BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472429
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21930.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 603 5e-172
AT3G42150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 512 9e-145
> AT1G21930.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G42150.3);
Has 43 Blast hits to 43 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7712898-7714443
FORWARD LENGTH=532
Length=532
Score = 603 bits (326), Expect = 5e-172
Identities = 371/392 (95%), Gaps = 6/392 (2%)
Strand=Plus/Plus
Query 2 GACTGATCAAAGATGGGAAGTCAGGAGAGTGTGAAACACCTCGAGGAATGCACTGTTTCC 61
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 79 GACTGATCAAAGATGGGAAGTCAGGAGAATGTGAAACACCTCGAGGAATGCACTGTTTCC 138
Query 62 AATGCATTAGGAACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGC 121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AATGCATTAGGGACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGC 198
Query 122 ATCAAACGCAAGTCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGAC 181
||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||
Sbjct 199 ATCAAACGCAAGTCTCTTGGGCCACTCGTGTTCTTTGGCACAACCGGAACAATGCTCGAC 258
Query 182 ATCATCATTGGTGTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTC 241
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 259 ATCATCATTGGTGTAAGTCAATGCGAGAGAGAACACGCAGAACACCAAATGAAGTTACTC 318
Query 242 CAAGACTCTCAAAATGCCACAACAACAACCA--A-CACAGAGACTGAGGATAA-CTCTTC 297
||||||||||||||||||||||||||||||| | |||||||||||| || || ||||||
Sbjct 319 CAAGACTCTCAAAATGCCACAACAACAACCACCAACACAGAGACTGAAGA-AAGCTCTTC 377
Query 298 CATGACCTAATCTTTTT-ACATTTTTCTCAATAAGACTTTGATGTACTTTGTTGCCACTC 356
|||| |||||||||||| |||| ||||||| ||||||||||||||| |||| ||||||||
Sbjct 378 CATGTCCTAATCTTTTTTACATCTTTCTCACTAAGACTTTGATGTAATTTGATGCCACTC 437
Query 357 ACAAGTTAAACTTGTTTCAAGATATTGTGATT 388
||||||||||||||||| ||||||||||||||
Sbjct 438 ACAAGTTAAACTTGTTTTAAGATATTGTGATT 469
> AT3G42150.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte,
pollen tube; EXPRESSED DURING: L mature pollen stage,
M germinated pollen stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G21930.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
| chr3:14310047-14311586 FORWARD LENGTH=470
Length=470
Score = 512 bits (277), Expect = 9e-145
Identities = 358/394 (91%), Gaps = 18/394 (5%)
Strand=Plus/Plus
Query 5 TGATCAAAGATGGGAAGTCAGGAGAGTGTGAAACACCTCGAGGAATGCACTGTTTCCAAT 64
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 38 TGATCAAAGATGGGAAGTCAGAAGAATGTGAAACACCTCGAGGAATGCACTGTTTCCAAT 97
Query 65 GCATTAGGAACATGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATC 124
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 GCATTGGGAACTTGGGTATTCTCAGTCCTAGGCGCATTGGTTGCAATCCCGGTAGGCATC 157
Query 125 AAACGCAAGTCTCTAGGTCCACTAGTGTTCTTTGGCACAACGGGAACAATGCTCGACATC 184
||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 158 AAACGCAAGTCTCTAGGTCCACTTGTGTTCTTCGGCACAACCGGAACAATGCTCGACATT 217
Query 185 ATCATTGGTGTAAGTCAATGTGAGAGAGAACACGCAGAGCACCAAATGAAGTTACTCCAA 244
||||||||||| |||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 218 ATCATTGGTGTGAGTCAATGCGAGAGAGAACACGCAGAACACCAAACGAAGTTACTCCAA 277
Query 245 GACTCTCAAAATGCCACAACAACAAC--CAAC-AC-A-----GAGACTGAGGATAACTCT 295
|||||||||||||||||||||||||| |||| || | ||||||||||||| ||||
Sbjct 278 GACTCTCAAAATGCCACAACAACAACAACAACCACCAACACAGAGACTGAGGATAGCTCT 337
Query 296 TCCATGACCTAATCTTTTT-ACATTTTTCTCAATAAGACTTTGATGTACTTTGTTGCCAC 354
|||||| |||||||||||| |||| ||||||| | | ||||||||||| ||| ||
Sbjct 338 TCCATGTCCTAATCTTTTTTACATCTTTCTCA-T-----T--GATGTACTTTGATGCTAC 389
Query 355 TCACAAGTTAAACTTGTTTCAAGATATTGTGATT 388
||||||||||||||| ||||||||||||||||||
Sbjct 390 TCACAAGTTAAACTTTTTTCAAGATATTGTGATT 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18297460636
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5