BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472418
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1622 0.0
> AT1G21790.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:7654184-7655883 FORWARD
LENGTH=1232
Length=1232
Score = 1622 bits (878), Expect = 0.0
Identities = 1053/1135 (93%), Gaps = 22/1135 (2%)
Strand=Plus/Plus
Query 1 ATCGACCGACACGTGTCCGTTGCGTCCCAAAGAGGCTCTTTTAAGCGTAAAAACGTGAAG 60
|||||||||||||||||||||||||||| || | | | |||| | | |||||||||
Sbjct 1 ATCGACCGACACGTGTCCGTTGCGTCCC-AA-A-G-----TAAAGC-TTATAACGTGAAG 51
Query 61 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGGAGCTTGAGCTAAGAAC 120
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 52 GCATTTGTATCGTCTCTTCCGCCAAAATTGGAAATGGATATCGAAGTTTGAGCTAAG--- 108
Query 121 AATCCAATTTAGGGTTATCTTTGCCGGATTCTCAAGCAATCTCCGAGAGAAAGAGGAGGG 180
||||||||||||||||| |||||||||||||||||||||||||||||||| | | | | |
Sbjct 109 AATCCAATTTAGGGTTAACTTTGCCGGATTCTCAAGCAATCTCCGAGAGAGACA-GTGAG 167
Query 181 GTTTCGATGGCGAGGAACGGGATTGGGAACACGGGAGTGAAGAAGAATGGGGCTGGTG-A 239
|||||||||||||||||||||||||||| | |||| |||||||||||||||||| | |
Sbjct 168 GTTTCGATGGCGAGGAACGGGATTGGGAGTTCAGGAGGGAAGAAGAATGGGGCTGG-GCA 226
Query 240 GTTTTTCCTGGCGACGCTGCTTCTATGGCTGGGCTCCGTCGTGTTTGAGATTGCTTTCAA 299
||||||| | |||||||||||||| ||||| | |||||||||||||||||||||||||||
Sbjct 227 GTTTTTCTTAGCGACGCTGCTTCTTTGGCTTGTCTCCGTCGTGTTTGAGATTGCTTTCAA 286
Query 300 TCTCCGGACGGAGCTTCTATGGGTGATTTGCGGTGGATGTTTCTTTCAATTGATGAATTG 359
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 287 TCTCCGGACGGAGCTTCTCTGGGTGATTTGCGGTGGATGCTTCTTTCAATTGATGAATTG 346
Query 360 GGTGGTTCGTTCTTGGATTTCTCGTGACCCTCTCTTTGTTAATACCTCTGTCTCGCTATT 419
||| |||||||| |||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 347 GGTTGTTCGTTCATGGATTTCTCGTGACCCTATATTTGTTAATACCTCTGTCTCGCTTTT 406
Query 420 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATTCTGCTCAATCAATGCTTAGCCAA 479
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 407 GCACTCAATCATCACCTCCGCATCAGTGGTTTTCATACTTCTCAATCAATGCTTAGCCAA 466
Query 480 AGGTTTAGACGAGATGTTCGATCATTCTGAGTTGGTTGGTGGTACTTGGAAATGGGCATA 539
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 467 AGGTTTAGACGAGATGTTTGATCATTCTGAGTTGGTTGGTGGGACTTGGAAATGGGCATA 526
Query 540 TCCAGCTTTGTGTTTCTCATGCGGATACTTTGCATATGACCAGTGGGATATGCTTCAGTA 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 527 TCCAGCTTTGTGTTTCTCATGCGGCTACTTTGCATATGACCAGTGGGATATGCTTCAGTA 586
Query 600 CCGATTATACAGCGGGTTAATACCTTCCATTCTGGTTCACCATCTAGTCCTCCTTGTTTG 659
||| ||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 587 CCGGTTATACAGCGGCTTAATACCTTCTATTCTTGTTCACCATCTAGTCCTCCTTGTTTG 646
Query 660 CTTCACATTGGCTCTATACCGAAATGTAACCATCAACTACCTGATTCTTACTCTCATTTG 719
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 647 CTTCACATTGGCACTATACCGAAATGTAACCATCAACTACCTTATTCTTACTCTCATCTG 706
Query 720 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCGGGAATCCGAGA 779
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 707 TGAGATGCATTCGATCTTTCTACACGTGAGGAAGCTAAGGAGAATGGCAGGAATCCGAGA 766
Query 780 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTGCTAAACTGGACAGCCTTTGTGTTTGC 839
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 767 CAGCAACACAGCATTGGTGAAACTGGAGTGGGTATTAAACTGGACAGCCTTTGTGTTTGC 826
Query 840 GAGGTGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 899
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 GAGATGCATTCCTCACATTCTCATCACTATCAAGCTGATCAAAGACGCACACAAGTTTGG 886
Query 900 GAAAGGTGTGGAGTTACCGCTCGCTTTGTCTGGTATGGCGGGAATGAACATCCTCAATGT 959
|||||| ||||||||||| |||||| ||||||||||||| ||||||||||| || |||||
Sbjct 887 GAAAGGCGTGGAGTTACCACTCGCTCTGTCTGGTATGGCAGGAATGAACATTCTTAATGT 946
Query 960 CGGCCTCGGATTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCAACAGAAGAAATCA 1019
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 947 TGGCCTCGGGTTGGATCTGTTTCATGCTTTCAGAAGAGAGAGAAGCCACAGAAGAAACCA 1006
Query 1020 AGAGAACAACAACCATCACGACCATGGAGAATAATAGCTAATTTAGAAACCATCCCATTA 1079
||||||| ||||| |||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 1007 AGAGAACGGCAACCTTCACGACCATGGAGAATAATAGCTAATTTAGAGGCAATCC-ATTA 1065
Query 1080 CCGA-TGGCTATGGTTTGTTGT---ATGACTACTACCCACTCATCTCTTGTTTAT 1130
|||| | |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1066 CCGAAT--CTATGGTTTGTTGTTGTATGAATACTACCCACTCATCTCTTGTTTAT 1118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5