BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472427
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21910.1 | Symbols: DREB26 | Integrase-type DNA-binding supe... 1480 0.0
> AT1G21910.1 | Symbols: DREB26 | Integrase-type DNA-binding superfamily
protein | chr1:7696536-7697699 FORWARD LENGTH=1164
Length=1164
Score = 1480 bits (801), Expect = 0.0
Identities = 995/1082 (92%), Gaps = 39/1082 (4%)
Strand=Plus/Plus
Query 29 acaacaacaacaaaaactcaagaacaaTCTCTTCACTTGATCAAC-ACCACATTGTCCTA 87
|||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||| |
Sbjct 23 ACAACAACAACAAAAACTCAAGAACAATATCTCCACTTGATC-ACTACCACATTGTCCAA 81
Query 88 TCATTCTATACAAAGCC--T-C-CATACAACAAGTCATTACCATGGTGAAACAAGAACGC 143
||| || ||||||||| | | | ||||||| |||||||||||||||||||||||||
Sbjct 82 TCA--CTCTACAAAGCCTGTACGTACACAACAA--CATTACCATGGTGAAACAAGAACGC 137
Query 144 AAGATCCAAACCA--A-CACAAAAAAGGAAATGCCTTTGtcatcatcaccatcttcttct 200
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 AAGATCCAAACCAGCAGCACAAAAAAGGAAATGCCTTTGTCATCATCACCATCTTCTTCT 197
Query 201 tcatcttcatcttcttcctcgtcttcgtcttcGTGTAAGAACAAGAACAAGAAGAGTAAG 260
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TCTTCTTCATCTTCTTCCTCGTCTTCGTCTTCGTGTAAGAACAAGAACAAGAAGAGTAAG 257
Query 261 ATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTTTCTGAGATTAGG 320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 258 ATTAAGAAGTACAAAGGAGTGAGGATGAGAAGTTGGGGATCATGGGTCTCTGAGATTAGG 317
Query 321 GCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGCTGCT 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GCACCAAATCAAAAGACAAGGATTTGGTTAGGTTCTTACTCAACAGCTGAAGCAGCTGCT 377
Query 381 AGGGCTTACGATGTTGCACTCTTGTGTCTCAAAGGTCCTCAAGCCAATCTCAACTTCCCT 440
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 378 AGAGCTTACGATGTTGCACTCTTATGTCTCAAAGGCCCTCAAGCCAATCTCAACTTCCCT 437
Query 441 ACTTCTTCTTCT-CATCATCATCTTCTTGATGATCTCTTAGATGAAAAGACCATTTTATC 499
|||||||||||| | |||||||||||||||| |||||||||||||||| ||| |||| ||
Sbjct 438 ACTTCTTCTTCTTC-TCATCATCTTCTTGATAATCTCTTAGATGAAAATACCCTTTTGTC 496
Query 500 CCCCAAATCCATCCAAAGAGTAGCTGCTCAAGCTGCCAATTCACTTGACCTTTTTGCCCC 559
||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||
Sbjct 497 CCCCAAATCCATCCAAAGAGTAGCTGCTCAAGCTGCCAACTCATTTAACCATTTTGCCCC 556
Query 560 TTCTTCATCAGCCGTCTCGTCACCGTCCGATCATGATCAGCATCATGATGATGGGATGCA 619
| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 557 TACTTCATCAGCCGTCTCGTCACCGTCCGATCATGATCATCACCATGATGATGGGATGCA 616
Query 620 ATCTTTGATGGGATCTTTTGTGGACAATCATGTGTCTTTGATGAATCCATCATCATCATG 679
||||||||||||||||||||||||||||||||||||||||||| || || |||| |||||
Sbjct 617 ATCTTTGATGGGATCTTTTGTGGACAATCATGTGTCTTTGATGGATTCAACATCTTCATG 676
Query 680 GTATGATGATCATAATGGAATGTTCTTGTTCGATGATGGAGCTCCGTTTAATTACTCTCC 739
|||||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||
Sbjct 677 GTATGATGATCATAATGGGATGTTCTTGTTTGATAATGGAGCTCCATTCAATTACTCTCC 736
Query 740 TCAATTAAACTCGACGACGATGCTCGATGAGTACTTCTACGAAGATGCTGACATTCCGCT 799
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 737 TCAACTAAACTCGACGACGATGCTCGATGAATACTTCTACGAAGATGCTGACATTCCGCT 796
Query 800 TTGGAGTTTCAATTGATCCGACGGTCCATAATACATGCTCTAATTAGtttt-t----cat 854
|||||||||||||| ||||||||||||||||||||| || ||||||||||| | |||
Sbjct 797 TTGGAGTTTCAATTAATCCGACGGTCCATAATACATACTTTAATTAGTTTTCTAAATCAT 856
Query 855 tttttAA-TTCTTTT--ATATATGTTA-ATTAAATT-ACCCTCGTCGTAATTCTTT-TTT 908
||||||| ||||||| |||||||| | || | ||| ||||||||||||||| || |||
Sbjct 857 TTTTTAAATTCTTTTTTATATATGTAACAT-ATATTTACCCTCGTCGTAATTATTCATTT 915
Query 909 CCCAAGTTGTTTGTTGCTTGGAGAGAATTGACGACGGATACGAAATATATAATATACTAT 968
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 916 CC-AAGTTGTTTGTTGCTTGGAGAGAATTGACGACGGATACGAT-TATATAATATAAT-T 972
Query 969 AATTCAAGGTTTTATATGTAGCAATACTCGATACAATTAATTCGGATTTAATAGGGATCT 1028
| ||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 973 G-T--AAGTTTTTATATGTAGCAA-ACTCGGTACAATT----CGGATTTAATAGGGATCT 1024
Query 1029 AGGAAGTTCACATGAACAAGAGACT-TTTTTATTGTCATTTCTTTGACTTTTTCATGTGA 1087
|||||||||||||||||||| |||| ||||| |||||| |||||||||||||||||||||
Sbjct 1025 AGGAAGTTCACATGAACAAGCGACTCTTTTTTTTGTCACTTCTTTGACTTTTTCATGTGA 1084
Query 1088 GG 1089
||
Sbjct 1085 GG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5