BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472409
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21695.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 767 0.0
> AT1G21695.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:7618940-7619919 FORWARD LENGTH=980
Length=980
Score = 767 bits (415), Expect = 0.0
Identities = 588/663 (89%), Gaps = 45/663 (7%)
Strand=Plus/Plus
Query 137 TAATGGTCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGA 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 TAATGGTCGATGGTGACGATTCTTTCAAGAGACCCGGAGCTGTGCCTTTTAAGTGGGAGA 250
Query 197 TCCGACCCGGTGTACCCAAAACCCGACCC-G-G-TGATG----A--TCTTCTT----CA- 242
|||||||||||||||| |||||||||||| | | ||||| | ||||||| ||
Sbjct 251 TCCGACCCGGTGTACCTAAAACCCGACCCGGTGATGATGATCCAGCTCTTCTTCAACCAC 310
Query 243 C-CCTCCTAACAAACTTCCTCCTGTCAAATTAAAACCATTTCCGCCGTCGAATTCGCCAT 301
| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 311 CTCCTCCTAACAAACTTCCTCCTCTCAAATTAAAATCAACTCCGCCGTCGAATTCGCCAT 370
Query 302 CT-C--CGTCTTC-GC--CTTTCTTCTCTGAATCCAGAAGCCGACCAGTCTCTCCCTTCG 355
|| | ||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTCCGTCGTCTTCTTCTTCTTTCTTCTCTGAATCCAGAAGCCGACCAGTCTCTCCCTTCG 430
Query 356 CTCCTCCTCCGTCGTCTTTCAAGCTCAAATCGCCTTCAGATTCCGACTCCAACTGTTCAG 415
||||||||||||| | || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 431 CTCCTCCTCCGTC-T-TT-CAAGCTGAAATCGCCTTCAGATTCCGACTCCAACTGTTCAG 487
Query 416 GCC-CTCCGACTCCATATTTCCGATCTTCTTCCCCTCGAGCCGGTGGTTCTTTCCCCCGG 474
| |||||||||||||||||||||||||||| ||||| |||||||| || || || |||
Sbjct 488 -CATCTCCGACTCCATATTTCCGATCTTCTTCTCCTCGTGCCGGTGGCTCATTGCCTCGG 546
Query 475 TGtttttttCCCAAGTCATTGTTTGGTTTGAAGAAGAGTAAGAGCGGCGATTTAAAAAAG 534
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 547 TGTTTTTTTCCCAAGTCATTATTTGGGTTGAAAAAGAGTAAGAGCGGCGATTTAAAAAAG 606
Query 535 ACCGGTCAG--G-AA---TCATC---------GGAGTCTGACAATTTCTATGAATCGGGA 579
||||||||| | || ||||| ||||||||||||||||||||||||||||
Sbjct 607 ACCGGTCAGCAGGAACCATCATCAACAACATCGGAGTCTGACAATTTCTATGAATCGGGA 666
Query 580 ACAACGTTTTCTCCGTCGGAAGA---TTCTAGCCACGGATCGGCAGTTTCTTCGAGGTGG 636
|||||| |||||||||||||||| ||||||||| |||||| | || ||||||||||||
Sbjct 667 ACAACGCTTTCTCCGTCGGAAGAAGATTCTAGCCAGGGATCGCCGGTATCTTCGAGGTGG 726
Query 637 GGTTCGCCGATATCATCCTTCTCTTCTCGCCGTGGTTCGCCGCTGAAACGGACTGATTCA 696
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 727 AGTTCGCCGAAATCGTCCTTCTCTTCTCGCCGTGGTTCGCCGCTAAAACGGACTGATTCG 786
Query 697 GATTTAAGCTCTTATGAGaaaaaaaCCATTTTAATGATGGCTCGTTCCCGCCTCGGTTAG 756
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 787 GATTTAAGCTCTTATGAGAAAAAAACCATGTTAATGATAGCTCGTTCCCGCCTTGGTTA- 845
Query 757 AAT 759
|||
Sbjct 846 AAT 848
Score = 185 bits (100), Expect = 5e-46
Identities = 127/138 (92%), Gaps = 10/138 (7%)
Strand=Plus/Plus
Query 1 ATAAATAAATAAAAATGCTGTCAAGACAC-AAATTCG-T---TG--A-A-TCTTCACATA 51
||||||||||||||||||||||||||||| ||||||| | || | | ||||||||||
Sbjct 1 ATAAATAAATAAAAATGCTGTCAAGACACAAAATTCGTTGAATGTTATAGTCTTCACATA 60
Query 52 GAACTGTCATAAATCTGGATACGTTCTAAAAATAATTGATCTAATCTAAATCTATAAGTA 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACTGTCATAAATCTGGATACGTTCTAAAAATAATTGATCTAATCTAAATCTATAAGTA 120
Query 112 GTTTCTTATTAGTAAGAA 129
|||||||||||||| |||
Sbjct 121 GTTTCTTATTAGTA-GAA 137
Score = 108 bits (58), Expect = 1e-22
Identities = 77/85 (91%), Gaps = 5/85 (6%)
Strand=Plus/Plus
Query 757 AATCAAATaaaaa-aaTATTTGAGTTTTTCATTGCGACAAGAACTAAT--GTACACATGT 813
||||||||||||| || |||||||||||||||||||||||||| ||| || ||||||
Sbjct 885 AATCAAATAAAAATGAT-TTTGAGTTTTTCATTGCGACAAGAACGAATATGTT-ACATGT 942
Query 814 AGATTTGTAATGAAATTGTCTATAT 838
|||||||||||||||||||||||||
Sbjct 943 AGATTTGTAATGAAATTGTCTATAT 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5