BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472386
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21500.1 | Symbols: | unknown protein; Has 29 Blast hits to... 1009 0.0
> AT1G21500.1 | Symbols: | unknown protein; Has 29 Blast hits
to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 27; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:7529882-7531025 REVERSE
LENGTH=617
Length=617
Score = 1009 bits (546), Expect = 0.0
Identities = 591/613 (96%), Gaps = 2/613 (0%)
Strand=Plus/Plus
Query 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTTCT-TTACATCGCTCGCTTTTACATTTT 59
||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||
Sbjct 1 ACTCTATCTTCTATTAGTGTGTTTACCAATTTT-TGTTACATCTCTTGCTTTTACATTTT 59
Query 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCACC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 CTTGAATTAGCCATGGTGGCACATTCACTCGTTCCTCTCTCACCGGCTGCTCACGCCGCC 119
Query 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGACTCTCCTCTCCATCGCCGCGGTCACTGCCGCAGGCTCCTCCCGTCGTCCTTGCAGTT 179
Query 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTTGGGGGTGCATTTTGGAGTTGGAAC 239
||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||
Sbjct 180 CCACCAATTAATCGCAGGACAATTTTGGTGGGGCTAGGCGGTGCGCTATGGAGTTGGAAC 239
Query 240 GCTCTGACCGCTAAGGAGGATGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 GCTCTGGCCGCTAAGGAGGAGGCAATGGCGGCAGCAAGACGGCCGCCTCCACCACCACCT 299
Query 300 AAGGAGAAGAAAGACCCGACCGTGAGCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 AAGGAGAAGAAAGACCCGACCGTGACCGGAGTTCAGGCCAAGGTATTGGCGAGTAAGAAG 359
Query 360 CGCAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGTAAAGAAGAAATGAAGGCTTCCATTGCTAAACTTAGAGAGAAAGGCAAACCTGTTGTT 419
Query 420 GAAGCAAAACCATCTTCCTCTTCTTCAGAATAGCATCCAAGCAACAATTTAAACCCTTTC 479
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 GAAGCAAAACCATCCTCTTCTTCTTCAGAATAGCATCCGAGCAACAATTTAAACCCTTTC 479
Query 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATTAATTCATCTGTCTACCAAATTCATCCCTATGATGTTAATTCACTACTATATTTCGG 539
Query 540 TTTACTCCTATGCTGATTTTGTGGTAGTAAATCCAAAAGCATTCTAGCTTGTCAGAAATC 599
|||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 TTTATTCTTATGCTGATTTTGTGGTAGTAAATTCAAAAGCATTCTAGCTTGTCAGAAATC 599
Query 600 ATCACAATTAGAT 612
|||||||||||||
Sbjct 600 ATCACAATTAGAT 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5