BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472404
Length=1949
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21660.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 2819 0.0
> AT1G21660.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:7605699-7609065 FORWARD LENGTH=2027
Length=2027
Score = 2819 bits (1526), Expect = 0.0
Identities = 1760/1869 (94%), Gaps = 32/1869 (2%)
Strand=Plus/Plus
Query 96 GATC-GATCTGGGAAATCGTGAAA-TCGTTTGTGttttttttttGCTCGATTAATCGGAG 153
|||| ||| |||| ||||||||| ||||||||| |||| ||||||||||| |||||
Sbjct 169 GATCTGAT-TGGGGGATCGTGAAATTCGTTTGTG----TTTTCTGCTCGATTAACCGGAG 223
Query 154 AAATGGACGAGTTTGGTGTTCTTACGGAGCGTTATGGGATTAAACCACAAGGTAAATCTG 213
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 224 AAATGGACGAGTTTGGTGTTCTAACGGAGCGTTATGGGATTAAGCCACAAGGTAAATCTG 283
Query 214 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 CTCCGATGGCTGCTTCTAAGCGTAACCCTAACAACAATGGTCAGAGCTGGAATTTCGGTA 343
Query 274 CAGG---CTCTGGTCTAAATGCAAAGTCGACGTCTTTTTCTTCGAATAGCTCTTGGAATA 330
|||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 344 CAGGCTCCTCTGGTTTAAATGCAAAGTCGACGTCTTTTTCTTCCAATAGCTCTTGGAATA 403
Query 331 AGGAATCTACTAATGGGTCTTTGTATGATGGTGACGACATTTTCTTTCCGGCTAACTCTA 390
|||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 404 AGGATTCTACTAATGGGTCTTTGTTTGATGGTGACGATATTTTCTTTCCGGCTAACTCTA 463
Query 391 CTAATAGGAATGG-TTCGAATGATTTCGATGTTTTTTCTGGGTTGAAAAAATCATCATCT 449
|||||||||| || |||||||||||| ||||||||| |||||||||| ||||| ||||||
Sbjct 464 CTAATAGGAA-GGTTTCGAATGATTTTGATGTTTTTGCTGGGTTGAACAAATCTTCATCT 522
Query 450 TCCGGTGATAATAGCAAGTCGTCTTTGAACGATGATTTGTTGTTCTCTAATTTTGGGAAT 509
|||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||
Sbjct 523 TCCGGTGATAATAGCAAGTCTTCATTGAACGATGATTTGTTCTTCTCCAATTTTGGGAAT 582
Query 510 TTGGGAAAGA-AA--ACTTC-TGATGATGATGATTTGTTTGGTGGTGTTATGCCTGGGTC 565
||| |||| || |||| | | | |||||| ||||||||||||||||| ||||||||
Sbjct 583 CCGGGGAAGACAACTCCTTCTTCA-GCTGATGACTTGTTTGGTGGTGTTATTCCTGGGTC 641
Query 566 TAAAACCTCCGCTAGTGTTAAGAATGATGATTTGTTTGGGTCCTTCTCTTCATCGGAAAA 625
||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 642 TAAAAGCTCTGATAGTGTTAAGAATGATGATTTGTTTGGGTCATTCTCTTCATCGGAGAA 701
Query 626 GCAATATGCTGCTGCGGTCGATGATTTGTTGGG---AGGGAAGAATGAAGCTGGTTATGA 682
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 702 GCAATATGCTGCTGCGGTTGATGATTTGTTGGGTTTGGGGAAGAATGAAGCTGGTTATGA 761
Query 683 TGGATTGATACCTGGTTTTGGTGCAAGTACTCAGACGACTATCAGCAAGACTGCTCCGTC 742
||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||
Sbjct 762 TGGATTGATACCTGGTTTTGGTGGAAGTACTCAGACGACTAGCAGCAAGACTACACCGTC 821
Query 743 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGATCTGTT 802
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 822 GAACTTTGATGCTACTGATCCTTTTGTGGTCCTAGAATCAACCACTTCTACTGGTCTGTT 881
Query 803 CGTGGATCCTCTTGAAGAATTTGCTGCTTCAGTCATTTCTCAGGGGaaaaaaaCATCAAA 862
|||||||||||||||||||||||||||| |||||| |||||||||| |||| |||||||
Sbjct 882 CGTGGATCCTCTTGAAGAATTTGCTGCTACAGTCAGCTCTCAGGGGATAAAACCATCAAA 941
Query 863 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACCCAAAAAGTGAACAG 922
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 942 TACTTCACATACTTCTACAAAACTCAAGCCTCCGCCTAAACCAACACAAAAAGTGAACAG 1001
Query 923 AGGTAAGAGTGTAGAAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGAACAAT 982
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1002 AGGTAAGAGTGTAGGAATGTCTTCAATAGACGAACTTGAAGACTTTGCCATGGGTACTAT 1061
Query 983 GCGACGTAGTGCCTCTGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATACTGG 1042
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1062 GCGACGTAGTGCCTCCGCTTCTGACACTGCTAGTAAATATAGAGAAGCTGAAGATGCTGC 1121
Query 1043 AACAAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCTGGACCGAG 1102
||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1122 AACGAAGAATAAACAGTTTGGTGTAGATGACCTTGACTCCTTTTTTAGCGCT----C--G 1175
Query 1103 GTCTAGCAGTGTACCGAAATCACGTACCACAACTGAAACAACTCGCAAGCAAGCGTCCAA 1162
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1176 GTCCAGCAGTGTACCGAAATCACGTACCACTACTGAAACAACTCGCAAGCAAGCGTCCAA 1235
Query 1163 CACGCCAAAAAAGACGCCTAATGGGGTTTCTAAGGCAAAGAAGCCTCCTGCTCCAGCAAA 1222
| | ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1236 CGCACCAAAAAAGACCCCTAATGGGGTTTCTAATGCAAAGAAGCCTCCTGCTCCAGCAAA 1295
Query 1223 TCTGGTGGATGACTTTTCTGCACTCTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1282
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1296 TCTGGTGGATGACTTTTCTGCACTTTTTGGAGAGGATCCTATATTTAGACAATTTGAGGA 1355
Query 1283 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AATCCCAGGGGAAAGCGAAGAACGAAGAAAGGCCAGATGGGATCGTGAACAGAGAACAAA 1415
Query 1343 GAGCCGTGTGGCACAAGCTGTTGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1402
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1416 GAGTCGTGTGGCTCAAGCTGTAGCTGATATGAATAACCGTGATCATCAATCTCGGATTGA 1475
Query 1403 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATGCTGAGATAAGGCGTTGGGCAAC 1462
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1476 ACAAGAACAGAGAACTAGGATTTCTGAGACTGTTGATACTGAGATAAGGCGTTGGGCAAC 1535
Query 1463 TGGTAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCAAATCGTACTCTGGCCCGG 1522
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1536 TGGAAAAGAAGGAAACATGCGTGCGCTGTTATCTTCCTTGCACATCGTACTCTGGCCCGG 1595
Query 1523 ATGTGGTTGGGAGACTGTTTCTC-TAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1581
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1596 ATGTGGTTGGGAGGCTGTTTC-CATAACAGATTTGATCACTTCGTCAGCAGTCAAGAAAG 1654
Query 1582 TCTATAGAAAGGCAACGCTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1641
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1655 TCTATAGAAAGGCAACACTGTATGTCCATCCCGATAAAGTTCAGCAGAAAGGAGCCACCC 1714
Query 1642 TTGAACAAAAGTATATTGCTGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1701
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TTGAACAAAAGTATATCGCCGAAAAGGTTTTTGACATTTTGAAGGAAGCTTGGAACAAGT 1774
Query 1702 TCAACAAGGAGGAGCTCTCTTAAGCCCATATGCTGTGGATATAGTTGCTTTCTGTACAAC 1761
||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1775 TCAACAAGGAGGAGCTCTCTTAAGCCCATATACTGTGAATATAGTTGCTCTCTGTACAAC 1834
Query 1762 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTTATCTTCTTGTCTCTGAT 1821
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 1835 TATAATTCGTCTGTGAGTTTCCTCGAGTCTTTTCTTGTTTTTAATCTTCTTGTTTATGAT 1894
Query 1822 TTTT-CCTTTGACGGTAACTTGTCATCATTCTGTACACCCAACAACAACAAAAATCCATG 1880
|||| |||||||| ||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 1895 TTTTTCCTTTGACCGTAACTTGTCATCTTTCTGTACACCCAACAACAA-AAA--TCCATG 1951
Query 1881 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GGGGATATTGTATAGCCCCAAAAACCGAAATAGAGTTTCTTTTTATAAGATATATATTGA 2011
Query 1941 ATGTTTTTA 1949
|||||||||
Sbjct 2012 ATGTTTTTA 2020
Score = 67.6 bits (36), Expect = 4e-10
Identities = 39/40 (98%), Gaps = 1/40 (3%)
Strand=Plus/Plus
Query 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTA-AGAGAGA 39
|||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ACACCGTCGGTGCCCTCACGGATCAATTTCTAGAGAGAGA 40
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96535648035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5