BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472407 Length=1162 Score E Sequences producing significant alignments: (Bits) Value AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with ... 1646 0.0 > AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with various cellular activities (AAA) | chr1:7615614-7618566 FORWARD LENGTH=1232 Length=1232 Score = 1646 bits (891), Expect = 0.0 Identities = 940/964 (98%), Gaps = 2/964 (0%) Strand=Plus/Plus Query 1 AAAATTAGaaaaaaaaaaaGGCGAAG-A-AGAGAGGAATGGCGCCAGTTCTTCAGAGCTC 58 |||||||||| |||||| |||||||| | ||||||||||||||||||||||||||||||| Sbjct 25 AAAATTAGAAGAAAAAAGAGGCGAAGAAGAGAGAGGAATGGCGCCAGTTCTTCAGAGCTC 84 Query 59 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 118 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 144 Query 119 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCTCACATGCTCTTCTA 178 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 145 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCGCACATGCTCTTCTA 204 Query 179 TGGACCGCCGGGCACTGGAAAAACCACTACTGCACTTGCCATCGCCCACCAGCTCTTTGG 238 |||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 205 TGGACCACCAGGCACTGGAAAAACCACTACTGCTCTTGCCATCGCTCACCAGCTCTTTGG 264 Query 239 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTGAATGCAAGTGATGACAGAGGCATTAA 298 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 265 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAA 324 Query 299 TGTTGTTCGGACAAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 358 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 325 TGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 384 Query 359 AAGCGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 418 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 385 AAGTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 444 Query 419 AGAAGATGCTCAGAACGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 478 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 445 AGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 504 Query 479 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 564 Query 539 GTTCAGGTTTAAACCACTTTCTGAAGAAGTAATGAGTAACCGTATATTGCATATTTGTAA 598 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 565 GTTCAGGTTTAAACCACTTTCCGAAGAAGTCATGAGTAACCGTATATTGCATATTTGTAA 624 Query 599 TGAAGAAGGTCTCAGCCTTGGTGGAGAGGCTCTTTCAACTTTGAGCTCTATATCACAAGG 658 |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 625 TGAAGAAGGTCTCAGCCTTGATGGAGAGGCTCTTTCAACTTTGAGCTCCATATCACAAGG 684 Query 659 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 744 Query 719 AACTTCTACAGATTTACTCGATGTGTCTGGGGTAGTTCCCCTGGAGGTAGTCAATAAGCT 778 ||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| || Sbjct 745 AACTTCTACAGATTTACTCAATGTGTCTGGGGTAGTTCCTCTAGAGGTAGTCAATAAACT 804 Query 779 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 864 Query 839 TGCAGAAGGATATCCGGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 898 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 865 TGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 924 Query 899 TGACTGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 958 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 925 TGACAGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 984 Query 959 TAAG 962 |||| Sbjct 985 TAAG 988 Score = 178 bits (96), Expect = 1e-43 Identities = 132/148 (89%), Gaps = 7/148 (5%) Strand=Plus/Plus Query 1016 TACAATTCT-TGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATCCTGCTTGATTT 1074 ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 989 TACAATT-TGTGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATTCTGCTTGAATT 1047 Query 1075 GGACCTTTTCCTTATGACTTATGAGACTGTCATAGTTTAGGTTTTGATaaaaaaaaaaGT 1134 |||||| | ||||| ||||||||||||| ||||||| |||||||||||||||| || Sbjct 1048 GGACCTGTGCCTTAAGACTTATGAGACTATCATAGTGTAGGTTTTGATAAAAA-----GT 1102 Query 1135 TGGAGCATTATGACGTTTTTCTGGTTAC 1162 |||||| |||||||||||| |||||||| Sbjct 1103 TGGAGCGTTATGACGTTTTACTGGTTAC 1130 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57027819120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5