BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472419
Length=2015
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21810.1 | Symbols: | Plant protein of unknown function (DU... 2597 0.0
AT1G77580.2 | Symbols: | Plant protein of unknown function (DU... 84.2 4e-15
> AT1G21810.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr1:7656399-7658634 REVERSE LENGTH=2066
Length=2066
Score = 2597 bits (1406), Expect = 0.0
Identities = 1747/1911 (91%), Gaps = 25/1911 (1%)
Strand=Plus/Plus
Query 4 ATGACTGGTACTACTTTGATATTGGAACCAGCTATGGATTCCAAAGATGAGCTAGTGAAA 63
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGACTGGTACTACTTTGATATTGGAACCAGTTATGGATTCCAAAGATGAGCTAGTGAAA 60
Query 64 CAACATGCCAAAGTTGCAGAAGATGCTGTTGCTGGGTGGGAGAAAGCTGAGAATGAAGTG 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAACATGCCAAAGTTGCAGAAGATGCTGTTGCTGGGTGGGAGAAAGCTGAGAATGAAGTG 120
Query 124 GTTGAGCTGAAGCAAAAGCTCGAGGATGCGG-TGGATAAGAACATTGTCTTGGAAGATAG 182
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 121 GTTGAGCTGAAGCAAAAGCTCGAGGATGCGGCTG-ATAAGAACATTGTCTTGGAAGATAG 179
Query 183 GGTAAGTCATCTTGATGGGGCACTCAAGGAGTGTGTTAGACAACTAAGGCAGTTTAGAGA 242
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 180 GGTAAGTCATCTTGATGGGGCGCTTAAGGAGTGTGTGAGACAACTAAGGCAGTTTAGAGA 239
Query 243 TGAACAAGAGAGGAAAATTCAAGAAGCCGTGACTGAGAGTACCAAGGAGTTGCAATCTGC 302
||||||||||| ||| ||||||| ||| ||||||||||| |||||||||||||| |||||
Sbjct 240 TGAACAAGAGAAGAATATTCAAGCAGCTGTGACTGAGAGCACCAAGGAGTTGCATTCTGC 299
Query 303 TAACACTGGTCTAGAGAGGCGAGTTCTTGAGCTCCAGAAGGAAGCAGAAGCTGATAAATC 362
||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 300 TAACACTGGTCTAGAGAAGCGAGTTCTTGAGCTCCAGAAAGAAGCAGAAGCTGCTAAATC 359
Query 363 CGAAATCATGATGATGAGACGCGAGTTTCTTAGACAGCGTGGAGAGCTTGAGATTGTTAT 422
|||| ||||||| |||||||||||||||||| |||||||| ||| ||||||||||| ||
Sbjct 360 TGAAAACATGATGCTGAGACGCGAGTTTCTTACACAGCGTGAAGACCTTGAGATTGTGAT 419
Query 423 GATTGAGAGGGATTTGAGCACTCAAGCAGCTGAAACTGCTAGTAAACAGCATTTAGATAG 482
|||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 420 GATTGAGAGGGACTTGAGCACTCAAGCAGCAGAAACTGCTAGTAAGCAGCATTTAGACAT 479
Query 483 CATAAAGAAGGTGGCGAAACTCGAAGCTGAGTGCAGGAAGCTTAGGATTTTGGCTAAATC 542
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CATAAAGAAGTTGGCGAAACTCGAAGCTGAGTGCAGGAAGCTTAGGATTTTGGCTAAAAC 539
Query 543 ATCATCATC--TA--ATC-AATC---CT-TAGATAGTCATTCAGATGGAGGAAGGGAGAG 593
||||||||| || ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 540 ATCATCATCGCTATCATCTAATCAATCTGTGGATAGTCATTCAGATGGAGGAAGGGAGAG 599
Query 594 AGTTGAGGGAAGTTGCTCTGATTCATGGGCATCATCAGCATTTATTTCTGAGTTAGATCA 653
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGTTGAGGGGAGTTGCTCTGATTCATGGGCATCATCAGCATTTATTTCTGAGTTAGATCA 659
Query 654 ATTCAAGAATGAAAAAGGCGGCGATAGAAGTCTTCAGGGAACTACTTCATCAACTGAAAT 713
| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 660 AATCAAGAATGAAAAAGGCGGCAATAGAAGTCTTCAGGGCACTACTTCATCAACTGAAAT 719
Query 714 TGATCTCATGGATGATTTCCTTGAGATGGAACGTCTTGTGGCTCTGCCTGCTGAGACACA 773
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 720 TGATCTCATGGATGATTTCCTTGAGATGGAACGTCTTGTGGCTCTTCCTACTGAGACACA 779
Query 774 AGCTAAAAACTCCAAG-ACTGAATATGAAATGAGCTTAATGGAGAAGTTGGAGAAGCTAC 832
||||||||||||||| | || ||||||| |||||||||||||||||||||||||| |||
Sbjct 780 GGCTAAAAACTCCAAGGA-TGGATATGAATTGAGCTTAATGGAGAAGTTGGAGAAGATAC 838
Query 833 AGGCAGAAAAGGATGAGCTTGAAA-ATGAAGTTAAAAGATGTAGAGAAGCAGAGAAGAGA 891
| |||||||||||||| ||||||| | ||||||||| | ||||||||||| || ||||||
Sbjct 839 AAGCAGAAAAGGATGATCTTGAAAGA-GAAGTTAAATGTTGTAGAGAAGCGGAAAAGAGA 897
Query 892 TTGAGCTTAGAGCTCGAAGCTGCTATTTGTGATAAAATGGAGTTTGAAGTTATATTAAAG 951
|||||||||||| | ||||| | | || |||| ||||||||||| |||| ||| ||||||
Sbjct 898 TTGAGCTTAGAGATTGAAGCAGTTGTTGGTGACAAAATGGAGTTGGAAGATATGTTAAAG 957
Query 952 AAGATGGAAGCTGAGAAAGCTGAACTACAGATATCGTTTGACGTAATCAAACATAGATAT 1011
| | ||||||||||||||||||| ||| ||| ||| |||||||| ||||| ||| ||||
Sbjct 958 AGGGTGGAAGCTGAGAAAGCTGAGCTAAAGACATCTTTTGACGTGCTCAAAGATAAATAT 1017
Query 1012 CAAGAATCTAGAGATTGTTTTCAAGAAATTGAGATGAAGATGAAAAAGCTACAAGCAGAA 1071
||||| || |||| ||||||||||||| |||| | ||| || | |||||||||||||||
Sbjct 1018 CAAGAGTCAAGAGTTTGTTTTCAAGAAGTTGACACAAAGTTGGAGAAGCTACAAGCAGAA 1077
Query 1072 AAAGATGA-CTTTGAAACTGAAGTTGAAT-GTTGTAGAGAATCGGAAAAGAGATTGAACT 1129
|| ||||| ||| || | ||||||| | | |||||| |||| | || |||||||| | ||
Sbjct 1078 AAGGATGAGCTT-GACAGTGAAGTT-ATTTGTTGTAAAGAAGCAGAGAAGAGATTCAGCT 1135
Query 1130 TAGAGCTTGAAGCTATTGTCGGTGACAAAACAGAGTTGGAAGA-GAAGTTGGAGAAGATG 1188
|||| || |||||| | || |||||||||| ||| ||||||| || |||||||||||||
Sbjct 1136 TAGAACTCGAAGCTGTAGTTGGTGACAAAATTGAGATGGAAGATGA-GTTGGAGAAGATG 1194
Query 1189 GAAGCTGAGAAAGCTGAGCTAAAGATATCTTTTGACTTAATTAAAGATCAATATCAAGAA 1248
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1195 GAAGCTGAGAAAGCTGAGCTAAAGATATCTTTTGACGTAATTAAAGATCAATATCAAGAA 1254
Query 1249 TCTAGAGTTTGTTTTCAAGAAGTTGAGATGAAGTTGGAAGAGATCAAAAGGGAGCTGAAA 1308
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 1255 TCTAGAGTTTGTTTTCAAGAAGTTGAGATGAAGTTGGAAGCGATGAAAAGGGAGCTTAAA 1314
Query 1309 CTAGCTAATGAATCAAAAACACAAGCTGAATCTCAGTTCATCAGAATGGAAGCAGAGGTG 1368
|||||||||||||| ||||||||||| ||||||| | | | |||||||||||||||||||
Sbjct 1315 CTAGCTAATGAATCGAAAACACAAGCCGAATCTCGGGTGACCAGAATGGAAGCAGAGGTG 1374
Query 1369 AGAAAGGAGAGG-TGTGTTTCTGATGAGCTGAGGGAAAAGTGTGAGGCTTTTgaagaaga 1427
|||||||||||| | ||| ||||||| ||| | ||||||||||||| | |||||||||||
Sbjct 1375 AGAAAGGAGAGGAT-TGTCTCTGATGGGCTAAAGGAAAAGTGTGAGACATTTGAAGAAGA 1433
Query 1428 gcttagaagagagatagaagagaagacaatgataaagagagaaaaaatagaaccaaagat 1487
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1434 GCTTAGAAGAGAGATAGAAGAGAAGACAATGATCAAGAGAGAAAAAGTGGAACCAAAGAT 1493
Query 1488 caaacagggagaCATAGCAACAGCTGAAGGAAAATTTGCAGATTGTCAGAAAACAATAGC 1547
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1494 CAAACAGGAAGACATAGCAACAGCTGCAGGAAAATTTGCAGATTGTCAGAAAACAATAGC 1553
Query 1548 ATCACTAGGGAAACAGCTGA-AATCCCTTGCAAAACTTGAAGATTTCTTGATCGATTCAG 1606
|||||| ||||||||||| | |||| ||||||| ||| ||||| |||||||||||| |||
Sbjct 1554 ATCACTTGGGAAACAGCT-ACAATCTCTTGCAACACTAGAAGAATTCTTGATCGATACAG 1612
Query 1607 CTAGCATTCCAGGTTCTGCAAGGTCAGTTAACAAGAAGGAAGtttttttAGGAAAAGAAC 1666
||||||||||||||||||||||||||||| |||| ||||||| ||| ||||||||||| |
Sbjct 1613 CTAGCATTCCAGGTTCTGCAAGGTCAGTTCACAACAAGGAAGCTTTGTTAGGAAAAGATC 1672
Query 1667 CTCATGAGTGCAACAAAACAACCAATGGAAGATCACTTGAGTTTCTTGCAATCAAGAACA 1726
|||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1673 CTCATGAGTGCATCAAAACAATCAATGGAAGATCACTTGAGTTTCTTGCAATCCAGAACA 1732
Query 1727 GCAACAACAATACCTCACCTCCTTGTTCATCTTCTTCTGATTCAACAACAGTGTCATTAA 1786
|||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1733 GCAATAACAAGACCTCACCTCCTTGTTCATCTTCTTCGGACTCAACAACAGTGTCATTAA 1792
Query 1787 TTATGACATCAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCCACGGTTTTCA 1846
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1793 TTATGTCATCAAACCGAGGGAGTTCTGAGAAGAATCGCAACGGATTTGCCACGGTTTTCA 1852
Query 1847 CTCGAAGTAGGAACGCAATACATTTGGGGATTTAGGAGAAGCTATACGTTC 1897
|||||||||| ||| || || ||||||||||||||||||||| ||| ||||
Sbjct 1853 CTCGAAGTAGAAACTCAGTAAATTTGGGGATTTAGGAGAAGCAATAGGTTC 1903
Score = 178 bits (96), Expect = 2e-43
Identities = 113/121 (93%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 1895 TTCTTACCATAAATTTCAGATTCTCACTTGTTAGTAGCAGAAAGATCACCCTTGTCTCTT 1954
|||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1947 TTCTTACCATAATTTTCAGATTCTGACTTGTTAGTAGCAAAAAGATCACCCTTGTTTCTT 2006
Query 1955 CTGCTACTTAATGTAATCTTCTTAACGTTATATGTCTTGTGAGATTCATCTTTGTTATTT 2014
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2007 TTGCTACATAGTGTAATCTTCTTAACGTT-TATGTCTTGTGAGATTCATCTTTGTTATTT 2065
Query 2015 C 2015
|
Sbjct 2066 C 2066
> AT1G77580.2 | Symbols: | Plant protein of unknown function (DUF869)
| chr1:29144027-29147584 REVERSE LENGTH=2768
Length=2768
Score = 84.2 bits (45), Expect = 4e-15
Identities = 55/60 (92%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1796 CAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCCACGGTTTTCACTCGAAGTA 1855
|||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 2519 CAAACCGAGGGAGTTCTGAGAAGAATCGCAATGGATTTGCAACAGTATTCACAAGAAGTA 2578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99848884005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5