BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472431

Length=481
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G21960.1 | Symbols:  | RING/U-box superfamily protein | chr1...   628    1e-179


> AT1G21960.1 | Symbols:  | RING/U-box superfamily protein | chr1:7725972-7726586 
FORWARD LENGTH=615
Length=615

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 438/483 (91%), Gaps = 16/483 (3%)
 Strand=Plus/Plus

Query  1    TACGAAGGCGTCATATCCTCCTACCCTAATGACTTGAAAAAACTGACTGATTGGTTGTAC  60
            |||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct  145  TACGAAGGTGTCATATCCTCCTACCCTAATGACTCGAAAAAACTGAATGATTGGTTGTAC  204

Query  61   TTAGCAGGGCTCTCCGACCAATATGTTGACATTGCTAACTCTCAACTTACTGAACGAATC  120
            | ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  205  TCAGCAGGGCTCTCCGAACAATATGTTGACATTGCTAACTCTCAACTCACTGAACGAATC  264

Query  121  TGTAAGTCGATTAT-TATGGTAGACTCTCCAGTTTGTGCTACGTTAGTGTACATGTACTG  179
            |||||||||||| | ||||||||||||| ||||||||||||| ||||| |||||||||||
Sbjct  265  TGTAAGTCGATT-TCTATGGTAGACTCTTCAGTTTGTGCTACTTTAGTTTACATGTACTG  323

Query  180  TAAAGTCATTGTTCCCTCTCCTCCTTGGATTGACTCGTTCGATGAGACCACCAATAATAT  239
            |||||||||||||  | | ||| |  ||||||||||||| ||||||||||||||||||||
Sbjct  324  TAAAGTCATTGTT--C-CACCT-C--GGATTGACTCGTTTGATGAGACCACCAATAATAT  377

Query  240  CCG-GTTAATTAGACCGGCAAGTAAGCTTGCGGTTGGTCGTTTGGCAAGGAAAATATATA  298
             || ||| ||||||||||||| |||||||| |||||  ||||||||||||||| ||||| 
Sbjct  378  -CGAGTTGATTAGACCGGCAAATAAGCTTGTGGTTGACCGTTTGGCAAGGAAAGTATAT-  435

Query  299  AGAACAATAAGAAGAAGACGTCCAAGTTTGACGCCAGCATGTGCGCAATTTGTTTGGAGG  358
                 |||||||||||||  ||||| | |||||| ||| ||||| |||||||||||||||
Sbjct  436  -----AATAAGAAGAAGAAATCCAACTCTGACGCGAGCGTGTGCACAATTTGTTTGGAGG  490

Query  359  GGTTTGAAAAGGGAGAAATAGTCGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT  418
             ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  491  AGTTTGAAAAGGGAGAAATAGTGGTGACCTTACCATGTGGCCACGAGTTTGACGATGGAT  550

Query  419  GTATTGTGAAGTGGTTTTTGAAAGATCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCGT  478
            |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  551  GTATTGGGAAGTGGTTTTTGAAAGACCATGTTTGTCCATTGTGCCGTTTCGAGTTGCCTT  610

Query  479  GTT  481
            |||
Sbjct  611  GTT  613



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22906771032


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5