BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472407
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with ... 1646 0.0
> AT1G21690.3 | Symbols: EMB1968 | ATPase family associated with
various cellular activities (AAA) | chr1:7615614-7618566
FORWARD LENGTH=1232
Length=1232
Score = 1646 bits (891), Expect = 0.0
Identities = 940/964 (98%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 1 AAAATTAGaaaaaaaaaaaGGCGAAG-A-AGAGAGGAATGGCGCCAGTTCTTCAGAGCTC 58
|||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 25 AAAATTAGAAGAAAAAAGAGGCGAAGAAGAGAGAGGAATGGCGCCAGTTCTTCAGAGCTC 84
Query 59 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 ACAGCCATGGGTTGAGAAATACCGGCCGAAGCAGGTTAAGGACGTGGCTCACCAGGAAGA 144
Query 119 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCTCACATGCTCTTCTA 178
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 145 GGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACTGCCCGCACATGCTCTTCTA 204
Query 179 TGGACCGCCGGGCACTGGAAAAACCACTACTGCACTTGCCATCGCCCACCAGCTCTTTGG 238
|||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 205 TGGACCACCAGGCACTGGAAAAACCACTACTGCTCTTGCCATCGCTCACCAGCTCTTTGG 264
Query 239 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTGAATGCAAGTGATGACAGAGGCATTAA 298
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 265 ACCTGAACTATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAA 324
Query 299 TGTTGTTCGGACAAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCA 384
Query 359 AAGCGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 418
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 AAGTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGAC 444
Query 419 AGAAGATGCTCAGAACGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGAAGATGCTCAGAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCACCAGATT 504
Query 479 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CTTTTTCATATGTAATTACATCAGCAGGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAA 564
Query 539 GTTCAGGTTTAAACCACTTTCTGAAGAAGTAATGAGTAACCGTATATTGCATATTTGTAA 598
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 565 GTTCAGGTTTAAACCACTTTCCGAAGAAGTCATGAGTAACCGTATATTGCATATTTGTAA 624
Query 599 TGAAGAAGGTCTCAGCCTTGGTGGAGAGGCTCTTTCAACTTTGAGCTCTATATCACAAGG 658
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 625 TGAAGAAGGTCTCAGCCTTGATGGAGAGGCTCTTTCAACTTTGAGCTCCATATCACAAGG 684
Query 659 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 TGATCTCCGTAGGGCCATCACATATCTGCAGAGTGCTACTCGGTTGTTTGGATCAACAAT 744
Query 719 AACTTCTACAGATTTACTCGATGTGTCTGGGGTAGTTCCCCTGGAGGTAGTCAATAAGCT 778
||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||
Sbjct 745 AACTTCTACAGATTTACTCAATGTGTCTGGGGTAGTTCCTCTAGAGGTAGTCAATAAACT 804
Query 779 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TTTTACTGCATGCAAAAGTGGTGATTTCGATATTGCAAACAAGGAAGTGGATAACATAGT 864
Query 839 TGCAGAAGGATATCCGGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 898
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 TGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGCTATTCGATATAGTTGCGGAGGC 924
Query 899 TGACTGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 958
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TGACAGTGACATAACAGACATGCAAAAGGCTAAGATCTGCAAATGTTTAGCTGAAACTGA 984
Query 959 TAAG 962
||||
Sbjct 985 TAAG 988
Score = 178 bits (96), Expect = 1e-43
Identities = 132/148 (89%), Gaps = 7/148 (5%)
Strand=Plus/Plus
Query 1016 TACAATTCT-TGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATCCTGCTTGATTT 1074
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 989 TACAATT-TGTGCCCTCTCAGAAATGGCTCAAGACTTCTAATGCAAATTCTGCTTGAATT 1047
Query 1075 GGACCTTTTCCTTATGACTTATGAGACTGTCATAGTTTAGGTTTTGATaaaaaaaaaaGT 1134
|||||| | ||||| ||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 1048 GGACCTGTGCCTTAAGACTTATGAGACTATCATAGTGTAGGTTTTGATAAAAA-----GT 1102
Query 1135 TGGAGCATTATGACGTTTTTCTGGTTAC 1162
|||||| |||||||||||| ||||||||
Sbjct 1103 TGGAGCGTTATGACGTTTTACTGGTTAC 1130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5