BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472424
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein ... 2285 0.0
AT1G77630.1 | Symbols: | Peptidoglycan-binding LysM domain-con... 785 0.0
> AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein
1 precursor | chr1:7680481-7682641 FORWARD LENGTH=1574
Length=1574
Score = 2285 bits (1237), Expect = 0.0
Identities = 1380/1449 (95%), Gaps = 9/1449 (1%)
Strand=Plus/Plus
Query 49 ACTCTCTGTCATTGTCCTCTAAGAGAGATTGAAAACCCTACGAGATTTTGAATTTCGTAA 108
|||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||
Sbjct 133 ACTCTCTGTCATTGTCCTGTAAGAGAAATTGAAAACCCTAGGAGATTTTGAATTTCGTAA 192
Query 109 AACCCTAAACTACTAAAATGAAAAACCCAGAAAAACCCAtcttcttcttcttcgtctctc 168
|||||||||| || |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 193 AACCCTAAAC-ACAAAAATGAAAATCCCAGAAAAACCCATCTTCTTAATCTTCGTCTCTT 251
Query 169 taattctagcttcga-ctctcgtcttcACAGCTACAGCGAAATCAACAATCGAGCCTTGC 227
| || |||||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 252 TGATCCTAGCTTCGAGCT-TAACCTTCACAGCGACAGCGAAATCAACAATCGAGCCTTGC 310
Query 228 TCAAGCAACGACACTTGCAACTCTTTACTCGGCTACACGCTCTACACCGACCTCAAAGTC 287
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 311 TCAAGCAACGACACTTGCAACGCTTTACTCGGCTACACACTCTACACCGACCTCAAAGTC 370
Query 288 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTC-AGTCCTTTTAGCTAACGCCAT 346
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 371 TCAGAAGTCGCATCTCTCTTCCAAGTAGACCCAATCTCTA-TCCTTTTAGCTAACGCCAT 429
Query 347 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCAAAGCTCTTCCTCAAAAT 406
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 430 CGATATCTCTTACCCAGACGTCGAAAACCATATCCTTCCTTCGAAGCTCTTCCTCAAAAT 489
Query 407 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGGAAATCTGTCTCTACCCATTACAAAAC 466
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 490 CCCAATCACTTGCTCCTGCGTCGACGGAATCAGAAAATCTGTCTCTACCCATTACAAAAC 549
Query 467 CCGACCTTCCGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGTTTGGTCTCTGC 526
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 550 CCGACCTTCTGACAATCTAGGATCGATTGCTGACTCTGTTTACGGAGGCTTGGTCTCTGC 609
Query 527 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGTTGCTTGATGTTGGGACGAG 586
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 610 TGAGCAGATCCAGGAAGCTAACTCGGTGAATGACCCGTCGCTGCTTGATGTTGGGACTAG 669
Query 587 TCTTGTTATCCCCTTGCCTTGCGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCGGT 646
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 670 TCTTGTTATCCCCTTGCCTTGTGCTTGTTTCAATGGCACCGACAATTCTTTGCCGGCTGT 729
Query 647 TTATTTGTCGTATGTGGTTAGGGAGATTGATACATTGGTCGGAATTGCGAGGAGGTATTC 706
||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||
Sbjct 730 TTATTTGTCGTATGTTGTGAAGGAGATTGATACATTGGTCGGAATCGCGAGGAGGTATTC 789
Query 707 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GACTACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGG 849
Query 767 AGATATTCTCGCTGTTCCTTTGTCAGCCTGTGCTTCAAAGTTCCCCAGATATGCATCGGA 826
||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 850 AGATATTCTCGCTGTTCCTTTGTCAGCTTGTGCTTCAAAGTTCCCCAGATACGCTTCGGA 909
Query 827 TTTCGGATTGATTGTTCCAAATGGTAGCTACGCTTTAGCTGCAGGTCATTGTGTGCAATG 886
|||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 910 TTTCGGATTGATTGTTCCAAATGGTAGCTATGCTCTAGCTGCAGGTCACTGTGTGCAATG 969
Query 887 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCTCTAGCCGTCTCTTG 946
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 970 CAGCTGTGCGCTTGGGAGCCGCAATTTGTATTGTGAGCCTGCTTCCCTAGCCGTCTCTTG 1029
Query 947 TTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CTCAAGTATGCAGTGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGTGCAGCAGAC 1089
Query 1007 TAGCGCTGGCTGTAATGTTACAACCTGTGATTACAATGGTATTGCCAACGGCACTATCTT 1066
|||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1090 TAGCGCTGGCTGTAATGTTACAACTTGTGATTACAACGGTATAGCCAACGGCACTATCTT 1149
Query 1067 GACCATGCTGACCAGGTCTCTTCAACCCCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1126
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1150 AACCATGCTGACCAGGTCTCTTCAACCTCGATGTCCCGGACCTCAACAATTTGCGCCGCT 1209
Query 1127 TCTAGCTCCACCGGATACTGTTCCTAAGGATGTAATGTATGCACCAGCACCTTCACCAGA 1186
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1210 TCTAGCTCCACCAGATACTGTTCCTAGGGATGTAATGTATGCACCAGCACCTTCACCAGA 1269
Query 1187 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTGTGCTTCCTTCAGGCGG 1246
||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1270 TTTTGATGGTCCAGGATCCATAGCATCTTCACCAAGATCATCTATGCTTCCTGGTGGTGG 1329
Query 1247 TGATTCCGTCCCAGGTAACCCCGCTAATGGTCCAGCCGGTAGCATCTCAATCGCCTCTGC 1306
| || | | |||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1330 T-AT-CT-TGCCAGGTAATCCCGCTAATGGTCCAGCCGGTAGCATCTCAACCGCCTCTGC 1386
Query 1307 CTCCTCAGTTAGCTACTTCATTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGT 1366
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1387 CTCCTCAGTTAGCTACTTCTTTATCACATTTCTCATCTCCATTGCTTCTTTTTCCCTTGC 1446
Query 1367 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTGGAAACTCCTATGTGA 1426
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1447 TTTGTCATCTTGATTCAACAACAATTGTTTATTTTCCGCGCATTAAAAACTCCTATGTGA 1506
Query 1427 AATTCTTGATGAGTAAAACCAAAACATTGGTTTTTGATCTCTTTGATAATATTTGAAGTT 1486
||||||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 1507 AATTCTTGATGAGTAGAACCAAAACATTG-TTATTGATCTCTTTGATAATTTTTGAAGTT 1565
Query 1487 GCATATCTC 1495
|||||||||
Sbjct 1566 GCATATCTC 1574
> AT1G77630.1 | Symbols: | Peptidoglycan-binding LysM domain-containing
protein | chr1:29173457-29175530 FORWARD LENGTH=1684
Length=1684
Score = 785 bits (425), Expect = 0.0
Identities = 875/1085 (81%), Gaps = 59/1085 (5%)
Strand=Plus/Plus
Query 124 AAATGAAAAACCCAGAAAAACCCAtcttcttcttcttcgtctctctaattctagcttcga 183
||||||| || ||||||||| || | | | |||| | || | ||||||| ||||||| |
Sbjct 268 AAATGAAGAATCCAGAAAAA-CC--C-T-TACTTC-T-GT-T-TCTAATTTTAGCTTCAA 318
Query 184 -ctctcgtcttc-ACAGCTACAGCGAAATCAACAATCGAGCCTTGCTCAAGCAACGACAC 241
|| | | | || | || || || ||||| ||||| ||||||||||| || || |||||
Sbjct 319 GCT-TAG-CATCAATGGCGACTGCAAAATCCACAATAGAGCCTTGCTCCAGTAAAGACAC 376
Query 242 TTGCAACTCTTTACTCGGCTACACGCTCTACACCGACCTCAAAGTCTCAGAAGTCGCATC 301
||| ||||| || || |||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 377 TTGTAACTCATTGCTAGGCTACACTCTCTACACCGACCTCAAAGTCACAGAAGTCGCTTC 436
Query 302 TCTCTTCCAAGTAGACCCAATCTCAGTCCTTTTAG-CTAACGCCATCGATATCTCTTACC 360
||||||||||||||||||| | ||| | ||||| | ||||| |||| |||||||||||||
Sbjct 437 TCTCTTCCAAGTAGACCCAGTTTCAATGCTTTT-GTCTAACTCCATTGATATCTCTTACC 495
Query 361 CAGACGTCGAAAACCATATCCTTCCTTCAAAGCTCTTCCTCAAAATCCCAATCACTTGCT 420
|||||||||| |||||| ||||||| | |||||||||||||| ||||||||||||||||
Sbjct 496 CAGACGTCGAGAACCATGTCCTTCCCGCTAAGCTCTTCCTCAAGATCCCAATCACTTGCT 555
Query 421 CCTGCGTCGACGGAATCAGGAAATCTGTCTCTACCCATTACAAAACCCG-ACCTTCCGAC 479
|||| |||||||||||||| ||||| |||| || |||||||| || || | |||| |||
Sbjct 556 CCTGTGTCGACGGAATCAGAAAATCCCTCTCGACTCATTACAAGACTCGTA-CTTCTGAC 614
Query 480 A-ATCTAGGATCGATTGCTGACTCTGTTTACGGAGGTTTGGTCTCTGCTGAGCAGATCCA 538
| | ||||||||||||||||||||||||||||| ||| |||||||| | |||||||| ||
Sbjct 615 ACA-CTAGGATCGATTGCTGACTCTGTTTACGGTGGTCTGGTCTCTCCGGAGCAGATTCA 673
Query 539 GGAAGCTAACTCGGTGAATGACCCGTCG-TTGCTTGATGTTGGGACGA-GTCTTGTTATC 596
|| || || || | || ||||| ||| || || ||||| || || | | ||||| ||
Sbjct 674 GGTCGCGAATTCAGAGACTGACCTTTCGGTT-CTCGATGTAGGTACAAAG-CTTGTGATT 731
Query 597 CCCTTGCCTTGCGCTTGTTTCAATGGCACCGAC-AAT-TCTTTGCCGGCGGTTTATTTGT 654
|| |||||||||||||| |||||||| ||||| ||| |||| |||||| ||||| | |
Sbjct 732 CCATTGCCTTGCGCTTGCTTCAATGGTACCGATGAATCTCTT--CCGGCGCTTTATCTAT 789
Query 655 CGTATGTGGTTAG-GGAGATTGATAC-ATTGG-TCGGAATTGCGAGGAGGTAT-TCGAC- 709
| || || || || ||| || || || || || | ||||| || | ||| | | |||||
Sbjct 790 CTTACGTTGTGAGAGGA-ATCGACACTAT-GGCT-GGAATCGCAAAGAGAT-TCTCGACC 845
Query 710 TACTATTACTGATTTGATGAATGTGAATGCTATGGGAGCTCCTGATGTTAGTTCTGGAGA 769
| || |||||||||| | || |||||||||||||||||||||||| | | | |||| ||
Sbjct 846 T-CTGTTACTGATTTAACAAACGTGAATGCTATGGGAGCTCCTGATATCAATCCTGGTGA 904
Query 770 TATTCTCGCTGTTCCTTTG-TCAGCCTGT-GCTTCAAAGTTCCCCAGATATGC-ATCGGA 826
||| |||||||| || ||| | ||| ||| | |||||| ||||||| ||| || | ||||
Sbjct 905 TATCCTCGCTGTCCCATTGCT-AGCTTGTAG-TTCAAATTTCCCCAAATACGCTA-CGGA 961
Query 827 TTTCGGATTGATTGTTCCAAATGGTAGCTACGCTTT-AGCTGCAGGTCATTGTGTGCAAT 885
|| |||||| || |||||||||| ||||| ||| | | ||||||| || ||||| ||||
Sbjct 962 TTACGGATTAATCATTCCAAATGGAAGCTATGCTCTCA-CTGCAGGCCACTGTGTACAAT 1020
Query 886 GCAGCTGTGCGCTTGGGAGCCGCAATT-TGTATTGTGAGCCTGCTTCTCTAGCCGTCTCT 944
||||||||| || || ||||| || | |||||||||||||||||||| || | ||||||
Sbjct 1021 GCAGCTGTGTTCTCGGAAGCCG-AAGTATGTATTGTGAGCCTGCTTCTATATCAGTCTCT 1079
Query 945 TGTTCAAGTATGCAG-TGTAGAAACAGCAACCTCATGCTCGGTAACATCACGGT-GCAGC 1002
||||| |||||| || ||||||||||||||| ||||||| |||||||| || | |||||
Sbjct 1080 TGTTCCAGTATG-AGATGTAGAAACAGCAACTTCATGCTTGGTAACATTACT-TCGCAGC 1137
Query 1003 AGAGTAGCGCTGGCTGTAATGTTACAACCTGT-GATTACAATGGTATT-GCCAACGGCAC 1060
|||||||| | || ||||| |||| || ||| | |||||| ||| || || | ||||||
Sbjct 1138 AGAGTAGCTCCGGTTGTAAACTTACTACTTGTAG-TTACAACGGT-TTCGCTAGCGGCAC 1195
Query 1061 TATCTTGACCATGCTGACCAGGTCTCTTCAACCCCGATGTCCC-GGACCTCAACAATTTG 1119
||||||||||| | || ||| |||||||||||| ||||| ||| ||||| |||||||| |
Sbjct 1196 TATCTTGACCACGTTGTCCATGTCTCTTCAACCTCGATG-CCCTGGACCGCAACAATTAG 1254
Query 1120 CGCCGCTTCTAGCTCCACCGGATACTGTTCCTAAGGATGTAATGTATGC-ACCAGCACCT 1178
| |||||| |||| || || |||| |||||| ||||| | |||||| | ||| |||||
Sbjct 1255 CACCGCTTATAGCCCCGCCTGATAATGTTCCAAAGGAACTGATGTAT-CTACCTTCACCT 1313
Query 1179 TCACC 1183
|||||
Sbjct 1314 TCACC 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73744600605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5