BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472410
Length=2709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose no... 4222 0.0
> AT1G21700.1 | Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose
nonfermenting 3C | chr1:7620001-7624136 REVERSE LENGTH=2737
Length=2737
Score = 4222 bits (2286), Expect = 0.0
Identities = 2608/2753 (95%), Gaps = 63/2753 (2%)
Strand=Plus/Plus
Query 1 AAAGAAATTGCGAGAAAAAGGTTTGGTGTTTAGCTCGAGAGCTAGAAATCAGAACGACTC 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAGAAATTGCGAGAAAAAGGTTTGGTGTTTAGCTCGAGAGCTGGAAATCAGAACGACTC 60
Query 61 GGAGCAGAGAAGACAAAGAAAGCAATTCTTTTTACTCAGGTTCTTGCTTTGATTCCACAG 120
|||| ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 61 GGAGGAGAGAAGACAAAGAAAGCAATTCTTTTTACTAAGGGTCTTGCTTCGATTCCACAG 120
Query 121 AACCCAAAACCTCTCTTTCTCTATCTTCACCCACAAGAATGCCAGCTTCTGAAGATAGAA 180
|||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 121 AACCCAAAACCTCTATTTCTCTATCTTCATCCACAAAAATGCCAGCTTCTGAAGATAGAA 180
Query 181 GAGGGAAATGGAAACGGAAGAAGCGAGGGGGATTATCGGCGGCGAGGAAACCgaaacaag 240
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 181 GAGGGAAATGGAAAAGGAAGAAGAGAGGGGGGTTATCGGCGGCGAGGAAACCGAAACAAG 240
Query 241 aggaggaagatatggaggaagaagaagaagagaat---aacaacaacaacgaagaaATGG 297
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 241 AGGAGGAAGATATGGAGGAAGAAGACGAAGAGAATAACAACAACAACAACGAAGAAATGG 300
Query 298 ATGACGTTGAAAATGCCGATGAGCTTCACCAAAACGGCGGCGCAACTCCCGATCCGGGAC 357
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 ATGACGTTGAAAATGCCGATGAGCTTCAGCAAAACGGCGGCGCAACTCCCGATCCGGGAC 360
Query 358 TTGGTATTGGCGAGGTAGTTGAAGATTCTGGTTCGCGCATCTCTGATTTCCCGGCAGTGG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGGTATTGGCGAGGTAGTTGAAGATTCTGGTTCGCGCATCTCTGATTTCCCGGCAGTGG 420
Query 418 TTAAGCGCGTTGTGATCCGGCCACACGCGTCTGTAATGGCTGTTGTGGCGGCTGAGAGAG 477
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTAAGCGTGTTGTGATCCGGCCACACGCGTCTGTAATGGCTGTTGTGGCGGCTGAGAGAG 480
Query 478 CTGGTTTGATTGGGGAGACTAGAGGGCAAGGTTTACTTCCAGCTCTGGAGAACATTTCGT 537
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 CTGGTTTGATAGGGGAGACTAGAGGGCAAGGTTCACTTCCAGCTCTGGAGAACATTTCGT 540
Query 538 TTGGGCAATTGCAAGCGTTATCTACTGTACCGGCTGA-T-TC----TC-T--------TG 582
||||||||||||||||||||||||||||||| ||||| | || || | ||
Sbjct 541 TTGGGCAATTGCAAGCGTTATCTACTGTACCTGCTGATTCTCTTGATCTTGAGAGGAGTG 600
Query 583 ATGGATCGTCTTCGGCTTATGTTATATCTCCACCACCTATTATGGAAGGAGAAGGAGTTG 642
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 ATGGATCGTCTTCGGCTTATGTTATCTCTCCACCACCTATTATGGATGGAGAAGGAGTTG 660
Query 643 TTAAACGCTTTGGGGATCTGGTTCATGTCTTGCCTATGCATTCAGATTGGTTTGCACCAA 702
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTAAACGGTTTGGGGATCTGGTTCATGTCTTGCCTATGCATTCAGATTGGTTTGCACCAA 720
Query 703 ACACAGTGGATCGACTTGAAAGGCAAGTGGTGCCACAATTTTTCTCTGGGAAATCGCCAA 762
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 721 ACACAGTAGATCGACTTGAAAGGCAAGTGGTGCCACAGTTTTTCTCTGGGAAATCGCCAA 780
Query 763 ATCATACACCCGAAAGTTATATGGAATTCAGGAACGCCATTGTTTCAAAATATGTGGAGA 822
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 781 ATCATACACCCGAAAGTTATATGGAATTCAGGAACGCCATTGTTTCCAAATATGTAGAGA 840
Query 823 ACCCTGAAAAGACACTGACGATTTCTGATTGCCAAGGATTGGTAGATGGTATTGACATCG 882
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 841 ACCCTGAAAAGACACTGACGATTTCTGATTGCCAAGGATTGGTAGATGGTGTTGACATTG 900
Query 883 AAGATTTTGCACGAGTTTTCCGTTTTCTTGATCACTGGGGAATAATCAATTACTGTGCCA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAGATTTTGCACGAGTTTTCCGTTTTCTTGATCACTGGGGAATAATCAATTACTGTGCCA 960
Query 943 CTGCCCAGTCACATCCTGGGCCTTCT-AGAGATGTATTGGATGTGAGGGAGGATACAAAT 1001
||||||||||||||||||| |||| | |||||||||| ||||||||||||||| ||||||
Sbjct 961 CTGCCCAGTCACATCCTGGCCCTT-TGAGAGATGTATCGGATGTGAGGGAGGACACAAAT 1019
Query 1002 GGTGAGGTCTATGTGCCGTCTGCTGCTTTAACATCTATTGATAGTTTGATCAAATTTGAC 1061
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGCGAGGTCAATGTGCCGTCTGCTGCTTTAACATCTATTGATAGTTTGATCAAATTTGAC 1079
Query 1062 AAGCCCAACTGTAGACACAAGGGGGGTGAAGTCTATTCATCCTTGTCAAGTTTGGATGGT 1121
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 AAGCCCAACTGTAGACACAAGGGGGGTGAAGTCTATTCATCCTTGCCAAGTTTGGATGGT 1139
Query 1122 GACAGCCCTGACTTGGACATCAGAATTCGTGAACACCTATGTGATAATCATTGCAACCAT 1181
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1140 GACAGCCCTGACTTGGACATCAGAATTCGTGAACACCTATGTGATAGTCATTGCAACCAT 1199
Query 1182 TGTTCCCGACCGCTTCCAACTGTGTATTTCCAATCGCAAAAGAAGGGTGATACACTCTTA 1241
||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct 1200 TGTTCTCGACCGCTTCCAACTGTGTACTTCCAATCGCAAAAGAAGGGGGATATACTCTTA 1259
Query 1242 TGCTGTGATTGTTTTCAGCATGGAAGATTTGTTGTTGGACATTCTTGTCTTGACTTTGTA 1301
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TGCTGTGATTGTTTTCACCATGGAAGATTTGTTGTTGGACATTCTTGTCTTGACTTTGTA 1319
Query 1302 AGAGTGGATCCAACCAAATTTTATGGCGATCAAGATGGAGACAATTGGACTGATCAGGAA 1361
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGAGTGGATCCAATGAAATTTTATGGCGATCAAGATGGAGACAATTGGACTGATCAGGAA 1379
Query 1362 ACTCTCTTGCTTCTTGAAGCTGTGGAACTCTATAATGAAAATTGGGTTCAAATTGCTGAT 1421
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1380 ACTCTCTTGCTTCTTGAAGCTGTGGAACTCTACAATGAAAATTGGGTTCAAATTGCTGAT 1439
Query 1422 CATGTTGGTTCCAAGTCAAAAGCTCAATGCAGTCTTCATTTTCTTCGATTACCTGTGGAG 1481
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1440 CATGTTGGTTCCAAGTCAAAAGCTCAATGCATTCTTCATTTTCTTCGATTACCTGTGGAG 1499
Query 1482 GATGGTCTTTTAGATAATGTTGAGGTTCCTGGTGTAACGAATACGGAAAACCCTACAAAT 1541
|||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1500 GATGGTCTATTAGATAATGTTGAGGTTTCTGGTGTAACTAATACGGAAAACCCTACAAAT 1559
Query 1542 GGATATGACCACAAAGGAACAGATTCAAATGGGGATTTACCTGGATATTCCGAGCAAGGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGATATGACCACAAAGGAACAGATTCAAATGGGGATTTACCTGGATATTCCGAGCAAGGT 1619
Query 1602 TCTGACACTGAGATCAAGCTTCCATTTGTGAAGTCTCCGAATCCGGTTATGGCATTGGTT 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TCTGACACTGAGATCAAGCTTCCATTTGTGAAGTCTCCGAATCCGGTTATGGCATTGGTT 1679
Query 1662 GCATTTTTGGCATCAGCTGTTGGACCTCGAGTTGCTGCGTCCTGTGCCCATGAGTCCCT- 1720
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1680 GCATTTTTGGCATCAGCTGTTGGACCTCGAGTTGCTGCGTCCTGTGCCCATGAATCCCTC 1739
Query 1721 TGCGGTTTTATCTGAGGACGATAGGATGAAATCCGAGGGAGTGCAAGGGAAAGAAGCCAG 1780
| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1740 T-CGGTTTTATCTGAGGACGATAGGATGAAATCTGAGGGAATGCAAGGGAAAGAAGCCAG 1798
Query 1781 CTTGCTTGAAGGAGAAAATCAACAGCAAGATGGAGCACACAAAACATCAAGCCAAAACGG 1840
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CTTGCTTGATGGAGAAAATCAACAGCAAGATGGAGCACACAAAACATCAAGCCAAAACGG 1858
Query 1841 AGCAGAACCGCCGACTCCACTGCCACAGGATAAGGTTATGGCAGCATTTAGAGCCGGTCT 1900
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 AGCAGAAGCGCAGACTCCACTGCCACAGGATAAGGTTATGGCAGCATTTAGAGCCGGTCT 1918
Query 1901 ATCAGCTGCAGCAACAAAAGCAAAATTGTTTGCTGATCATGAGGAACGCGAAATCCAAAG 1960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1919 ATCAGCTGCAGCAACAAAAGCAAAATTGTTTGCTGATCATGAGGAACGCGAAATCCAGAG 1978
Query 1961 ACTTTCTGCAAATATCGTTAATCACCAGCTGAAGAGGATGGAGCTGAAGCTAAAGCAGTT 2020
||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1979 ACTTTCTGCTAATATCGTTAATCACCAGCTGAAGAGGATGGAGCTGAAATTAAAGCAGTT 2038
Query 2021 TGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAAGTAGAGAAAACTCGTCAGAG 2080
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2039 CGCAGAAATTGAAACACTGTTGATGAAAGAATGCGAACAAGTAGAGAAAACCCGTCAGAG 2098
Query 2081 ATTTTCTGCAGAACGGGCTCGTATGCTCTCCGCAAGATTTGGATCACCTGGAGGAATCTC 2140
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2099 ATTTTCTGCAGAACGGGCTCGTATGCTCTCAGCAAGATTTGGATCTCCTGGAGGAATCTC 2158
Query 2141 TCCACAGATTAATAATAATAATCTCCAAGGCATGTCTCTATCCACAGGTGGTAATAACAT 2200
|||||||| ||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2159 TCCACAGACTAATAAT------CTCCAAGGCATGTCTCTATCCACAGGTGGTAACAACAT 2212
Query 2201 CAATTCTCTCATgcatcagcaacagcagcagcagcaacaacaagcttcagcaacttctca 2260
|||||||||||||||||||||||| ||||| | |||||| ||||| |||||||||||
Sbjct 2213 CAATTCTCTCATGCATCAGCAACATCAGCA--A-CAACAA---GCTTCCGCAACTTCTCA 2266
Query 2261 accaagcaTAATTCCGGGATTTAGCAACAACCCGCAAGTTCATGCACAGATGCAGTTCAT 2320
|||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 2267 ACCAAGCATAATCCCAGGATTCAGCAACAACCCGCAAGTTCAAGCACAGATGCATTTCAT 2326
Query 2321 GGCACG-C--caacaacaacaacaacaacaacaa-----------GC----TTTCTCTTT 2362
|||||| | |||||||||||||||||||||||| || |||||| ||
Sbjct 2327 GGCACGACAACAACAACAACAACAACAACAACAACAACAACAACAGCAAGCTTTCTCGTT 2386
Query 2363 TGGCCCGAGATTACCTCTTAATGCGATACAGACCAATGCAGGATCAACAGCATCACCAAA 2422
|||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2387 TGGCCCGAGATTACCTCTCAATGCAATACAGACCAATGCAGGATCAACAGCTTCACCAAA 2446
Query 2423 CGTCATGTTTGGCAACAACCAACTTAATAACCCTGCAGCAG--G-AGCAGCATCGATCAA 2479
|||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 2447 CGTCATGTTTGGCAACAACCAACTAAATAACCCTGCAGCAGCTGGAGCAGCATCGATCAA 2506
Query 2480 CCAGCCTTCGTTTAGTCACCCGATGGTTAGGTCTTCCACGGGTTCAGGCTCAGGGTCCGG 2539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2507 CCAGCCTTCGTTTAGTCACCCGATGGTTAGGTCTTCCACAGGTTCAGGCTCAGGGTCCGG 2566
Query 2540 CTTAGGCTTAAACTGAGATCCATCT--CTCTAGCTTATTTAGCTTATCAGTATCCATATT 2597
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2567 CTTAGGCTTAAACTAAGATCCATCTTTCTCTAGCTTATTTAGCTTATCAGTATCCATATT 2626
Query 2598 TATTTTGCCTTGTTATTTTTAAAGATAAGTTATT-GGCTTTGAGACCGTAGTGTTGTTCT 2656
||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 2627 TATTTCACCTTGTTATTTTTAAAGATAAGTTATTTGGCTTTGAGACCGTAGTCTTGTTCC 2686
Query 2657 AAGTTAGTGTCTTGTAGTATCAAATCATCTCTGAACCATCATCATTGTGAATT 2709
|||||||||||||||||||||||| |||| | | ||||||||||||||||
Sbjct 2687 AAGTTAGTGTCTTGTAGTATCAAACCATCA-T---C-ATCATCATTGTGAATT 2734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 134547741126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5