BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472396
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21600.1 | Symbols: PTAC6 | plastid transcriptionally active... 1624 0.0
> AT1G21600.1 | Symbols: PTAC6 | plastid transcriptionally active
6 | chr1:7571185-7573846 REVERSE LENGTH=1380
Length=1380
Score = 1624 bits (879), Expect = 0.0
Identities = 995/1050 (95%), Gaps = 12/1050 (1%)
Strand=Plus/Plus
Query 1 TTT-CTCGAAATATCTAATCCACAG-T---TAGAACACTCT-TGAGCTTTATCCGCTTCC 54
||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 4 TTTCCTCGAAATATCTAATCCACAGATAGATAGAACACTCTGTGAGCTTTATCCGCTTCC 63
Query 55 CATGGCGTCAACCGCCGCTTCTCCTTCCTTATCTCTACTCTCATTCACCTCGAAACCACC 114
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 64 AATGGCGTCTTCCGCCGCTTCTCCTTCCTTATCTCTACTCTCATTCACCTCGAAGCCACC 123
Query 115 GTCTTCCTCCGCCACGCAGCGGCTATTTGCGTCATTCAGAACGGACGG-CGGTTTCGCGC 173
| | |||||| | | |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 124 TTATCCCTCCGGCTCTCAGCGGCTATTTGCGTCATTCAGAACGGACGGTC-TTTTCGCGC 182
Query 174 CTTTAACACTCAAATCCCGACGCGGCCGTGGTTTCA-TCGTTAAAGTAGACGACGTCGAT 232
|||||||||| ||||||||||||||||||||| | | ||||||||||||| |||||||||
Sbjct 183 CTTTAACACTGAAATCCCGACGCGGCCGTGGTAT-AGTCGTTAAAGTAGATGACGTCGAT 241
Query 233 GCTGATGGAGGTGGACCGGACGAGTACGACATGGATGATGAGGAAGTAGAGGAAGTTGAC 292
||||||||||||||| |||||||||| || |||||||||||||| |||||||||||||||
Sbjct 242 GCTGATGGAGGTGGAGCGGACGAGTATGATATGGATGATGAGGAGGTAGAGGAAGTTGAC 301
Query 293 AACAAGAAGGACTATGACGTTGAGTACGACCCCTTGGCCGCAGCGATGGCGGCTGCAGGC 352
||||||||||||||||| || ||||| |||||||||||||| ||||| || |||||||||
Sbjct 302 AACAAGAAGGACTATGATGTCGAGTATGACCCCTTGGCCGCCGCGATAGCCGCTGCAGGC 361
Query 353 GGTGGTGGTGATGGAGATATCGCTTTTGTTCAGAGTAAGAGTTTTATATCGACACAGGGA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 GGTGGTGGTGATGGAGATATCGCTTTTGTTCAGAGTAAGAGTTTTATATCGACACAAGGA 421
Query 413 TGGGATTCGGAGATGGTGGTGGATTATCGGATAAACGAAGATGAGTTTCATAAAATCAGC 472
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 422 TGGGATTCGGATATGGTGGTTGATTATCGGATAAACGAAGATGAGTTTCATAAACTCAGC 481
Query 473 TTAATGGACTGTGATTTCTTTATCAGAAAACCTCCTGATCCAGATAACGATGTTTATGAT 532
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 482 TTAATGGACTGTGATTTCTTTATCAGAAAACCTCCTGATCCAGATAATGATGTTTATGAT 541
Query 533 TTCAGAGAGATGTATGTAACTCCTCCTGATACAGATATTTACTCAATTCCGAGAGTTCTT 592
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 542 TTCAGAGAGATGTATGTTACTCCTCCGGATACAGATATTTACTCAATTCCGAGAGTTCTT 601
Query 593 GCACCAATGCCTCAAAAGTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTC 652
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GCACCGATGCCTCAAAAGTATATTCGATGTGCAATGAGTGACTATGGATGTTACAATGTC 661
Query 653 ACCGAACCACCTATTGATGCTCCCC-GGGATCCACTGTACAAATCTGAGAGGGAGATATC 711
|| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 662 ACTGAACCACCTATTGATGC-CCCCAGAGATCCACTGTACAAATCTGAGAGGGAGATATC 720
Query 712 CAAGGTTTTCTTGACAAAGCATTACCGGAACAGAAGGACAAACGACCCAGAATTTGTGCT 771
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 CAAGGTTTTCTTGACAAAACATTACCGGAACAGAAGGACAAACGATCCAGAATTTGTGCT 780
Query 772 AGATCTTGAAGAGATCTATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGT 831
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATCTTGAAGAGATATATGTTATTGATTCCAAGACAAAGTCAATCACCAGAGCCAGAGT 840
Query 832 TCTGGTGACAGTTCCGGGAGGAAGAAAAAGAGATAGGAAGGATGACTTGCTCGTGATACG 891
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 841 TCTGGTGACAGTTCCGGGAGGAAGAAAAAGGGATAGGAAGGATGACTTGCTTGTGATACG 900
Query 892 AGATAATGGAACCTCCTTTAAGATCATACACGTGGGTGAAAGAGATGACCCAACAACGGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AGATAATGGAACCTCCTTTAAGATCATACACGTGGGTGAAAGAGATGACCCAACAACGGT 960
Query 952 AATAGAGAGGGAAGAGTGGACCAAGACCCGAGAAGACATGGAGAAACATCTCAGGAAGCT 1011
|||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 AATAGAAAGAGAAGAGTGGACCAAGACTAGAGAAGACATGGAGAAACATCTCAGGAAGCT 1020
Query 1012 ACGAGACTTCAGTGTCTCAAATTGGTTCTA 1041
||||||||||||||||||||||||||||||
Sbjct 1021 ACGAGACTTCAGTGTCTCAAATTGGTTCTA 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5