BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472389

Length=462
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21525.1 | Symbols:  | pseudogene of unknown protein | chr1:...   656    0.0  


> AT1G21525.1 | Symbols:  | pseudogene of unknown protein | chr1:7537087-7537649 
REVERSE LENGTH=563
Length=563

 Score =  656 bits (355),  Expect = 0.0
 Identities = 416/445 (93%), Gaps = 6/445 (1%)
 Strand=Plus/Plus

Query  22   acacatacacacatcaacacataaacaacCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA  81
            ||||||||||  ||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  40   ACACATACACTTATC-A-ACATAAACAGCCTAAAGATGAGTTCTAAAGGAGAAGGCTCTA  97

Query  82   GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGCAGCGAGTGTGATTCCCGTTAAGAGGA  141
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  98   GTTCTACGGCGGAGAGGGAGGTGAAGAAACAAGTAGCGAGTGTGATTCCCGTTACGAGGA  157

Query  142  AGCTGGTGAAGACTATGGCCGCTAAAGCCATTATCTCTGCCCTCACTCCATCCGGTTGTG  201
            |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct  158  AGCTGGTGAAGACTATGGCCGCGAAAGCCATTATCTCTGCTCTCACGCCATCCGGTTGTG  217

Query  202  GCCGGAACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA  261
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  GCCGGCACTCTGACTCTACCGGCGACGGCAAAGGTAACGGAGGGCGCGTGTACCCCGGTA  277

Query  262  CTCATCGTTGATCGGATATTTTCTTGGGGTTGAAGATATATATGCCGTCGTTATCGtttt  321
            |||||||||||||||  ||||||||||| |||||||||||||||||||| | ||||||| 
Sbjct  278  CTCATCGTTGATCGGCCATTTTCTTGGGATTGAAGATATATATGCCGTCATGATCGTTTA  337

Query  322  tgggttttctttttttattttattttGATATATTTAAATGTTGGTGTTCTCGTTG-TAAT  380
            |||||||||||||| | |||| |||| |||||| ||||||||||||||||||||| ||||
Sbjct  338  TGGGTTTTCTTTTTATGTTTTTTTTTTATATATCTAAATGTTGGTGTTCTCGTTGATAAT  397

Query  381  TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTTTTAAGGATTTAAATGTTT-C  439
            ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
Sbjct  398  TATAAGCTTTTGATAATTATGCTTCTCTCTTTCTTTCTTCTTAAAGATTTAAATGTTTTC  457

Query  440  T--ACTGTTCAGTTTCCGGTAGGGG  462
            |  ||| ||||||||||||||||||
Sbjct  458  TCTACTATTCAGTTTCCGGTAGGGG  482



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22017274062


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5