BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472381
Length=2267
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21450.1 | Symbols: SCL1 | SCARECROW-like 1 | chr1:7508969-7... 3531 0.0
> AT1G21450.1 | Symbols: SCL1 | SCARECROW-like 1 | chr1:7508969-7511801
FORWARD LENGTH=2298
Length=2298
Score = 3531 bits (1912), Expect = 0.0
Identities = 2158/2276 (95%), Gaps = 20/2276 (1%)
Strand=Plus/Plus
Query 1 AGAAAAATCAGAAACCAAAGCCAAAGCGTTTTTATCATTTCTGTCTTCTTCTGTGTAAAC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAAAATCAGAACCCAAAGCCAAAGCGTTTTTATCATTTCTGTCTTCTTCTGTGTAAAC 60
Query 61 AGTAAGACCCAAAAGGTCAAACCTTTAGGCTTTGTTTCTTCCTTT-AGGC--TTTTCCGA 117
|||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 61 AGTAAGACCCCAAAGGTCAAACCTTTAGGCTTTGTTTCTTCCTTTAAGGCTTTTTTCCGA 120
Query 118 AGTTTATATCAGATTTCTTCTTGTCAATTTCTTCATTTGGGCATCCTCCATAATCCAAGA 177
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 121 CGTTTATATCAGATTTCTTCTTGTCAATTTCTTCATTTGGACAACCTCCATAATCCAAGA 180
Query 178 CCGACCCTTTTCCTCTAATCTCTCCTGTTGCAGCTGAATGGTGGAACAAACTGTGGTTAG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCGACCCTTTTCCTCTAATCTCTCCTGTTGCAGCTGAATGGTGGAACAAACTGTGGTTAG 240
Query 238 AGAACATATTAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAG 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAACATATCAAAGCGAGAGTCATGTCATTAGTGAGGTCTGCAGAGCCATCCTCATATAG 300
Query 298 GAACCCGAAGCTTTACTCGTTGAATGAGAATGGTAACAACAATGTTGTCACTTCTGCTCA 357
|||||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 301 GAACCCGAAGCTTTACACGTTGAATGAGAATGGTAATAACAATGGTGTCAGTTCTGCTCA 360
Query 358 AATCTTTGATCAAGACAGGTCCAAGAACCCTTGTCTAACTGATGATTCTTACCCAAGCCA 417
||||||||||| ||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 361 AATCTTTGATCCAGATAGGTCAAAGAATCCTTGTCTGACTGATGATTCTTACCCAAGCCA 420
Query 418 AAGTTATGAGAAGTACTTTCTCGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGG 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGTTATGAGAAGTACTTTCTTGATTCGCCAACTGATGAGTTTGTTCAACATCCTATTGG 480
Query 478 CTCCGGTGCTTCGGTTAGCTCATTTGGCTCTTTAGACTCATTTCCTTATCAGTCAAGACC 537
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTGGTGCCTCGGTTAGCTCATTTGGCTCTTTAGACTCATTTCCTTATCAGTCAAGACC 540
Query 538 GGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTTGATTCAACCTCTACTTCATCTAC 597
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 AGTTCTTGGATGTTCCATGGAATTTCAGTTACCGTTGGATTCAACCTCTACTTCATCTAC 600
Query 598 GAGGCTTTTGGGAGATTACCAAGCAGTTTCTTACAGTCCGAGCATGGATGTGGTGGAGGA 657
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 601 AAGGCTTTTGGGAGATTACCAAGCGGTTTCTTACAGTCCGAGCATGGATGTAGTGGAGGA 660
Query 658 GTTTGATGATGAGCAAATGAGATCAAAGATTGAAGAGCTTGAAAGAGCGCTTCTCGGCGA 717
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 661 GTTTGATGATGAGCAAATGAGATCAAAGATTCAAGAGCTTGAAAGAGCGCTTCTCGGCGA 720
Query 718 TGAAGATGATAAAATGATTGGAATAGATAATCTCATGGAGATTGACAGCGAATGGTCATA 777
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 721 TGAAGATGATAAAATGGTTGGAATAGATAACCTCATGGAGATTGACAGCGAATGGTCGTA 780
Query 778 CCAAAACGAAAGCGAACAGCATCAGGACTCACCCAAAGAATCATCATCTGCAGATTCCAA 837
|||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 781 CCAAAACGAAAGCGAACAGCATCAAGACTCGCCCAAAGAATCATCGTCTGCAGATTCCAA 840
Query 838 CTCTCATGTAAGTAGCAAAGAAGTGGTGTCGAAAGCCACTCCAAAGCAAATCTTGATATC 897
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 841 CTCTCATGTAAGTAGCAAAGAAGTGGTGTCTCAAGCCACTCCAAAGCAAATCTTGATATC 900
Query 898 TTGTGCTCGTGCGTTATCCGAAGGGAAATCAGAAGAAGCTTTGTCAATGGTAAATGAGCT 957
||||||||||||| |||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 901 TTGTGCTCGTGCGCTATCTGAAGGAAAATTAGAAGAAGCTTTGTCAATGGTAAATGAGCT 960
Query 958 GAGGCAGATTGTTTCAATCCAAGGAGATCCTTCTCAGAGAATCGCAGCTTACATGGTGGA 1017
||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 961 GAGGCAGATAGTTTCTATCCAAGGAGACCCTTCTCAGAGAATCGCAGCTTACATGGTGGA 1020
Query 1018 AGGTCTAGCTGCAAGAATGGCTGCTTCCGGAAAATTCATATACAGAGCATTGAAATGCAA 1077
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1021 AGGTCTAGCTGCAAGAATGGCCGCTTCAGGAAAATTCATCTACAGAGCATTGAAATGCAA 1080
Query 1078 AGAACCTCCTTCAGATGAGAGACTCGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCTTG 1137
||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1081 AGAGCCTCCTTCGGATGAGAGGCTTGCAGCTATGCAAGTCCTGTTTGAAGTCTGCCCTTG 1140
Query 1138 TTTCAAATTCGGGTTTTTAGCAGCTAATGGTGCGATAATTGAAGCAATAAAAGGTGAAGA 1197
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1141 TTTCAAGTTCGGGTTTTTAGCAGCTAATGGTGCGATACTTGAAGCAATCAAAGGTGAAGA 1200
Query 1198 GGAAGTTCACATAATCGATTTCGATATAAACCAAGGTAACCAATACATGACACTGATACG 1257
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 AGAAGTTCACATAATCGATTTCGATATAAACCAAGGGAACCAATACATGACACTGATACG 1260
Query 1258 AAGTGTAGCTGAGTTACCCGGTAAACGTCCTCGCCTGAGGTTAACCGGAATCGATGACCC 1317
||| | |||||||| || |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1261 AAGCATTGCTGAGTTGCCTGGTAAACGACCTCGCCTGAGGTTAACAGGAATTGATGACCC 1320
Query 1318 TGAATCAGTCCAACGCTCCATCGGAGGGTTAAGAATCATCGGTTTAAGACTCGAGCAACT 1377
||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 1321 TGAATCAGTCCAACGCTCCATTGGAGGGCTAAGAATCATCGGTCTAAGACTCGAGCAACT 1380
Query 1378 CGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCAGTGCCTTCAAAGACTTCGATTGT 1437
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1381 CGCAGAGGATAATGGAGTATCCTTCAAATTCAAAGCAATGCCTTCAAAGACTTCGATTGT 1440
Query 1438 CTCTCCATCAACACTCGGTTGCAAACCTGGAGAAACCTTAATTGTGAACTTTGCATTCCA 1497
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1441 CTCTCCATCAACACTCGGTTGCAAACCAGGAGAAACCTTAATAGTGAACTTTGCATTCCA 1500
Query 1498 GCTTCACCACATGCCTGACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTCCA 1557
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1501 ACTTCACCACATGCCTGACGAGAGTGTCACAACAGTAAACCAGCGGGACGAGCTACTTCA 1560
Query 1558 CATGGTCAAAAGCTTAAACCCAAAGCTCGTCACAGTCGTTGAACAAGACGTGAACACAAA 1617
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1561 CATGGTCAAAAGCTTAAACCCAAAGCTTGTCACGGTCGTTGAACAAGACGTGAACACAAA 1620
Query 1618 CACTTCCCCATTCTTCCCCAGATTCGTAGAGGCTTACGAGTACTACTCAGCGGTTTTCGA 1677
|||||| || ||||| ||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1621 CACTTCACCGTTCTTTCCCAGATTCATAGAGGCTTACGAATACTACTCAGCAGTTTTCGA 1680
Query 1678 ATCTCTAGACATGACACTTCCGAGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTG 1737
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GTCTCTAGACATGACACTTCCAAGAGAAAGCCAAGAGAGGATGAATGTAGAAAGACAGTG 1740
Query 1738 TCTTGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATA 1797
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 TCTCGCTAGAGACATAGTCAACATTGTTGCTTGCGAAGGAGAAGAACGGATAGAGAGATA 1800
Query 1798 CGAGGCTGCCGGAAAATGGAGAGCGAGGATGATGATGGCTGGATTCAATCCAAAACCAAT 1857
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1801 CGAGGCTGCGGGAAAATGGAGAGCAAGGATGATGATGGCTGGATTCAATCCAAAACCAAT 1860
Query 1858 GAGCGCTAGAGTAACCAACAATATACAGAACCTCATAAAGCAACAATATTGCAATAAGTA 1917
||| |||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1861 GAGTGCTAAAGTAACCAACAATATACAAAACCTGATAAAGCAACAATATTGCAATAAGTA 1920
Query 1918 CAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAAGAGAAAAGCTTAATCGT 1977
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1921 CAAGCTTAAAGAAGAAATGGGTGAGCTCCATTTTTGCTGGGAGGAGAAAAGCTTAATCGT 1980
Query 1978 TGCTTCAGCTTGGAGGTAAGATAAGTGACA-GAGCATA--GTCCTTATGTTTCATAAAAA 2034
|||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1981 TGCTTCAGCTTGGAGGTAAGATAAGTGACAAGAGCATATAGTCTTTATGTTTCATAAAA- 2039
Query 2035 CACTG-TTATGTTTTTACTGTAATCTTGGGTTATTGTGTAACTGCTTAAATCATCTCCAT 2093
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2040 CA-TAATTATGTTTTTACTGTAATCTTGGGTTATTGTGTAACTGGTTAAATCATCTCCAT 2098
Query 2094 GTATTATTATTACCAGAGGTCAGGGGTGATCACAGGTACTAAA-GTTAATCTAACACTTT 2152
||||||||| |||||||| |||||||||||||||||||||| | |||||||||||||
Sbjct 2099 GTATTATTA---CCAGAGGTTAGGGGTGATCACAGGTACTAAAAGCTAATCTAACACTTA 2155
Query 2153 CTTGAACAAATTTTCTTTCttttttt-CTCTATTGTATAAAAATAATTAGAGTTTTGGTT 2211
| ||| || |||||||||||||||| | ||||| |||||||||||||||||||||||||
Sbjct 2156 -TGGAAGAATTTTTCTTTCTTTTTTTTCCCTATTATATAAAAATAATTAGAGTTTTGGTT 2214
Query 2212 CTAAGCCTATTTGTCCATAAGTGTGAATGAAAGTGTTTACATGTTCATATTTCAGT 2267
|||| |||||||| | ||||||||||||| || |||||||||||||||||||||
Sbjct 2215 CTAAACCTATTTG-C--TAAGTGTGAATGA--GTCTTTACATGTTCATATTTCAGT 2265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112499421345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5