BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472420
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21840.1 | Symbols: UREF | urease accessory protein F | chr1... 1203 0.0
> AT1G21840.1 | Symbols: UREF | urease accessory protein F | chr1:7666460-7667758
FORWARD LENGTH=1299
Length=1299
Score = 1203 bits (651), Expect = 0.0
Identities = 773/832 (93%), Gaps = 8/832 (1%)
Strand=Plus/Plus
Query 253 TTT-AAAAATCGCTTTTTTAGGTTGAAACATTGCTCTGATGGTTTCTCTATAGTAATGCA 311
||| ||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||
Sbjct 297 TTTCAAAAATCGCTTTTTTAGATCGAAACATTGCTCTGATTGTTTCTCTATATTAATGCA 356
Query 312 TCA-T-TGTGTGTTT-ACTTCT-TTATAGAAAGAGGTCTAATTGATGGAAGTAGACGAAA 367
||| | ||||||||| |||||| || ||||||||||||| ||||||||||| ||||||||
Sbjct 357 TCATTGTGTGTGTTTAACTTCTCTT-TAGAAAGAGGTCTCATTGATGGAAGAAGACGAAA 415
Query 368 GATGCGACATTGTTATGTCAAGAGCAGCTTCTTGTATGCAGTGGAGTCAATGGCAATTAC 427
|| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 416 GACGCGACATTGTTATGTCAAGAGCTTCTTCTTGTATGCAGTGGAGTCAGTGGCAATTAC 475
Query 428 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGCTCGGTCTCGAAGCAGCGGTTC 487
|||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 476 TTGATTCAATTTTACCAACAGGAGGATTTGCTCATTCGTTTGGTCTCGAAGCAGCTATTC 535
Query 488 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCATATCATTCATCTGTTGGATA 547
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 536 AGACTCGGTTAGTTTCGTCTCCTGAAGATTTAGAAACTCACATCATTCATGTGTTGGATA 595
Query 548 ACACAGCCAGCTTATTGCTTCCTTTTGTTTACTCTGCTCTCAAATCTCCTGATATTGAGA 607
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 596 ACACAGCTAGCTTATTGCTTCCTTTTGTCTACTCTGCTCTCAAATCTCCTGATATAGAGA 655
Query 608 CATGGCACAAACTTGATGGAATTCTTAACGCTACTTTAACTAACCAAGTTTCTTCCAAGG 667
||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 656 CATGGCATAAACTTGATGGAATACTTAACGCTACTTTAACTAACCAAGTTTCTTCAAAGG 715
Query 668 CATCGGTTTCACAAGGATCAGCGTTGTTTCGTATAGCTGCTTCAGTTTTCACTGAGATAC 727
| || | |||||||||||||| |||||||||||||||||||| ||||| |||||| |||
Sbjct 716 CGTCAATGTCACAAGGATCAGCTTTGTTTCGTATAGCTGCTTCGGTTTTTACTGAGGTAC 775
Query 728 CGAATCTTAAGATGATTCGTGACGCTTCTTTGGGCTCCAAAAATGTATATTTCCACCATG 787
| |||||||||||||||||||| ||||||||||| || |||||||||| |||||||||||
Sbjct 776 CAAATCTTAAGATGATTCGTGATGCTTCTTTGGGGTCAAAAAATGTATGTTTCCACCATG 835
Query 788 CACCGATATTCGGGCTTGTATGTGGTCTACTCGGTATGGATCCCGAGACTTCTCAGAGAG 847
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 836 CACCGATATTCGGGCTTGTATGTGGTTTACTCGGCATGGATTCCGAGACTTCTCAGAGAG 895
Query 848 CGTATCTGTTTGTAACGCTTAGAGATGTTCTCTCGGCTGCAACGAGATTGAACATAGTGG 907
||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
Sbjct 896 CGTATCTGTTTGTAACGCTCAGAGATGTTCTTTCTGCTGCAACGAGATTGAACATAGTTG 955
Query 908 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCTATTGT-AGCTGAAACAGTTTTA 966
||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||
Sbjct 956 GACCGATGGGTGCTTCGGTGATGCAGCATCGCATTGCCATTGTTA-CTGAAACCGTTTTA 1014
Query 967 GAGAAATGGATGGATCGTGAAGCTAGCGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1026
||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1015 GAGAAGTGGATGAATCGTGAAGCTGGTGAAGCATGTCAGACTTCTCCTTTGCTGGATGTT 1074
Query 1027 GTGCAAGGTTGCCACGGTTACTTGTTTTCCAGACTGTTTTGTTCTTGATGAA 1078
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1075 GTGCAAGGTTGTCACGGTTACTTGTTTTCTAGACTGTTTTGCTCTTGATGAA 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5