BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472412
Length=3241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21730.1 | Symbols: | P-loop containing nucleoside triphosp... 5136 0.0
> AT1G21730.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7630107-7636594
FORWARD LENGTH=3278
Length=3278
Score = 5136 bits (2781), Expect = 0.0
Identities = 3134/3293 (95%), Gaps = 70/3293 (2%)
Strand=Plus/Plus
Query 1 AAATTCATATATAGAATTGTTTTGTAACCAATTAGGTAGCAGTACTTTAATATCTGAGGC 60
|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 4 AAATTCATTTACAGAATTGTTTTGTAACCAATTAGATAGCAGTACTTTAATATCTGAGGC 63
Query 61 TATTTTCG------TC-----A-------tttttttGGAGGGAGTGGGAACaaaaaaaTC 102
|||||||| || | ||||||||||||||||||||| |||||||||
Sbjct 64 TATTTTCGTCATTTTCAAATTATGGTGTGTTTTTTTGGAGGGAGTGGGAAAAAAAAAATC 123
Query 103 GATACATGAATGACGTGACCTCCATTGATTTCGGCGAACGAG---------CTT--CT-T 150
|||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 124 GATACATGAATGACGTGACCTCCATTGATTTCGGCGAACGAGCTTCTTCTTCTTCCCTCT 183
Query 151 C-C-CTCTC--T--C-CC-TCTC--ACAGTAACTGTCTCTTGGAACCA-TTCCTCTTTCA 199
| | ||||| | | || |||| ||||||||||||||||||||||| |||||| ||||
Sbjct 184 CTCTCTCTCTTTGGCTCCATCTCTTACAGTAACTGTCTCTTGGAACCATTTCCTC-TTCA 242
Query 200 CTAGTACCTTC-AACAATGTCTGCTACTAGGTCACAGAGATCATCCACGATCTCGCCGGC 258
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 CTAGTATCTTCTAACAATGTCTGCTACTAGGTCACAGAGATCATCCACGATCTCGCCGGC 302
Query 259 TCGTCCTCGTAGATCGCCGGCGACTATTCCGATGAAACGGCCGGAAACTCCTTCTTCCTC 318
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 303 TCGTCCTCGTAGATCGCCGGCGACTATTCCGATGAAACGTCCGGAAACTCCTTCTTCCTC 362
Query 319 TCACTTTTCTGCCTCTCCGGCTACTTCTTCTAGTCCATTATTACGTTCTAGTCCTAGTCC 378
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 363 TCACTTTTCTGCTTCTCCGGTTACTTCTTCTAGTCCATTACTACGTTCTAGTCCTAGTCC 422
Query 379 GTCTACTTCCTCCGCCGCCGCCTCTGGTACGGTTGTTGCTTCCACGAAACTGAAGGAGAA 438
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 423 GTCTACTTCCTCCGCCGCCGCCTCTAGTACGGCTGTTGCTTCCACGAAACTGAAGGAGAA 482
Query 439 TATTACAGTCACGATTCGGTTTCGTCCTCTCAGTCCACGAGAGGTCAATAATGGAGATGA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TATTACAGTCACGATTCGGTTTCGTCCTCTCAGTCCACGAGAGGTCAATAATGGAGATGA 542
Query 499 GATTGCCTGGTATGCAGATGGAGACTATACTATTAGGAATGAGTACAATCCAGCTCTTTG 558
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 543 GATTGCGTGGTATGCAGATGGAGACTATACTATTAGGAATGAGTATAATCCATCTCTTTG 602
Query 559 TTATGGATTTGATAGGGTATTTGGTCCACCAACCACTACTCGGCGTGTTTATGATATTGC 618
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 603 TTATGGATTTGATAGAGTATTTGGTCCACCAACAACTACTCGGCGTGTTTATGACATTGC 662
Query 619 TGCTCAACAAGTTGTTAGTGGGGCAATGTCAGGGATTAATGGTACTGTGTTTGCTTATGG 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TGCTCAACAAGTTGTTAGTGGGGCAATGTCAGGGATTAATGGTACTGTGTTTGCTTATGG 722
Query 679 AGTTACTAGCAGCGGGAAGACTCACACAATGCATGGGGAGCAAAGGTCACCTGGAATAAT 738
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 723 AGTTACTAGCAGTGGGAAGACTCATACAATGCATGGGGAGCAAAGGTCACCTGGAATAAT 782
Query 739 TCCGTTGGCGGTAAAGGATGTATTTAGCATTATTCAGGAGACACCAGAACGGGAATTTCT 798
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCCGTTGGCTGTAAAGGATGTATTTAGCATTATTCAGGAGACACCAGAACGGGAATTTCT 842
Query 799 TCTTCGTGTTTCGTATCTAGAGATATACAATGAGGTCATCAATGACTTACTAGATCCAAC 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCTTCGTGTTTCGTATCTAGAGATATACAATGAGGTCATCAATGACTTACTAGATCCAAC 902
Query 859 AGGGCAGAATCTAAGAATACGAGAGGATGCTCAGGGCACATATGTTGAAGGTATAAAAGA 918
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 903 AGGGCAAAATCTAAGAATACGAGAGGATTCTCAGGGCACATATGTTGAAGGTATAAAAGA 962
Query 919 TGAGGTTGTCTTATCCCCTGCCCATGCTCTATCCCTAATAGCATCTGGAGAAGAACACAG 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGAGGTTGTCTTATCCCCTGCCCATGCTCTATCCCTAATAGCATCTGGAGAAGAACACAG 1022
Query 979 GCATGTTGGTTCAAATAATGTCAATCTTTTTAGCAGTCGGAGCCACACAATGTTCACCTT 1038
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1023 GCATGTTGGTTCAAATAATGTCAATCTTTTCAGCAGTCGGAGCCACACAATGTTCACCTT 1082
Query 1039 GACTATAGAAAGCAGTCCACATGGAAAAGGAGATGACGGCGAAGATGTTAGTCTCTCACA 1098
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1083 GACTATAGAAAGCAGTCCACATGGAAAGGGAGATGACGGCGAAGATGTTAGTCTCTCACA 1142
Query 1099 ATTGCACCTTATTGATCTTGCTGGATCTGAAAGTTCTAAAACTGAAATAACTGGACAGCG 1158
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1143 ATTGCACCTTATTGATCTTGCTGGGTCTGAAAGTTCTAAAACTGAAATAACTGGACAGCG 1202
Query 1159 GAGGAAAGAGGGCTCTTCCATCAATAAAAGTTTACTCACT-TTAGGCACTGTTATATCTA 1217
||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||
Sbjct 1203 AAGGAAAGAGGGCTCTTCTATCAATAAAAGTTTACTCACTCTT-GGCACTGTTATATCTA 1261
Query 1218 AATTGACAGACACCAAGGCAGCTCATATACCCTACAGGGATTCTAAACTTACGCGTCTCT 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AATTGACAGACACCAAGGCAGCTCATATACCCTACAGGGATTCTAAACTTACGCGTCTCT 1321
Query 1278 TGCAGTCAACACTTAGTGGTCATGGACGAGTATCACTTATTTGCACTATCACACCTGCAT 1337
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1322 TGCAGTCAACACTAAGTGGTCATGGACGAGTGTCACTTATTTGCACTATCACACCTGCAT 1381
Query 1338 CCAGCACAAGTGAAGAAACGCACAACACACTAAAATTCGCTCAGAGGTGCAAGCATGTTG 1397
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1382 CCAGCACAAGTGAAGAGACGCACAACACACTGAAATTCGCTCAGAGGTGCAAGCATGTTG 1441
Query 1398 AAATCAAAGCTTCACGAAATAAGATTATGGATGAAAAGTCCCTTATAAAAAAGTATCAGA 1457
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1442 AAATCAAAGCTTCACGAAATAAGATTATGGATGAGAAGTCCCTTATAAAAAAGTATCAGA 1501
Query 1458 AAGAAATATCGTGTTTACAAGAGGAACTTACGCAGTTGAGGCGCGGAAACCAAGAAGATT 1517
|||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||
Sbjct 1502 AAGAAATATCGTGTTTACAAGAAGAACTTACGCAATTGAGGCACGGAAACCAAGATGATT 1561
Query 1518 TGGCTGATCGAAAACTTCAGGTTAAACTTCAGTCAAGGTTGGAGGAGGATGAAGAAGCCA 1577
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1562 TGGCTGATCGAAAACTTCAGGTTAAACTTCAGTCAAGGTTGGAGGATGATGAAGAAGCCA 1621
Query 1578 AAGCAGCTCTGATGGGAAGAATTCAGCGATTGACAAAATTAATCTTGGTTTCAACAAAAA 1637
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1622 AAGCAGCTCTGATGGGAAGAATTCAGCGATTGACAAAGTTAATCTTGGTTTCAACAAAAA 1681
Query 1638 GTTCACTCCAAGCTGCTTCTGTAAAACCTGACCATATATGGAGGCAAGCTTTTGGAGAGG 1697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1682 GTTCACTCCAAGCTGCTTCTGTAAAACCTGACCATATATGGAGGCAAGCTTTTGGAGAGG 1741
Query 1698 ATGAGCTAGCATACTTGCCCGATAGAAGACGGGAGAACATGACTGATGATGGTGCTGTAA 1757
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1742 ATGAGCTAGCATACTTGCCCGATAGAAGACGGGAGAACATGGCTGATGATGGTGCTGTAA 1801
Query 1758 GCACAGTTTCTGAACATTTGAAGGAGCCAAGAGATGGCAATAGTAGTCTGGACGAGATGA 1817
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1802 GCACAGTTTCTGAACATTTAAAGGAGCCAAGAGATGGCAATAGTAGTCTGGACGAGATGA 1861
Query 1818 CAAAGGACAGGA-AGAGGAACAAGACTCGTGGAATGCTTGGCTGGCTAAAACTGAAAAAA 1876
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1862 CAAAGGACAGGAGAAAG-AACAAGACTCGTGGAATGCTTGGCTGGCTAAAACTGAAAAAA 1920
Query 1877 TCTGATGGTGTGGCCGGGACATTGCCGACTGATGGTAACCAGAGCCAAGCAAGTGGATCT 1936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 TCTGATGGTGTGGCCGGGACATTGCCGACTGATGGTAACCAGAGCCAAGCAAGTGGATCT 1980
Query 1937 CCTTCATCTTCTTCTAAGTGTACACAAACAAAAACAACCAGAAGAGAAAATGCAGCAGCT 1996
||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 1981 CCTTCATCTTCCTCCAAGTATACACAAACAAAAACAACTAGAAGAGAAAATGCAGCGGCT 2040
Query 1997 ATCAAGTCTTTTCCAGAAAAAACTGTTGCTGGAGACTTGTTCAGTGCTACTGTTGGACCA 2056
|| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 ATTAAGTCTATTCCGGAAAAAACTGTTGCTGGAGACTTGTTCAGTGCTACTGTTGGACCA 2100
Query 2057 GGAGACCCTTATCCGATTGGAACTACTATTGCGGATCAAATGGATCTTCTTCATGAGCAG 2116
| |||| | | ||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2101 GAAGACTCGTCTCCGACTGGAACTACTATTGCGGATCAAATGGATCTTCTTCACGAGCAG 2160
Query 2117 ACAAAAATACTTGTTGGAGAAGTAGCGTTGCGTACCAGTTCATTAAATCGGCTTTCCGAA 2176
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2161 ACAAAAATACTTGTTGGAGAAGTAGCCTTACGTACCAGTTCATTAAATCGGCTTTCCGAA 2220
Query 2177 CAAGCTGCTCGCAACCCTGAGGATTTTCACATCAGAGATCAAATACAGAAATTAGAAGAT 2236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CAAGCTGCTCGCAACCCTGAGGATTTTCACATCAGAGATCAAATACAGAAATTAGAAGAT 2280
Query 2237 GAAATCAGTGAAATTAAGGATCAAATACGTGTTCTCGAGCAACGAATTATTGAGATTTTC 2296
|||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2281 GAAATCAGCGAAAAGAAGGATCAAATACGTGTTCTCGAGCAACAAATTATTGAGATTTTC 2340
Query 2297 GGAATGACTCCCTATGCCGCAGATTCTCTTGGAATGTCCCAGGTTCTGTCAAAGCTCACA 2356
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2341 GGAATGACTCCCTATGCCTCAGATTCTCTTGGAATGCCCCAGGTTCTGTCAAAGCTCACG 2400
Query 2357 ATGCAACTAAATGAGAAAATCTTTGAACATGAGATAAAGTCTGCAGACAATAGGATACTT 2416
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2401 ATGCAACTAAATGAGAAAATATTTGAACATGAGATAAAGTCTGCAGACAATAGGATACTT 2460
Query 2417 CAGGAGCAGTTGCAGATGACTAAATCAGAAAACGCTGAGATGCAAGAGACAATCATTCTA 2476
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2461 CAGGAGCAGCTGCAGATGACTAAATCAGAAAACGCTGAGATGCAAGAGACAATCATTCTA 2520
Query 2477 CTAAGACAACAACTAGATTCGTTAGCCGAGAGACAATCAACACAGCAAATCGCAGGAGAT 2536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2521 CTAAGACAACAACTAGATTCGTTAGCCGAGAGACAATCAACACAGCAAATCGCAGGAGAC 2580
Query 2537 GAATCATCAGGGAAGAATACTCACAACAGAAATTGTGAGGAGTCAGAAATATACTCTGGA 2596
||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||
Sbjct 2581 GAATCATCAGGGAAGAATATTCACAACAGAAATGGTGAAGAGTCAGAAATATACTCTGGA 2640
Query 2597 GCAGGAACACCGACTAGCGTGATGAGTTTAAATAGAGTATTTGCTCAGGAAGAGACTAAA 2656
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2641 GCAGGAACACCGACCAGCGTGATGAGTTTAAATAGAGTATTTGCTCAGGAAGAGACTAAA 2700
Query 2657 GAGATCAACAACGAAACAGCTCTCAACTCTCAGGCATTGGAAATAGAGAATCTGAAGAAG 2716
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2701 GAGATCTACAACGAAACAGCTCTCAACTCTCAGGCATTGGAAATAGAGAATCTGAAGAAG 2760
Query 2717 GAGAAGATGAGATTGATTGAGGAAAAAGATGAGCTTGGAAAACTTAACAAGAAACTCACT 2776
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2761 GAGAAGATGCGATTAATTGAGGAAAAAGATGAGCTTGGAAAACTTAACAAGAAACTCACT 2820
Query 2777 GAAGAAGCTTCTTATGCTAAAGAATTGGCGTCTGCCGCAGCAGTAGAACTCCAGAATTTG 2836
||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2821 GAAGAAGCTTCATATGCTAAAGAATTGGCGTCTGCTGCAGCAGTAGAACTTCAGAATTTG 2880
Query 2837 GCTGAAGAAGTTACCAGACTCTGCAATGAAAACGCGAAACTCAGCAGGTGAAAAAGTTCC 2896
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2881 GCTGAAGAAGTTACCAGACTCTGCAATGAAAACGCGAAACTCAGCAGGTGAAAAAGTTTC 2940
Query 2897 AGGTCTCTCTGTTGTTGCTCGGAGACTCC-AGATTCAAGATAAATGCTGCAAAGTAAATC 2955
||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 2941 AGGTCTCTCTGTTGTTGCTCGGAGACTCCCAGCTTCAAGATAA-TGCTGCAAAGTAAATC 2999
Query 2956 ATCAT-GATTGACCTATAATGCAAATCTCAGACT--ACTTGGAAGGTGTTGATGTTGATC 3012
||| | | ||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 3000 ATCTTCG-TTGACATATAATGCAAATCTCAGACTCTACTTGGAAGGTAATGATGTTGATC 3058
Query 3013 CATCAAAGGGATCAAGAGATCATGATGCTCCCAAAGGCA---A-TCCAGAAAAACTGGTT 3068
||||||||||| ||||||||||||||||||||||||||| | |||||||||| |||||
Sbjct 3059 CATCAAAGGGAACAAGAGATCATGATGCTCCCAAAGGCATTCAATCCAGAAAAAATGGTT 3118
Query 3069 TGTATTGCTTCGATAGTATTTTGATTCTAACGTCTGATGACAAACACATGATGTAAATAA 3128
|||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 3119 TGTATTGCTTGGATAGTATTTTGATT--A-CGTCTGATGACAAACACATGATGTAAATA- 3174
Query 3129 TTGAATATTCTCACAAATTTGTTTTCTTGTTCGCAGTGACCACTATTTTTGTATGTTCGT 3188
|| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 3175 TTC------CTCACAAATTTGTTTTCTTGTTCTCAGTGACCACTATTTTTGTATGTTC-T 3227
Query 3189 CTTAGGTTGAATCGATGATGTTGCAACAAGTTCCATAGTTAGTTTTTCAGCTT 3241
| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3228 -T-AGGTTGAATCAATGATGTTGCAACAAGTTCCATAGTTAGTTTTTCAGCTT 3278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 161236554802
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5