||
Sbjct 880 CCCCTTACCGCACTCTATGCATCGACTCGAGCTCTGGTCGATGTTCTCAAGACTCTTAAA 939
Query 920 GAAAAGGGAACCAC-CAAAGATCACTTAG-AAAAGATGATTACTTTCGAGGAGTTTAACA 977
||||| || | ||| | | |||||||| | |||||||| |||||| ||||| || || |
Sbjct 940 GAAAACGGTAGCACTCGA-GATCACTT-GCAAAAGATGGCTACTTTTGAGGAATTCAATA 997
Query 978 GTTTGGTGGACTTGGATTCATGGTATGAGCTTGAAACTAAG-TACTCTAACCTCAGAAAC 1036
|||||||||| || ||||| |||| |||||||||| || | || || ||||||||||||
Sbjct 998 GTTTGGTGGATTTAGATTCGTGGTTTGAGCTTGAAGCTC-GCTATTCAAACCTCAGAAAC 1056
Query 1037 GCGCTTGGGACAAC-AAAGTGATGA-GAT 1063
|| ||||||||||| ||| | |||| |||
Sbjct 1057 GCTCTTGGGACAACCAAA-TCATGAAGAT 1084
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5