BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472391

Length=603
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21550.1 | Symbols:  | Calcium-binding EF-hand family protei...   715    0.0  


> AT1G21550.1 | Symbols:  | Calcium-binding EF-hand family protein 
| chr1:7553101-7553876 REVERSE LENGTH=776
Length=776

 Score =  715 bits (387),  Expect = 0.0
 Identities = 498/548 (91%), Gaps = 22/548 (4%)
 Strand=Plus/Plus

Query  1    AAACTACCCTTCTCTGATCAAATGGATTGTTCATTCATAAGC-AGAGACGATCTCCAAAG  59
            |||||||||||||||||||||||||||||||||||||||| | | | ||||||||| |||
Sbjct  72   AAACTACCCTTCTCTGATCAAATGGATTGTTCATTCATAA-CTACAAACGATCTCCGAAG  130

Query  60   AATGTTCAAGAAGCTCGACAAGAACCAAGACGGGCTTGTGACCCTCGACGAGCTCCACTG  119
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  131  AATGTTCAAGACGCTCGACAAGAACCAAGACGGGCTTGTGACCCTCGACGAGCTCCTTTG  190

Query  120  GATTCTTGAGAAACTCGGTTGGCCCGAACACACTCCCGATGAGCTTGAACTGATCGTTGG  179
            ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  191  GATTCTTGATAAACTCGGTTGGGCCGAACACACTCCCGATGAGCTTGAACTGATCGTTGG  250

Query  180  AAAACAGAGCCTCGATATAGACGAGTTTCTTCGGTTCTACAACGACGCCGTTTTAGATAG  239
             ||||||||||||||| |||||||||| |||||||||||| ||||||| |||||||||||
Sbjct  251  TAAACAGAGCCTCGATTTAGACGAGTTCCTTCGGTTCTACTACGACGCTGTTTTAGATAG  310

Query  240  CAAAGGA---ACGAAG-A-A--GA--------C---TACTGATGAAGCGATTGCGAGGGC  281
            |||||||   | |||| | |  ||        |   || |||||||||||||||||||||
Sbjct  311  CAAAGGATCTAAGAAGAATATTGATGTTGTTGCTGATAATGATGAAGCGATTGCGAGGGC  370

Query  282  GTTTAGTGTGTTTGATGTGAACGGAGATGGTTATATTTCTGCTGAGGAGCTTCGTGATGT  341
            ||||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  371  GTTTAATGTGTTCGATGTGAACGGAGATGGTTATATTTCAGCGGAGGAGCTTCGTGATGT  430

Query  342  GTTGGAACGGCTAGGGTTCGAGGAGGAGGCAAGGGCTTGGGATTGTGGGAGAATGATACG  401
            |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||
Sbjct  431  GTTGGAACGGCTAGGGTTTGAGGAGGAGGCAAAGGCTTGGGATTGTGGGAGAATGATTCG  490

Query  402  AGTTCATGACAAGAATCTTGATGGTTTCGTTGACTTTGAAGAATTCAAGAACATGATCTT  461
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  491  AGTTCATGACAAGAATCTTGATGGTTTTGTTGACTTTGAAGAATTCAAGAACATGATCTT  550

Query  462  ACATGTCTAATGATGATAATACACATGTAACATGTGTGCGTATAGTCCATTTACATGTTT  521
            ||||||||||||||| | |||||||||| ||||||||| |||  |||| |||||||||||
Sbjct  551  ACATGTCTAATGATGGTGATACACATGTGACATGTGTGTGTA--GTCCTTTTACATGTTT  608

Query  522  GATGTGTT  529
            ||||||||
Sbjct  609  GATGTGTT  616


 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  575  TTTGGTAATGAAATGGCTCTTCTCACTAA  603
            |||||||||||||||||||||||||||||
Sbjct  716  TTTGGTAATGAAATGGCTCTTCTCACTAA  744



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29035336966


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5