BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472387
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1419 0.0
> AT1G21510.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; EXPRESSED
IN: cotyledon; Has 380 Blast hits to 286 proteins in 63 species:
Archae - 0; Bacteria - 6; Metazoa - 254; Fungi - 44;
Plants - 13; Viruses - 5; Other Eukaryotes - 58 (source: NCBI
BLink). | chr1:7531312-7532629 REVERSE LENGTH=1318
Length=1318
Score = 1419 bits (768), Expect = 0.0
Identities = 1006/1115 (90%), Gaps = 40/1115 (4%)
Strand=Plus/Plus
Query 1 ACACATTATATACAATAAGCATCTCCATTTCCTGTT-TAAACCAATCCCTTTTAATA-TT 58
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 14 ACACATTATATACAATAAGCATCTCCATTTCCTGTTGT-AACCAATCCCTTTTAATAGTT 72
Query 59 ACTTTCTCTCCTAAAGATTTTTC---------a---aaa--aaa----aGGAATGGGTTG 100
|||||||||| || ||||||||| | ||| ||| ||||||||||||
Sbjct 73 ACTTTCTCTCGTACAGATTTTTCGAAAAAAGTATTGAAATCAAACTCTAGGAATGGGTTG 132
Query 101 TTGTATCAGCAAATGCTCTCCAAAGACGAAAGATTTCAAAGAAGCAGAAGAATCTCATGA 160
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct 133 TTGTATCAGCAAATGCTCTCCAAAGTCGAAAGATTTCAAAGAAGCAGAAGAACCTCACGA 192
Query 161 GAAGTACTGTTATGTTCCAGAGAAGCTGTTCATGTCGCGTTGTCCAAGTCGTGTTTCTCC 220
||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 193 GAAGTACTGTTCTGTTCCAGAGAAGATGTTCATGTCTCGTTGTCCAAGTCGTGTTTCTCC 252
Query 221 ACTTAATCTTCCGGAGAAGAACCGGTTTAATCCTATCCCTGTCCCGGATAAGTTTATAC- 279
|||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| |
Sbjct 253 ACTTAATCTTCCGGAGAAAAACCGGTTTCATCCTATCCCTGTCCCGAATAAGTTTAT-CA 311
Query 280 ATATCCCGGATAAACTCCTTCCTCTTTCTCCTCCTGTAAAGTTGGCATCTTTCTCTCCAA 339
||||||||| |||| | | |||| || ||||||| ||||||||||||||||||||||
Sbjct 312 ATATCCCGGGTAAAGTAATCCCTCCCCCTTCTCCTGTGAAGTTGGCATCTTTCTCTCCAA 371
Query 340 TCCAACCTTCAACCACAAGCAACTCTACTCTCAGCTCATCAAGCTCCTCACTTTCGACAG 399
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
Sbjct 372 TCCAACCTTCAACCACAAGCAACTCTTCTCTCAGCTCATCAAACTCGTCACTTTCGACCG 431
Query 400 CTTCTTCAGTCTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 459
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CCTCTTCAGTTTCGGTTTCGAAGGAGAGATCTTTCTCCAATGATTTCTTGCGTGCTTGTT 491
Query 460 ACCAAGAGAATTCTCATGTTGCTCGAATTCA-TTCTTTACGAGAAGCTTCTCTATCAATG 518
||||||||||||| |||||||||||||| || ||| |||||||||||||||||||| |||
Sbjct 492 ACCAAGAGAATTCACATGTTGCTCGAAT-CAATTCCTTACGAGAAGCTTCTCTATCTATG 550
Query 519 AAAACCACAAAACCGGGATATCCTAGCCGGTTCGATTCTCCGGTTTTACCATA-CCGGTA 577
||||||||||||||| |||||||||||||||| |||||||||||| ||||| | |||| |
Sbjct 551 AAAACCACAAAACCGAGATATCCTAGCCGGTTTGATTCTCCGGTTATACCA-AGCCGGAA 609
Query 578 TTCAACAACACCAAACAGAGCAAATGAAGATCCGAAAAGAGGACCAAATTGTTCTAAGAG 637
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||
Sbjct 610 TTCAACAACACCAAACAGAGCAAATGAAGATTCTAAAAGAGGATCAAATTGTTCTAAGAG 669
Query 638 AACTCGAGAGCCATCACCAAACCATCGTGCATTGACACGACAAAAGAGTTTTCGTCAAGA 697
||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 670 AACTCGAGAGCTATCACCAAACCATCGTTCATTGACACGACAAAAGAGCTTTCGTCAAGA 729
Query 698 TCAAGAAAGAGTTATTATGTCCTCTTCATCAAATTCTTTAACCAAGGGAAAGTACTTCAA 757
||||||||||||| |||| || ||||||||||| || |||||||||||||||||||| ||
Sbjct 730 TCAAGAAAGAGTTGTTATCTCTTCTTCATCAAACTCCTTAACCAAGGGAAAGTACTTGAA 789
Query 758 ATCGCCATCTCCAAGCAGGAGATATGAGGGAAATTTCTTGAAATCTCCATCTCCAAGCAG 817
||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
Sbjct 790 ATCTCCATCTCCAAGCAGAAGATATGAGGGAAATTTCTTGAAATCACCATCTCCAAGCCG 849
Query 818 GAGATTTGGTAT-GACGGCGACT-GATTTGACGGTAAAATCAGTCTCTTCTTGTGTAAGG 875
|||||||||| | | || || || | ||||||||| | ||| | |||||||||||
Sbjct 850 GAGATTTGGTGTAGCCG-CGGCTAG-TTTGACGGT-----C--TCT-T-CTTGTGTAAGG 898
Query 876 AAAGATAGTTTAGATCTGTCTGGTCGCAAGACTTGTCAGAAGAGCAACAGATCAGAGCCT 935
||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 899 AAAGATAGTTTAGATCTGTCTGGTCGCAAGATTTGTCATATGAGCAACAGATCAGAGCCT 958
Query 936 CGGATTCATCGCATAAGTTCTAAGATCGACGAAAAAATTATCAGAGAAGTAATCACAAAC 995
|| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 959 CGAATACATCGCATAAGTTCTAAGATCGACCAAACAATTATCAGAGAAGTAATCACAAAA 1018
Query 996 CATAAGGAACCAGTGGTTCCAATATTCGAAGAAGTCGGCAATCCTCTGATTGATTTGGAT 1055
||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1019 GATAGGGAACCAGTGGTTCCAATATTTGAAGAAGTTGGCAATCCTTTGATTGATTTGGAT 1078
Query 1056 TGCTTTATCTTTCTTTAAGGAGAAGCTTTTAATTT 1090
|||||||||||||||||||||||| | ||| ||||
Sbjct 1079 TGCTTTATCTTTCTTTAAGGAGAAACATTTGATTT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5