BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472406
Length=2273
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21680.1 | Symbols: | DPP6 N-terminal domain-like protein |... 3262 0.0
> AT1G21680.1 | Symbols: | DPP6 N-terminal domain-like protein
| chr1:7613005-7615339 FORWARD LENGTH=2335
Length=2335
Score = 3262 bits (1766), Expect = 0.0
Identities = 2076/2227 (93%), Gaps = 16/2227 (1%)
Strand=Plus/Plus
Query 1 CCGCCATGAATAT-TGCTCAGATTATCTTCCTCGCGTCCCTTCTGCTACCACTTCACGCA 59
||||||||||||| | |||||||||| ||| ||||||||||||| |||| |||||| |
Sbjct 19 CCGCCATGAATATAT-CTCAGATTATTTTCTTCGCGTCCCTTCTTCTACGGCTTCACTTA 77
Query 60 TCAACTTTGGAACATCAGAATTCGAACGCTGGTGATGGAGACACCATCATATTCACCACT 119
||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 78 TCAACGGCGGAACATCAAAATTCAAACGCTGGTGATGGAGACACCATCATATTCACCACT 137
Query 120 CTAGGACGATCGCGCTACGAATTCGACATATTCTCCCTCTCAACGACTCATCCACCGTCC 179
||||||||||||| ||||||||| ||||||||| ||||||| |||||||| || |||||
Sbjct 138 CTAGGACGATCGCACTACGAATTTGACATATTCGCCCTCTCCACGACTCAACCGCCGTCA 197
Query 180 GATTCC-AACGAGCTCCGTATCACCGATGGAGAATCGGTAAACTTCAACGGCTATTTCCC 238
| |||| | |||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 198 GTTTCCGGA-GAGCTCCGAATCACCGATGGGGAATCGGTAAATTTCAACGGCTATTTCCC 256
Query 239 GTCTCCTTCTCCGGCGCTCA-TCTCTCTCCTTCCTGACGAAACCCTAATTCAACTTGAAG 297
||||||||||||||| || | | ||||||||||| |||||||||||||||||| | ||||
Sbjct 257 GTCTCCTTCTCCGGCTCT-ATTATCTCTCCTTCCCGACGAAACCCTAATTCAAATGGAAG 315
Query 298 ATTCGTCTCCTCTGCATCTCATCTACGTCACCGAGAGAAACGGTACTTCTAGCATATACT 357
|||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 316 ATTCGTCTCCTCTGCATCTCATATACGTCACCGAGAGAAACGGTACTTCTAGCTTGTACT 375
Query 358 ACGATCTAATTTACGGCGGCGACTCCGATTCTAAAATGAAACGACGATCGGTGTTAGAAG 417
|||||||| |||||||||| | || |||| ||||| ||||||| |||||||||||||||
Sbjct 376 ACGATCTAGTTTACGGCGGTAATTCTGATTTTAAAACGAAACGAAGATCGGTGTTAGAAG 435
Query 418 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCGGCTTTGATCATCGGAGTGGCATGACGG 477
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 436 CACCGTCTCGAGTCCAAGTTCCGTTGTTATCCCGCTTTGATCATCTGAGTGGCATGACGG 495
Query 478 TAAATTCATTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTCTTGTCTACGTGTCAACTC 537
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 496 TAAATTCTTTTAAAGATAAGCCTAGTTTGAGTGGTGAGTTTATTGTCTACGTGTCAACCC 555
Query 538 ACGAAAACTCAGGTGAGCCGAGAACAAGCTGGACCGCCGTTTACTCTACCGAGTTGAGAA 597
| || | |||||||||||||||| ||||||||||||||||||||||||||||||| | ||
Sbjct 556 ATGAGAGCTCAGGTGAGCCGAGAGCAAGCTGGACCGCCGTTTACTCTACCGAGTTAAAAA 615
Query 598 CTGGGTTAACCCGGCGGTTAACACCGAGTGGTGTAGCTGATTTTAGCCCGGCGGTGTCGC 657
| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 616 CCGGGTTAACCAGGCGGTTAACACCGAGTGGTGTAGCTGATTTCAGCCCGGCGGTATCGC 675
Query 658 CTTCCGGAAATTTAACAGCCGTGGCTTCGTACGGAGAGAGAGGCTGGACAGGGGAAGTTG 717
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 676 CTTCCGGAAATTTAACGGCTGTGGCTTCATACGGAGAGAGAGGCTGGACAGGGGAAGTTG 735
Query 718 AAGAGCTTA-GTACGGACATATATGTATTCTCGACTCGGGATGGGACTCACCGAGTCAAG 776
|||||| || |||||||||| |||||||||| ||||||||||||| ||||||| ||||||
Sbjct 736 AAGAGC-TACGTACGGACATCTATGTATTCTTGACTCGGGATGGGTCTCACCGTGTCAAG 794
Query 777 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTCGATGAGTCGACTCTGTATTTCCATAGA 836
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 795 GTGGTGGAGCACGGTGGTTGGCCGTGTTGGGTTGATGAGTCGACTCTGTATTTCCATAGA 854
Query 837 AGAAGCGAGGAGGATGGTTGGATCAGCGTTTACCGAGCTATCTTACCTGAAAACGGACCG 896
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 855 AGAAGTGAGGAGGATGGTTGGATCAGCGTTTACCGAGCCATCTTACCTGAAAACGGACCG 914
Query 897 TTGACTACAGAGTCAGTGACTATACAACGAGTCACACCACCGGGAGTTCACGCTTTTACA 956
|||||||| ||||| ||||| || || ||||||||||||||||||||||||||||| |||
Sbjct 915 TTGACTACTGAGTCGGTGACAATTCAGCGAGTCACACCACCGGGAGTTCACGCTTTCACA 974
Query 957 CCTGCCACGTCACCAAACAACCACGAGTTCATAGCGGTGGCGACGAGGAGACCAGGCTCG 1016
|| ||||||||||||||||||||||||||| | ||||| || || |||||||||||||||
Sbjct 975 CCGGCCACGTCACCAAACAACCACGAGTTCGTTGCGGTAGCTACAAGGAGACCAGGCTCG 1034
Query 1017 GATTACCGCCACGTGGAGTTGCTTGATCTACAGAGGAATGAGTTTATTGAGCTGACTCGT 1076
||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||
Sbjct 1035 GATTACCGCCACGTGGAGTTGTTTGATCTAAAGAGGAATGAGTTTATAGAGTTGACTCGT 1094
Query 1077 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCGTTCTTGTCCCCTGATTCGTCTCGAGTC 1136
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1095 TTGGTGGCGCCAAAGAGTCATCACTTGAATCCATTCTTGTCCCCTGACTCGTCTCGAGTC 1154
Query 1137 GGATACCATAGTTGTAGAGGCGAGGCTAACGGACGGAGAAGTCCTCTGCTTTTTCTAGAG 1196
||||| ||||||||||||||||| ||||| |||||||||||||||||||| || || ||
Sbjct 1155 GGATATCATAGTTGTAGAGGCGATGCTAATGGACGGAGAAGTCCTCTGCTCTTCCTTGAA 1214
Query 1197 AATATACAAACCACTACAAGGGACCTCTCTCTCTTTAGAATCGATGGTTCGTTTCCTTCC 1256
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1215 AATATTCAAACCACTACAAGGGACCTCTCTCTCTTTAGAATTGATGGTTCGTTTCCTTCG 1274
Query 1257 TTCTCACCTGGAGGTGATCGTATTGCATACGTCAAAATGCCTGGTGTATTTGTGGTGAAG 1316
||||||||||||||||||||||| |||||||| || ||||||||||| ||||||||||||
Sbjct 1275 TTCTCACCTGGAGGTGATCGTATCGCATACGTTAAGATGCCTGGTGTGTTTGTGGTGAAG 1334
Query 1317 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAACGGAATGGCGTTTTCGACGGCTTGGGAT 1376
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1335 CCGGATGGTTCAGGGCAGCGTGAAGTGTACAAGGGAATGGCGTTTTCGACAGCTTGGGAT 1394
Query 1377 CCGGTTCGACCTGGAGTTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1436
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 CCGGTTCGACCTGGAATTGTGTACTCTAGCTCAGGTCCAACGTTTGCTACAGAGAGAACA 1454
Query 1437 GAGGTTGATGTCATCTCTATTGAAGTCGATGCAGCTGACAAGTCATCTTCCGTGAGGAGG 1496
||||||||||| ||||||||||| || |||||||| || |||||||||||||||||||||
Sbjct 1455 GAGGTTGATGTTATCTCTATTGACGTTGATGCAGCCGATAAGTCATCTTCCGTGAGGAGG 1514
Query 1497 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCGGATGGTAAGCGGATA 1556
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1515 CTAACGACAAACGGGAAGAACAATGCTTTCCCTTGGCCATCTCCTGATGGTAAGCGGATA 1574
Query 1557 GTGTTTCGTTCGGGCCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGC 1616
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 GTGTTTCGTTCGGGGCGGACTGGTCACAAAAACCTCTACATAATGGATGCTGAGAAAGGA 1634
Query 1617 GAAAGAGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACTGACACAATGTGTAACTGG 1676
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1635 GAAAGCGGTGGTCTATGGAGGTTAACCGAAGGTGCGTGGACCGACACAATGTGTAACTGG 1694
Query 1677 TCACCGGATGGGGAATGGATCGCGTTTGCATCCGATCGAGAAAGCCCTGGCTCGGGTAGT 1736
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1695 TCACCGGATGGGGAATGGATCGCGTTTGCATCAGATCGAGAAAGCCCTGGCTCGGGTAGT 1754
Query 1737 TTCGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTTAGGAAACTCATCCAAAGCGGG 1796
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1755 TTTGAGCTCTTCTTGATCCACCCCAACGGAACAGGGTTAAGGAAGCTCATCCAAAGCGGG 1814
Query 1797 ACAGGTGGGAGAACAAACCACCCAATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACA 1856
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1815 ACGGGTGGGAGAACAAACCACCCGATCTTCAGCCCGGACAGTAAATCATTAGTCTTCACT 1874
Query 1857 TCTGATTATGCTGGGATCTCAGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1916
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1875 TCTGATTATGCTGGAATCTCGGCGGAACCGATCTCGAACCCGCATCATTACCAGCCATAC 1934
Query 1917 GGTGATATCTTCACGGTGAAATTAGATGGCTCAAATTTGAGGAGGCTGACGCATAACTCT 1976
|||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||
Sbjct 1935 GGTGATATCTTCACGGTGAAATTAGATGGCTCTAATGTGAGGAGGCTAACGCATAACTCT 1994
Query 1977 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCGAACAATGTGGTGCTG 2036
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1995 TATGAAGATGGGACACCGGCATGGGCCCCTCGGTTCATCCACCCCAACAATGTGGAGCTA 2054
Query 2037 CAAAGGAGGAACGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTAAACAAGTACCCT 2096
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2055 CAAAGGAGGAATGATTCTAGGTGCTCGTTCGAAGACTGTCACTGGCTCAACAAGTACCCT 2114
Query 2097 ACACTAAAAGGCCGAAAAATCTCTTGTTAATATGTATGATTAGAACAGAAATGTATCCCA 2156
|||||||||||||||||||| |||||||||||||||| | | ||| |||||||||
Sbjct 2115 ACACTAAAAGGCCGAAAAATATCTTGTTAATATGTATC-T-A---CAGTTTTGTATCCCA 2169
Query 2157 GCTTGTAACTCTACTACTTATATATTTGTATGAGACTGCCAATGTATATGTATAAGACTT 2216
||||||||||||||| | ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 2170 GCTTGTAACTCTACT--T-ATAGATTTGTATGAGACTGCCACTGTATATGCATAAGACTT 2226
Query 2217 TGTATTA 2223
|||||||
Sbjct 2227 TGTATTA 2233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112800624615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5