BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472383
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21480.1 | Symbols: | Exostosin family protein | chr1:75189... 2643 0.0
> AT1G21480.1 | Symbols: | Exostosin family protein | chr1:7518946-7521504
REVERSE LENGTH=1637
Length=1637
Score = 2643 bits (1431), Expect = 0.0
Identities = 1554/1612 (96%), Gaps = 13/1612 (1%)
Strand=Plus/Plus
Query 1 AAAACATTTAAAGAAGCAAAACGAAGAAAACACTGAGAGAGATAGAAATGGCGAGCTTAA 60
||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 33 AAAACATTTGAAGAAGCAAAACGAAG-AAACAGTGAGAGAGATAGAAATGGCGAGCTTAA 91
Query 61 CTAGTAATAAGCCTAGAAACTTTGGTGCGTATAGTCACTACGCTACTCCCTGCACTCGCA 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CTAGTAATAAGCCTAGAAATTTTGGTGCGTATAGTCACTACGCTACTCCCTGCACTCGCA 151
Query 121 CGCACCAGATTGGAGCTCTTTTTCTCGTCGTCTCCACCTTCTTCGTCACTAGGCTTTTCG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 152 CGCACCAGATTGGAGCTCTTTTTCTCGTCGTCTCTACCTTCTTCGTCACTAGGCTTTTCG 211
Query 181 ATCAGTGGTTCTCAGAATCCAATTCCGTTTCTCCGGTGATTGATCTCCGCCGTACTTCTT 240
||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 212 ATCAGTGGTTCTCGGAATCCAATTCCGTTACTCCGGTGATTGATCTCCGTCGTACTTCTT 271
Query 241 CTTCTTACGGAATCACGACTTATAACGGTATTCTACGGTGGCCGGAGCGAGGGTATGGGT 300
||||||||||||||| ||| ||||||||||| ||||||||||||||||||| |||||||
Sbjct 272 CTTCTTACGGAATCAAAACTGATAACGGTATTATACGGTGGCCGGAGCGAGGTTATGGGT 331
Query 301 CTCACCTTTCGCTGAAGATCTACGTTTATGATGAGAATGAGATCGACGGTCTTAAAGAGC 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CTCACCTCTCGCTGAAGATCTACGTTTATGATGAGAATGAGATCGACGGTCTTAAAGAGC 391
Query 361 TATTGTACGGTAGGGATGGTAGTGTTAAGACCACCGCGTGCTTGAAAGGTCAATGGGGTT 420
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 392 TGTTGTACGGTAGGGATGGTAGTGTTAAGACCACCGCATGCTTGAAAGGTCAATGGGGAT 451
Query 421 CTCAGGTTAAAATTCACAAGTTGCTTTTGGAGTCCAAATTTAGGACGATTAAGAAAGATG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 CTCAGGTTAAAATTCACAAGTTGCTTTTGGAGTCCAAATTTAGGACGATTAAGAAAGATG 511
Query 481 AAGCGGATTTGTTCTTTGTGCCAGCTTATGTTAAATGTGTGAGAATGTTGGGAGGTCTTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 AAGCGGATTTGTTCTTTGTGCCAGCTTATGTTAAATGTGTGAGAATGTTGGGAGGTCTTA 571
Query 541 ATGACAAGGAGATCAATCAGACCTATGTTAAGGTTTTGAGTCAAATGCCGTATTTCCGAA 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 572 ATGACAAGGAGATCAATCAGACCTATGTCAAGGTTTTGAGTCAAATGCCGTATTTCCGAA 631
Query 601 GATCTGGTGGTCGTGATCATATATTTGTTTTTCCGAGTGGTGCTGGAGCTCACTTGTTTA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 GATCTGGTGGTCGTGATCATATATTTGTTTTTCCGAGTGGTGCTGGAGCTCACTTGTTTA 691
Query 661 GATCCTGGTCAACATTTATCAACCGCTCTATTATCCTCACTCCCGAGGCTGACCGGACTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 GATCCTGGTCAACATTTATCAACCGCTCTATTATCCTCACTCCCGAGGCTGACCGGACTG 751
Query 721 ACAAGAAAGACACAACTGCCTTTAATACATGGAAAGATATAATCATACCAGGAAACGTGG 780
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 752 ACAAGAAAGACACAACTGCCTTTAATTCATGGAAAGATATAATCATACCAGGAAACGTCG 811
Query 781 ATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGCCTTTGTCAAAGAGGA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 812 ATGATGCTATGACTAAAAATGGACAACCTGATGTTCAGCCTTTGCCTCTGTCAAAGAGGA 871
Query 841 AGTATTTAGCAAATTATTTAGGTCGTGCCCAAGGGAAGGCTGGTCGACTTAAATTGATTG 900
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 872 AGTATTTAGCAAATTATTTAGGTCGTGCACAAGGGAAGGCTGGTCGACTTAAATTGATTG 931
Query 901 ACCTATCAAAGCAATATCCAGATAAGTTAGAATGTCCAGACTTGAAGTTTAGCGGAACTG 960
||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 932 ACCTATCAAAGCAATTTCCAGATAAGCTAGAATGTCCAGATTTGAAGTTTAGCGGAACTG 991
Query 961 AAAAGTTTGGAAGGACAACATATTTTGAACATCTGAGGAACGCCAAGTTCTGCCTCGCTC 1020
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 992 AAAAGTTTGGAAGGACAACATATTTTGAACATCTGAGGAATGCCAAGTTCTGCCTCGCTC 1051
Query 1021 CTCGTGGGGAATCATCATGGACACTTCGCTTTTATGAATCATTCTTTGTGGAATGTGTCC 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 CTCGTGGGGAATCATCATGGACACTTCGCTTTTATGAATCATTCTTTGTGGAATGTGTCC 1111
Query 1081 CGGTTCTTTTGTCTGACCACGCCGAGCTGCCTTTCCAGAATGTTATCGACTATGCCCAAG 1140
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CGGTTCTTTTATCTGACCACGCCGAGCTGCCTTTCCAGAATGTTATCGACTATGCCCAAG 1171
Query 1141 TATCCATCAAATGGCCATCAACTCGAATAGGCGCAGAGTTTCTTGATTACTTAGCTTCAA 1200
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1172 TATCGATCAAATGGCCATCAACTCGAATAGGCTCAGAGTTTCTTGATTACTTAGCTTCAA 1231
Query 1201 TATCAGATAAAGACATAGAAGGAATGATAGCCCGAGGTCGGGAA-ATTAGATGTTTGTTT 1259
||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1232 TATCAGATAGAGACATAGAAGGAATGATAGCCCGAGGTCGG-AAGATTAGATGTTTGTTT 1290
Query 1260 GTGTACGGTCCAGATTCTGCACCTTGCAGTGCGGTTAAAGGGATTCTATGGGAGCTTCAA 1319
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1291 GTGTACGGTCCAGATTCCGCACCCTGCAGTGCGGTTAAAGGGATTCTATGGGAGCTTCAA 1350
Query 1320 CGCAAAGTGAGACATTTCCAGCAATCGACCGAGACGTTTTGGTTGCACAATGGCAGTTTT 1379
|||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 1351 CGCAAAGTTAGACATTTCCAGCAATCGACTGAGACGTTTTGGCTGCACAATGGCAGTTTT 1410
Query 1380 GTGAATAGAGAACTGGTCCAGTTCAGTAGCTGGAGACCTCCTATGCCTCTACCTTGACCG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 GTGAATAGAGAACTGGTCCAGTTCAGTAGCTGGAGACCTCCTATGCCTCTACCTTGACCG 1470
Query 1440 GTTTCAACATTCCACTAGAATATCTTGTTTTTACGAAA-AAA-TGAATGATAAAGTTGAG 1497
|||||||||||||||||||||||||||| ||||||||| ||| ||||||||| | |||||
Sbjct 1471 GTTTCAACATTCCACTAGAATATCTTGTGTTTACGAAACAAAATGAATGATACATTTGAG 1530
Query 1498 TACAGtttttttGTAAACTTGATTTTTT-GTACATACCACAAGAATCTCTTCAGTGAAAT 1556
|||||||||||||| ||||||||||||| ||||||| ||| ||| | ||||| |||
Sbjct 1531 TACAGTTTTTTTGTGAACTTGATTTTTTTGTACATATCAC-----TCT-T-CAGTGGAAT 1583
Query 1557 TTGTTTGAGTCAAATTCGATAGAAAAATGACTAACCAACAAAATTGATAGCT 1608
|||||||| | ||||| |||||||||||||| |||||||||||||||| |||
Sbjct 1584 TTGTTTGACTAAAATTTGATAGAAAAATGACGAACCAACAAAATTGATGGCT 1635
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79417262190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5